Wall clock time and date at job start Tue Mar 31 2020 18:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47644 * 2 1 4 4 C 1.52998 * 109.47527 * 185.03703 * 3 2 1 5 5 C 1.52993 * 110.30585 * 66.88768 * 4 3 2 6 6 O 1.42893 * 109.47512 * 62.72706 * 5 4 3 7 7 C 1.54286 * 110.34139 * 304.71010 * 4 3 2 8 8 C 1.54385 * 104.96218 * 241.13005 * 7 4 3 9 9 N 1.48143 * 104.61882 * 336.13348 * 8 7 4 10 10 C 1.34773 * 127.84199 * 219.58764 * 9 8 7 11 11 O 1.21586 * 120.00323 * 174.44169 * 10 9 8 12 12 C 1.47541 * 119.99799 * 354.43842 * 10 9 8 13 13 C 1.39665 * 120.19325 * 324.99057 * 12 10 9 14 14 C 1.37833 * 119.91689 * 180.23311 * 13 12 10 15 15 C 1.38579 * 120.32132 * 359.46763 * 14 13 12 16 16 C 1.38030 * 120.40026 * 0.55398 * 15 14 13 17 17 C 1.38832 * 120.07020 * 359.70502 * 16 15 14 18 18 O 1.35519 * 120.15837 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00425 * 5.57297 * 18 17 16 20 20 H 1.08003 * 119.99472 * 5.33519 * 19 18 17 21 21 C 1.38691 * 120.00431 * 185.34118 * 19 18 17 22 22 N 1.31516 * 120.00401 * 179.97438 * 21 19 18 23 23 Si 1.86809 * 119.99913 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 90.00147 * 23 21 19 25 25 H 1.48500 * 109.46864 * 210.00267 * 23 21 19 26 26 H 1.48501 * 109.47068 * 330.00156 * 23 21 19 27 27 C 1.48147 * 104.32150 * 39.84676 * 9 8 7 28 28 H 1.09000 * 109.46791 * 59.99549 * 1 2 3 29 29 H 1.08990 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46656 * 299.99702 * 1 2 3 31 31 H 1.09003 * 109.47387 * 240.00236 * 2 1 3 32 32 H 1.08997 * 109.47289 * 120.00367 * 2 1 3 33 33 H 1.09005 * 109.46825 * 65.03500 * 3 2 1 34 34 H 1.09002 * 109.47132 * 305.03659 * 3 2 1 35 35 H 1.09006 * 109.47107 * 182.72787 * 5 4 3 36 36 H 1.09008 * 109.46968 * 302.72215 * 5 4 3 37 37 H 0.96700 * 114.00552 * 180.02562 * 6 5 4 38 38 H 1.08996 * 110.34677 * 122.25652 * 7 4 3 39 39 H 1.09009 * 110.34276 * 0.02562 * 7 4 3 40 40 H 1.09001 * 110.40948 * 217.34966 * 8 7 4 41 41 H 1.09008 * 110.40725 * 94.91818 * 8 7 4 42 42 H 1.07995 * 120.04767 * 359.95470 * 13 12 10 43 43 H 1.07989 * 119.84063 * 179.74502 * 14 13 12 44 44 H 1.07996 * 119.80230 * 180.30754 * 15 14 13 45 45 H 1.07998 * 119.96401 * 179.72571 * 16 15 14 46 46 H 0.96996 * 120.00760 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.40767 * 78.93789 * 27 9 8 48 48 H 1.09002 * 110.40957 * 201.37058 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4443 -0.1266 5 6 3.9840 0.9205 -1.5017 6 8 3.4836 1.7931 -2.5166 7 6 4.1967 0.5867 0.9895 8 6 5.0789 1.5659 1.7934 9 7 5.3863 2.6594 0.8423 10 6 6.5526 3.3165 0.6869 11 8 6.6790 4.1269 -0.2108 12 6 7.6762 3.0527 1.6060 13 6 7.4313 2.7697 2.9516 14 6 8.4855 2.5288 3.8063 15 6 9.7884 2.5550 3.3349 16 6 10.0456 2.8337 2.0078 17 6 8.9965 3.0840 1.1336 18 8 9.2470 3.3583 -0.1697 19 6 10.5271 3.2597 -0.5810 20 1 11.2844 2.8903 0.0947 21 6 10.8717 3.6328 -1.8716 22 7 12.1205 3.5371 -2.2726 23 14 9.5617 4.2712 -3.0405 24 1 9.4568 5.7466 -2.9080 25 1 9.9323 3.9245 -4.4361 26 1 8.2549 3.6499 -2.7064 27 6 4.1187 2.8710 0.1052 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7523 1.9296 0.9317 34 1 1.6050 1.9817 -0.8414 35 1 5.0719 0.8820 -1.5596 36 1 3.5767 -0.0797 -1.6491 37 1 3.7116 1.5216 -3.4163 38 1 4.8072 -0.2066 0.5582 39 1 3.4208 0.1638 1.6277 40 1 5.9965 1.0738 2.1160 41 1 4.5315 1.9526 2.6531 42 1 6.4176 2.7440 3.3230 43 1 8.2949 2.3142 4.8473 44 1 10.6077 2.3601 4.0109 45 1 11.0639 2.8566 1.6489 46 1 12.3615 3.7976 -3.1753 47 1 3.4236 3.4583 0.7053 48 1 4.3108 3.3646 -0.8474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290749902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:02 Heat of formation + Delta-G solvation = -86.335995 kcal Electronic energy + Delta-G solvation = -29775.987468 eV Core-core repulsion = 25796.641746 eV Total energy + Delta-G solvation = -3979.345722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.34088 -39.28318 -37.75063 -36.52782 -36.08774 -34.83060 -32.46662 -31.83151 -30.40494 -29.40866 -29.20441 -26.39628 -26.22404 -25.23820 -23.55704 -22.56106 -21.77028 -21.24777 -19.37774 -18.90898 -17.96813 -17.51077 -17.01280 -16.48466 -16.20294 -15.67351 -15.40441 -14.86652 -14.57949 -14.41184 -14.15042 -13.89382 -13.75064 -13.69806 -13.48387 -13.24410 -13.00171 -12.79560 -12.51914 -12.32753 -12.25713 -12.05241 -12.03178 -11.73305 -11.43774 -11.40050 -11.23071 -11.14858 -10.84022 -10.78351 -10.70284 -10.59709 -10.39383 -10.12233 -9.91100 -9.63259 -9.13514 -8.90680 -8.41890 -8.34652 -7.49147 -6.48229 -4.14056 1.63656 2.17332 3.25835 3.29340 3.36479 3.47277 3.59875 4.04088 4.31185 4.39840 4.42538 4.53209 4.65968 4.72549 4.85271 4.96823 5.02268 5.05457 5.16254 5.18540 5.27099 5.34277 5.41118 5.42404 5.53955 5.56221 5.63481 5.64547 5.69454 5.74591 5.80326 5.82698 5.87015 5.95084 6.03705 6.05509 6.07261 6.16364 6.28089 6.37132 6.48876 6.63733 6.86676 7.02045 7.15103 7.47378 7.57661 7.66951 7.93744 7.96270 8.79559 8.87448 9.49405 10.57366 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.004056 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.806640 B = 6901.002274 C = 8669.904528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.069 4.069 5 C 0.089 3.911 6 O -0.569 6.569 7 C -0.129 4.129 8 C 0.100 3.900 9 N -0.629 5.629 10 C 0.590 3.410 11 O -0.520 6.520 12 C -0.218 4.218 13 C -0.044 4.044 14 C -0.219 4.219 15 C -0.053 4.053 16 C -0.225 4.225 17 C 0.200 3.800 18 O -0.180 6.180 19 C -0.395 4.395 20 H 0.109 0.891 21 C 0.071 3.929 22 N -0.871 5.871 23 Si 0.902 3.098 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.248 1.248 27 C 0.118 3.882 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.379 0.621 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.282 0.718 47 H 0.066 0.934 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.103 -8.968 7.653 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.140 4.140 4 C -0.070 4.070 5 C 0.011 3.989 6 O -0.374 6.374 7 C -0.167 4.167 8 C -0.024 4.024 9 N -0.365 5.365 10 C 0.381 3.619 11 O -0.396 6.396 12 C -0.222 4.222 13 C -0.063 4.063 14 C -0.238 4.238 15 C -0.072 4.072 16 C -0.245 4.245 17 C 0.143 3.857 18 O -0.081 6.081 19 C -0.470 4.470 20 H 0.126 0.874 21 C -0.134 4.134 22 N -0.507 5.507 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.171 1.171 27 C -0.004 4.004 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.226 0.774 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.156 0.844 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.101 -8.019 7.246 21.947 hybrid contribution 0.062 -0.128 -0.888 0.899 sum -19.040 -8.147 6.358 21.664 Atomic orbital electron populations 1.21763 0.95995 1.01350 1.01790 1.21634 0.95668 0.97033 1.02035 1.21582 0.92974 0.96981 1.02437 1.21571 0.95825 0.95958 0.93645 1.22205 0.97528 0.91861 0.87275 1.86425 1.79405 1.53563 1.18029 1.22714 0.99186 0.97913 0.96860 1.22469 0.99628 0.88019 0.92253 1.48861 1.10724 1.37720 1.39200 1.17850 0.80261 0.79987 0.83757 1.90809 1.80996 1.34690 1.33063 1.18747 0.90514 1.18454 0.94502 1.20886 0.98559 0.95377 0.91437 1.20554 0.92676 1.11461 0.99109 1.20965 0.96339 0.95150 0.94705 1.21269 0.99918 1.09521 0.93744 1.18977 0.91557 0.90793 0.84338 1.83711 1.30416 1.73893 1.20087 1.20871 0.81927 1.44728 0.99457 0.87414 1.24472 0.96681 0.95352 0.96872 1.69630 1.16443 1.44969 1.19630 0.86190 0.82587 0.80296 0.78252 1.19671 1.21056 1.17149 1.22332 0.84642 0.95281 0.98175 0.92778 0.92995 0.92833 0.91996 0.91795 0.91793 0.90800 0.93342 0.93487 0.77446 0.90766 0.89665 0.89498 0.91415 0.86386 0.86972 0.86827 0.84402 0.90835 0.91617 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.95 5.41 -26.73 -0.14 -1.10 16 3 C -0.10 -0.92 4.12 -26.73 -0.11 -1.03 16 4 C -0.07 -0.76 0.57 -152.89 -0.09 -0.85 16 5 C 0.09 1.04 5.59 37.15 0.21 1.25 16 6 O -0.57 -6.97 12.23 -35.23 -0.43 -7.40 16 7 C -0.13 -1.24 5.80 -25.33 -0.15 -1.39 16 8 C 0.10 1.17 5.21 -2.41 -0.01 1.16 16 9 N -0.63 -10.29 3.31 -170.27 -0.56 -10.85 16 10 C 0.59 12.67 7.44 -12.47 -0.09 12.58 16 11 O -0.52 -13.58 16.19 -12.46 -0.20 -13.79 16 12 C -0.22 -4.54 5.50 -104.81 -0.58 -5.12 16 13 C -0.04 -0.72 7.91 -39.20 -0.31 -1.03 16 14 C -0.22 -3.41 10.03 -39.60 -0.40 -3.81 16 15 C -0.05 -0.91 10.03 -39.53 -0.40 -1.31 16 16 C -0.23 -4.79 9.13 -39.44 -0.36 -5.15 16 17 C 0.20 4.78 6.63 -38.60 -0.26 4.53 16 18 O -0.18 -5.01 7.22 -16.97 -0.12 -5.13 16 19 C -0.39 -11.35 9.90 30.90 0.31 -11.04 16 20 H 0.11 3.08 5.52 -52.48 -0.29 2.79 16 21 C 0.07 2.06 5.49 -17.52 -0.10 1.97 16 22 N -0.87 -25.37 13.96 55.48 0.77 -24.59 16 23 Si 0.90 23.47 28.62 -169.99 -4.86 18.60 16 24 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.25 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.12 1.71 6.09 -2.19 -0.01 1.70 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.49 6.44 -51.93 -0.33 0.16 16 32 H 0.06 0.44 6.41 -51.93 -0.33 0.10 16 33 H 0.06 0.54 7.98 -51.93 -0.41 0.12 16 34 H 0.07 0.76 7.63 -51.93 -0.40 0.36 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.45 6.50 -51.92 -0.34 0.11 16 37 H 0.38 3.23 9.12 45.56 0.42 3.65 16 38 H 0.07 0.73 7.71 -51.93 -0.40 0.33 16 39 H 0.08 0.62 6.09 -51.92 -0.32 0.31 16 40 H 0.09 1.06 6.42 -51.93 -0.33 0.72 16 41 H 0.07 0.65 7.89 -51.92 -0.41 0.24 16 42 H 0.12 1.58 6.21 -52.49 -0.33 1.25 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.14 3.04 5.71 -52.49 -0.30 2.74 16 46 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 48 H 0.09 1.60 6.98 -51.93 -0.36 1.23 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -34.42 378.96 -8.03 -42.44 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.21 Total: 4.33 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.12 Total: -9.32 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.21 Total: -35.45 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.76 Total: -26.32 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.86 Total: 18.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.42 -8.03 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290749902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.891 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds