Wall clock time and date at job start Tue Mar 31 2020 18:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47423 * 2 1 4 4 C 1.53001 * 109.47423 * 180.02562 * 3 2 1 5 5 N 1.46500 * 110.45658 * 57.39322 * 4 3 2 6 6 C 1.34775 * 119.99710 * 180.02562 * 5 4 3 7 7 O 1.21271 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99472 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.47005 * 180.02562 * 8 6 5 10 10 C 1.38306 * 119.92602 * 269.72735 * 9 8 6 11 11 C 1.38105 * 120.06366 * 179.72230 * 10 9 8 12 12 C 1.38879 * 119.93341 * 0.54989 * 11 10 9 13 13 O 1.35749 * 120.07027 * 179.74789 * 12 11 10 14 14 C 1.34830 * 116.99802 * 174.44231 * 13 12 11 15 15 H 1.07998 * 119.99982 * 5.05769 * 14 13 12 16 16 C 1.38651 * 119.99572 * 185.05392 * 14 13 12 17 17 N 1.31566 * 119.99675 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00520 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47182 * 89.99422 * 18 16 14 20 20 H 1.48495 * 109.47224 * 209.99998 * 18 16 14 21 21 H 1.48503 * 109.46684 * 329.99957 * 18 16 14 22 22 C 1.38880 * 119.85806 * 359.72372 * 12 11 10 23 23 C 1.38100 * 119.93576 * 0.02562 * 22 12 11 24 24 C 1.54503 * 110.51231 * 180.02562 * 4 3 2 25 25 C 1.54478 * 104.06442 * 118.64379 * 24 4 3 26 26 O 1.44425 * 104.80289 * 23.97667 * 25 24 4 27 27 C 1.44423 * 105.27636 * 319.48801 * 26 25 24 28 28 H 1.08998 * 109.46792 * 59.99823 * 1 2 3 29 29 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46836 * 300.00046 * 1 2 3 31 31 H 1.09002 * 109.47105 * 239.99475 * 2 1 3 32 32 H 1.09007 * 109.46887 * 120.00337 * 2 1 3 33 33 H 1.09002 * 109.47152 * 60.00147 * 3 2 1 34 34 H 1.08998 * 109.47281 * 299.99878 * 3 2 1 35 35 H 0.97001 * 119.99829 * 0.02562 * 5 4 3 36 36 H 1.09003 * 109.47350 * 299.99941 * 8 6 5 37 37 H 1.09000 * 109.47352 * 59.99817 * 8 6 5 38 38 H 1.07994 * 119.96958 * 0.02562 * 10 9 8 39 39 H 1.08003 * 120.03050 * 180.26884 * 11 10 9 40 40 H 0.96995 * 119.99824 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.03298 * 180.02562 * 22 12 11 42 42 H 1.07997 * 119.97087 * 179.97438 * 23 22 12 43 43 H 1.09004 * 110.50878 * 237.28781 * 24 4 3 44 44 H 1.09003 * 110.51213 * 359.85795 * 24 4 3 45 45 H 1.09008 * 110.37458 * 142.80651 * 25 24 4 46 46 H 1.09003 * 110.37354 * 265.03260 * 25 24 4 47 47 H 1.08997 * 110.37154 * 281.68356 * 27 26 25 48 48 H 1.08998 * 110.37218 * 159.34107 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0816 0.7029 -1.1572 6 6 5.4106 0.5822 -1.3457 7 8 6.1831 1.0852 -0.5577 8 6 5.9368 -0.1781 -2.5358 9 6 7.4436 -0.1653 -2.5139 10 6 8.1344 0.8478 -3.1537 11 6 9.5151 0.8654 -3.1305 12 6 10.2101 -0.1417 -2.4737 13 8 11.5674 -0.1299 -2.4536 14 6 12.1766 -1.0699 -1.7032 15 1 11.5911 -1.8374 -1.2189 16 6 13.5549 -1.0514 -1.5534 17 7 14.1494 -1.9684 -0.8208 18 14 14.5677 0.2763 -2.3906 19 1 14.7022 1.4431 -1.4819 20 1 15.9152 -0.2582 -2.7127 21 1 13.8907 0.6996 -3.6427 22 6 9.5136 -1.1606 -1.8371 23 6 8.1328 -1.1699 -1.8593 24 6 4.1115 2.8895 0.0000 25 6 4.9163 2.9886 1.3148 26 8 5.2805 1.6266 1.6281 27 6 4.1119 0.8384 1.3140 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.4638 0.3003 -1.7873 36 1 5.5819 -1.2079 -2.4950 37 1 5.5824 0.2922 -3.4531 38 1 7.5935 1.6285 -3.6677 39 1 10.0539 1.6592 -3.6266 40 1 15.1135 -1.9552 -0.7158 41 1 10.0512 -1.9451 -1.3251 42 1 7.5905 -1.9622 -1.3648 43 1 4.7617 3.0544 -0.8592 44 1 3.2891 3.6050 -0.0018 45 1 5.8095 3.5961 1.1681 46 1 4.2979 3.4097 2.1075 47 1 3.3694 0.9279 2.1070 48 1 4.3869 -0.2060 1.1666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287966145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:29 Heat of formation + Delta-G solvation = -86.643280 kcal Electronic energy + Delta-G solvation = -28893.551826 eV Core-core repulsion = 24914.192779 eV Total energy + Delta-G solvation = -3979.359047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81392 -39.19621 -38.20902 -36.55375 -36.05768 -33.52873 -32.45062 -31.77914 -30.81276 -30.15342 -29.23728 -26.77375 -26.28147 -24.85766 -23.33915 -22.03806 -21.76006 -21.56454 -20.13849 -19.64329 -17.81571 -17.32803 -17.05224 -16.70400 -15.86988 -15.64016 -15.28653 -15.12031 -14.81780 -14.49893 -14.36386 -13.90131 -13.82176 -13.70491 -13.52732 -13.39958 -13.08156 -12.84441 -12.72100 -12.59352 -12.33960 -12.13976 -11.98796 -11.71696 -11.59463 -11.45234 -11.35099 -11.21974 -10.94205 -10.88834 -10.82438 -10.68827 -10.60572 -10.09614 -9.83369 -9.43749 -9.30945 -8.93521 -8.79012 -8.14991 -7.22142 -6.34885 -4.00999 2.23824 2.24479 2.88321 3.15929 3.26925 3.31249 3.45271 3.88884 4.25455 4.29738 4.34468 4.50533 4.54837 4.73317 4.74189 4.93144 4.94441 5.01843 5.04744 5.10668 5.18083 5.19378 5.29805 5.31195 5.34948 5.35776 5.43369 5.54564 5.63864 5.65516 5.69137 5.73167 5.74325 5.80173 5.83374 5.84506 5.94245 6.21116 6.41232 6.48671 6.64841 6.87757 6.89744 7.10505 7.30551 7.39317 7.53212 7.70251 7.88182 8.11458 8.47458 9.00687 9.63945 10.72992 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002442 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.548299 B =11462.391532 C =11747.733742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.146 3.854 5 N -0.733 5.733 6 C 0.498 3.502 7 O -0.483 6.483 8 C -0.082 4.082 9 C -0.158 4.158 10 C -0.062 4.062 11 C -0.191 4.191 12 C 0.162 3.838 13 O -0.219 6.219 14 C -0.387 4.387 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.881 5.881 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.218 4.218 23 C -0.057 4.057 24 C -0.155 4.155 25 C 0.055 3.945 26 O -0.342 6.342 27 C 0.046 3.954 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.988 6.400 -0.672 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C 0.059 3.941 5 N -0.388 5.388 6 C 0.283 3.717 7 O -0.354 6.354 8 C -0.122 4.122 9 C -0.159 4.159 10 C -0.080 4.080 11 C -0.210 4.210 12 C 0.110 3.890 13 O -0.124 6.124 14 C -0.463 4.463 15 H 0.124 0.876 16 C -0.141 4.141 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.237 4.237 23 C -0.075 4.075 24 C -0.193 4.193 25 C -0.023 4.023 26 O -0.259 6.259 27 C -0.033 4.033 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.230 0.770 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.774 6.751 -0.022 28.583 hybrid contribution -0.042 0.241 -0.566 0.616 sum -27.816 6.992 -0.588 28.687 Atomic orbital electron populations 1.21773 0.95510 1.01866 1.01847 1.21568 0.96039 0.96272 1.02638 1.21855 0.92071 0.97921 1.03379 1.21643 0.93415 0.91678 0.87353 1.46215 1.07350 1.57654 1.27621 1.21015 0.81675 0.81249 0.87729 1.90875 1.55742 1.44724 1.44061 1.20433 0.94591 1.00762 0.96370 1.18685 0.92137 0.98876 1.06196 1.20372 0.92977 0.96552 0.98145 1.20136 0.93477 1.00087 1.07344 1.19109 0.83591 0.93061 0.93258 1.83567 1.14627 1.52187 1.62051 1.20772 0.91525 1.06642 1.27344 0.87649 1.24466 0.95812 0.97642 0.96165 1.69654 1.10979 1.33665 1.37662 0.86178 0.78693 0.81167 0.80841 1.19905 1.20850 1.18398 1.21217 0.94125 1.01757 1.06630 1.20545 0.93603 0.96976 0.96388 1.23266 1.00132 0.95455 1.00480 1.23191 0.99159 0.85861 0.94061 1.89322 1.33683 1.16770 1.86120 1.23683 0.88594 0.97076 0.93909 0.92689 0.92567 0.92692 0.91728 0.91528 0.90230 0.90905 0.76999 0.89229 0.89271 0.87372 0.86665 0.91140 0.85042 0.87649 0.89958 0.90692 0.89317 0.93222 0.92318 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.13 -0.64 5.58 -26.73 -0.15 -0.79 16 3 C -0.11 -0.63 4.07 -26.73 -0.11 -0.74 16 4 C 0.15 1.29 0.86 -130.25 -0.11 1.17 16 5 N -0.73 -6.63 4.85 -46.16 -0.22 -6.85 16 6 C 0.50 6.52 6.92 -10.98 -0.08 6.45 16 7 O -0.48 -8.66 12.07 -17.34 -0.21 -8.87 16 8 C -0.08 -0.99 5.83 -29.03 -0.17 -1.15 16 9 C -0.16 -2.70 4.38 -104.57 -0.46 -3.16 16 10 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 11 C -0.19 -4.01 9.99 -39.39 -0.39 -4.41 16 12 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 13 O -0.22 -6.03 8.59 0.05 0.00 -6.03 16 14 C -0.39 -11.32 9.95 30.88 0.31 -11.01 16 15 H 0.11 3.15 5.44 -52.49 -0.29 2.87 16 16 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 17 N -0.88 -26.19 13.96 55.48 0.77 -25.41 16 18 Si 0.91 22.39 28.62 -169.99 -4.86 17.52 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.22 -4.99 9.17 -39.39 -0.36 -5.35 16 23 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 24 C -0.15 -1.52 5.76 -25.17 -0.15 -1.67 16 25 C 0.05 0.64 7.34 37.93 0.28 0.92 16 26 O -0.34 -5.22 9.60 -58.14 -0.56 -5.77 16 27 C 0.05 0.51 5.27 37.94 0.20 0.71 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 6.78 -51.93 -0.35 -0.05 16 32 H 0.07 0.38 7.45 -51.93 -0.39 0.00 16 33 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.40 2.41 7.25 -40.82 -0.30 2.12 16 36 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 40 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.13 3.15 5.64 -52.48 -0.30 2.85 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.08 0.99 7.06 -51.93 -0.37 0.62 16 44 H 0.07 0.55 7.73 -51.93 -0.40 0.15 16 45 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 48 H 0.09 1.06 8.02 -51.93 -0.42 0.64 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -34.53 384.35 -8.64 -43.17 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.41 Total: 3.38 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.94 Total: -16.92 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.55 Total: -32.26 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.77 Total: -20.67 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.86 Total: 17.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.53 -8.64 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287966145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.475 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds