Wall clock time and date at job start Tue Mar 31 2020 18:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47423 * 2 1 4 4 C 1.53001 * 109.47423 * 180.02562 * 3 2 1 5 5 N 1.46500 * 110.45658 * 57.39322 * 4 3 2 6 6 C 1.34775 * 119.99710 * 180.02562 * 5 4 3 7 7 O 1.21271 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99472 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.47005 * 180.02562 * 8 6 5 10 10 C 1.38306 * 119.92602 * 269.72735 * 9 8 6 11 11 C 1.38105 * 120.06366 * 179.72230 * 10 9 8 12 12 C 1.38879 * 119.93341 * 0.54989 * 11 10 9 13 13 O 1.35749 * 120.07027 * 179.74789 * 12 11 10 14 14 C 1.34830 * 116.99802 * 174.44231 * 13 12 11 15 15 H 1.07998 * 119.99982 * 5.05769 * 14 13 12 16 16 C 1.38651 * 119.99572 * 185.05392 * 14 13 12 17 17 N 1.31566 * 119.99675 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00520 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47182 * 89.99422 * 18 16 14 20 20 H 1.48495 * 109.47224 * 209.99998 * 18 16 14 21 21 H 1.48503 * 109.46684 * 329.99957 * 18 16 14 22 22 C 1.38880 * 119.85806 * 359.72372 * 12 11 10 23 23 C 1.38100 * 119.93576 * 0.02562 * 22 12 11 24 24 C 1.54503 * 110.51231 * 180.02562 * 4 3 2 25 25 C 1.54478 * 104.06442 * 118.64379 * 24 4 3 26 26 O 1.44425 * 104.80289 * 23.97667 * 25 24 4 27 27 C 1.44423 * 105.27636 * 319.48801 * 26 25 24 28 28 H 1.08998 * 109.46792 * 59.99823 * 1 2 3 29 29 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46836 * 300.00046 * 1 2 3 31 31 H 1.09002 * 109.47105 * 239.99475 * 2 1 3 32 32 H 1.09007 * 109.46887 * 120.00337 * 2 1 3 33 33 H 1.09002 * 109.47152 * 60.00147 * 3 2 1 34 34 H 1.08998 * 109.47281 * 299.99878 * 3 2 1 35 35 H 0.97001 * 119.99829 * 0.02562 * 5 4 3 36 36 H 1.09003 * 109.47350 * 299.99941 * 8 6 5 37 37 H 1.09000 * 109.47352 * 59.99817 * 8 6 5 38 38 H 1.07994 * 119.96958 * 0.02562 * 10 9 8 39 39 H 1.08003 * 120.03050 * 180.26884 * 11 10 9 40 40 H 0.96995 * 119.99824 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.03298 * 180.02562 * 22 12 11 42 42 H 1.07997 * 119.97087 * 179.97438 * 23 22 12 43 43 H 1.09004 * 110.50878 * 237.28781 * 24 4 3 44 44 H 1.09003 * 110.51213 * 359.85795 * 24 4 3 45 45 H 1.09008 * 110.37458 * 142.80651 * 25 24 4 46 46 H 1.09003 * 110.37354 * 265.03260 * 25 24 4 47 47 H 1.08997 * 110.37154 * 281.68356 * 27 26 25 48 48 H 1.08998 * 110.37218 * 159.34107 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0816 0.7029 -1.1572 6 6 5.4106 0.5822 -1.3457 7 8 6.1831 1.0852 -0.5577 8 6 5.9368 -0.1781 -2.5358 9 6 7.4436 -0.1653 -2.5139 10 6 8.1344 0.8478 -3.1537 11 6 9.5151 0.8654 -3.1305 12 6 10.2101 -0.1417 -2.4737 13 8 11.5674 -0.1299 -2.4536 14 6 12.1766 -1.0699 -1.7032 15 1 11.5911 -1.8374 -1.2189 16 6 13.5549 -1.0514 -1.5534 17 7 14.1494 -1.9684 -0.8208 18 14 14.5677 0.2763 -2.3906 19 1 14.7022 1.4431 -1.4819 20 1 15.9152 -0.2582 -2.7127 21 1 13.8907 0.6996 -3.6427 22 6 9.5136 -1.1606 -1.8371 23 6 8.1328 -1.1699 -1.8593 24 6 4.1115 2.8895 0.0000 25 6 4.9163 2.9886 1.3148 26 8 5.2805 1.6266 1.6281 27 6 4.1119 0.8384 1.3140 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.4638 0.3003 -1.7873 36 1 5.5819 -1.2079 -2.4950 37 1 5.5824 0.2922 -3.4531 38 1 7.5935 1.6285 -3.6677 39 1 10.0539 1.6592 -3.6266 40 1 15.1135 -1.9552 -0.7158 41 1 10.0512 -1.9451 -1.3251 42 1 7.5905 -1.9622 -1.3648 43 1 4.7617 3.0544 -0.8592 44 1 3.2891 3.6050 -0.0018 45 1 5.8095 3.5961 1.1681 46 1 4.2979 3.4097 2.1075 47 1 3.3694 0.9279 2.1070 48 1 4.3869 -0.2060 1.1666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287966145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:28 Heat of formation + Delta-G solvation = -108.931157 kcal Electronic energy + Delta-G solvation = -28894.518301 eV Core-core repulsion = 24914.192779 eV Total energy + Delta-G solvation = -3980.325522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.70629 -40.86299 -39.42530 -38.15009 -36.79882 -34.52109 -34.24048 -33.04139 -31.86867 -31.76657 -30.01694 -28.29487 -26.90266 -26.72471 -24.10606 -23.70579 -22.89299 -22.20545 -21.42374 -20.48079 -19.81877 -19.11689 -18.06343 -17.60071 -16.76118 -16.72343 -16.50663 -16.30316 -15.96163 -15.73162 -15.65184 -15.50201 -15.31276 -15.03293 -14.62602 -14.36956 -14.26725 -14.09867 -14.00860 -13.77227 -13.49625 -13.19925 -13.03391 -12.73289 -12.55490 -12.51463 -12.46076 -12.37892 -12.29064 -12.14327 -11.93491 -11.87423 -11.48253 -11.37831 -11.28476 -10.92775 -10.77075 -10.50247 -9.81232 -9.77747 -8.96565 -8.51189 -6.23696 0.59090 0.63524 1.28650 1.34049 1.50228 1.89446 2.27070 2.29087 2.78831 3.05711 3.11946 3.19264 3.58129 3.75728 3.87147 3.92550 4.04246 4.12131 4.16499 4.20514 4.20888 4.30969 4.43023 4.49147 4.51729 4.58847 4.69870 4.71903 4.76641 4.82608 4.83290 4.84321 4.92687 4.96432 4.99223 5.04129 5.15790 5.25927 5.32516 5.36709 5.38570 5.51539 5.57084 5.70473 5.74933 5.80083 5.91354 6.04487 6.25725 6.75991 6.82952 7.56091 7.57992 8.60834 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002442 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.548299 B =11462.391532 C =11747.733742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.105 4.105 4 C 0.151 3.849 5 N -0.712 5.712 6 C 0.498 3.502 7 O -0.540 6.540 8 C -0.081 4.081 9 C -0.132 4.132 10 C -0.059 4.059 11 C -0.193 4.193 12 C 0.117 3.883 13 O -0.247 6.247 14 C -0.400 4.400 15 H 0.077 0.923 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.263 1.263 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.065 4.065 24 C -0.149 4.149 25 C 0.047 3.953 26 O -0.388 6.388 27 C 0.040 3.960 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.127 0.873 40 H 0.285 0.715 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.388 8.144 -2.518 34.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.142 4.142 4 C 0.064 3.936 5 N -0.368 5.368 6 C 0.285 3.715 7 O -0.415 6.415 8 C -0.120 4.120 9 C -0.133 4.133 10 C -0.076 4.076 11 C -0.213 4.213 12 C 0.068 3.932 13 O -0.155 6.155 14 C -0.476 4.476 15 H 0.095 0.905 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.795 3.205 19 H -0.193 1.193 20 H -0.188 1.188 21 H -0.186 1.186 22 C -0.258 4.258 23 C -0.083 4.083 24 C -0.187 4.187 25 C -0.030 4.030 26 O -0.307 6.307 27 C -0.038 4.038 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -32.276 8.480 -1.898 33.426 hybrid contribution 0.922 -0.303 0.039 0.971 sum -31.354 8.177 -1.859 32.456 Atomic orbital electron populations 1.21751 0.94825 1.01966 1.02288 1.21564 0.96575 0.95885 1.02471 1.21837 0.89005 0.98570 1.04810 1.21701 0.95429 0.90604 0.85886 1.45990 1.06358 1.56649 1.27812 1.21104 0.82596 0.80588 0.87219 1.90897 1.57327 1.47255 1.45984 1.20555 0.90433 1.03165 0.97854 1.19294 0.95382 0.96414 1.02161 1.20915 0.91787 0.97456 0.97480 1.20503 0.95029 0.99267 1.06453 1.19668 0.82887 0.95072 0.95580 1.83503 1.16312 1.52298 1.63337 1.20701 0.92028 1.06890 1.27972 0.90511 1.25324 0.96741 1.00042 0.96973 1.69739 1.11632 1.35613 1.39578 0.85183 0.77541 0.78266 0.79479 1.19313 1.18792 1.18617 1.21232 0.95971 1.01282 1.07273 1.20871 0.92119 0.98616 0.96694 1.23236 1.00358 0.96860 0.98257 1.23329 0.99019 0.84501 0.96148 1.89266 1.36144 1.18598 1.86705 1.23854 0.87999 0.95907 0.96026 0.91928 0.92713 0.92590 0.91179 0.92534 0.89168 0.89116 0.74750 0.86200 0.85141 0.82995 0.85493 0.90560 0.87862 0.85351 0.92149 0.87529 0.91530 0.90831 0.90276 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 71.98 0.71 -0.06 16 2 C -0.13 -0.81 5.58 30.59 0.17 -0.64 16 3 C -0.10 -0.70 4.07 30.59 0.12 -0.57 16 4 C 0.15 2.18 0.86 4.62 0.00 2.18 16 5 N -0.71 -10.12 4.85 -418.34 -2.03 -12.15 16 6 C 0.50 11.47 6.92 87.66 0.61 12.07 16 7 O -0.54 -18.70 12.07 18.90 0.23 -18.47 16 8 C -0.08 -1.56 5.83 29.10 0.17 -1.39 16 9 C -0.13 -4.14 4.38 -19.83 -0.09 -4.22 16 10 C -0.06 -1.93 9.69 22.25 0.22 -1.71 16 11 C -0.19 -8.04 9.99 22.39 0.22 -7.81 16 12 C 0.12 5.93 6.65 22.58 0.15 6.08 16 13 O -0.25 -14.34 8.59 -22.73 -0.20 -14.54 16 14 C -0.40 -25.04 9.95 67.92 0.68 -24.36 16 15 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 16 C 0.01 0.43 5.49 84.83 0.47 0.90 16 17 N -0.92 -57.69 13.96 21.61 0.30 -57.39 16 18 Si 0.97 47.73 28.62 68.60 1.96 49.70 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.24 -11.51 9.17 22.39 0.21 -11.31 16 23 C -0.06 -2.47 9.69 22.25 0.22 -2.26 16 24 C -0.15 -2.54 5.76 31.61 0.18 -2.36 16 25 C 0.05 1.07 7.34 72.48 0.53 1.60 16 26 O -0.39 -11.91 9.60 -127.08 -1.22 -13.13 16 27 C 0.04 0.83 5.27 72.49 0.38 1.22 16 28 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.36 6.78 -2.39 -0.02 0.35 16 32 H 0.06 0.49 7.45 -2.38 -0.02 0.47 16 33 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.41 2.90 7.25 -92.71 -0.67 2.23 16 36 H 0.12 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 38 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.28 16.23 8.31 -92.71 -0.77 15.46 16 41 H 0.10 5.48 5.64 -2.91 -0.02 5.46 16 42 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.06 1.32 7.06 -2.38 -0.02 1.30 16 44 H 0.11 1.12 7.73 -2.39 -0.02 1.10 16 45 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.08 1.27 7.83 -2.39 -0.02 1.25 16 48 H 0.07 1.66 8.02 -2.39 -0.02 1.64 16 Total: -1.00 -83.36 384.35 4.29 -79.06 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.29 Total: 19.56 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 4.95 Total: -32.65 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.73 Total: -69.54 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.19 Total: -46.14 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.96 Total: 49.70 kcal Total: -83.36 4.29 -79.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287966145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.867 kcal (2) G-P(sol) polarization free energy of solvation -83.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds