Wall clock time and date at job start Tue Mar 31 2020 18:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47644 * 2 1 4 4 C 1.52998 * 109.47527 * 185.03703 * 3 2 1 5 5 C 1.52993 * 110.30585 * 66.88768 * 4 3 2 6 6 O 1.42893 * 109.47512 * 62.72706 * 5 4 3 7 7 C 1.54286 * 110.34139 * 304.71010 * 4 3 2 8 8 C 1.54385 * 104.96218 * 241.13005 * 7 4 3 9 9 N 1.48143 * 104.61882 * 336.13348 * 8 7 4 10 10 C 1.34773 * 127.84199 * 219.58764 * 9 8 7 11 11 O 1.21586 * 120.00323 * 174.44169 * 10 9 8 12 12 C 1.47541 * 119.99799 * 354.43842 * 10 9 8 13 13 C 1.39665 * 120.19325 * 324.99057 * 12 10 9 14 14 C 1.37833 * 119.91689 * 180.23311 * 13 12 10 15 15 C 1.38579 * 120.32132 * 359.46763 * 14 13 12 16 16 C 1.38030 * 120.40026 * 0.55398 * 15 14 13 17 17 C 1.38832 * 120.07020 * 359.70502 * 16 15 14 18 18 O 1.35519 * 120.15837 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00425 * 5.57297 * 18 17 16 20 20 H 1.08003 * 119.99472 * 5.33519 * 19 18 17 21 21 C 1.38691 * 120.00431 * 185.34118 * 19 18 17 22 22 N 1.31516 * 120.00401 * 179.97438 * 21 19 18 23 23 Si 1.86809 * 119.99913 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 90.00147 * 23 21 19 25 25 H 1.48500 * 109.46864 * 210.00267 * 23 21 19 26 26 H 1.48501 * 109.47068 * 330.00156 * 23 21 19 27 27 C 1.48147 * 104.32150 * 39.84676 * 9 8 7 28 28 H 1.09000 * 109.46791 * 59.99549 * 1 2 3 29 29 H 1.08990 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46656 * 299.99702 * 1 2 3 31 31 H 1.09003 * 109.47387 * 240.00236 * 2 1 3 32 32 H 1.08997 * 109.47289 * 120.00367 * 2 1 3 33 33 H 1.09005 * 109.46825 * 65.03500 * 3 2 1 34 34 H 1.09002 * 109.47132 * 305.03659 * 3 2 1 35 35 H 1.09006 * 109.47107 * 182.72787 * 5 4 3 36 36 H 1.09008 * 109.46968 * 302.72215 * 5 4 3 37 37 H 0.96700 * 114.00552 * 180.02562 * 6 5 4 38 38 H 1.08996 * 110.34677 * 122.25652 * 7 4 3 39 39 H 1.09009 * 110.34276 * 0.02562 * 7 4 3 40 40 H 1.09001 * 110.40948 * 217.34966 * 8 7 4 41 41 H 1.09008 * 110.40725 * 94.91818 * 8 7 4 42 42 H 1.07995 * 120.04767 * 359.95470 * 13 12 10 43 43 H 1.07989 * 119.84063 * 179.74502 * 14 13 12 44 44 H 1.07996 * 119.80230 * 180.30754 * 15 14 13 45 45 H 1.07998 * 119.96401 * 179.72571 * 16 15 14 46 46 H 0.96996 * 120.00760 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.40767 * 78.93789 * 27 9 8 48 48 H 1.09002 * 110.40957 * 201.37058 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4443 -0.1266 5 6 3.9840 0.9205 -1.5017 6 8 3.4836 1.7931 -2.5166 7 6 4.1967 0.5867 0.9895 8 6 5.0789 1.5659 1.7934 9 7 5.3863 2.6594 0.8423 10 6 6.5526 3.3165 0.6869 11 8 6.6790 4.1269 -0.2108 12 6 7.6762 3.0527 1.6060 13 6 7.4313 2.7697 2.9516 14 6 8.4855 2.5288 3.8063 15 6 9.7884 2.5550 3.3349 16 6 10.0456 2.8337 2.0078 17 6 8.9965 3.0840 1.1336 18 8 9.2470 3.3583 -0.1697 19 6 10.5271 3.2597 -0.5810 20 1 11.2844 2.8903 0.0947 21 6 10.8717 3.6328 -1.8716 22 7 12.1205 3.5371 -2.2726 23 14 9.5617 4.2712 -3.0405 24 1 9.4568 5.7466 -2.9080 25 1 9.9323 3.9245 -4.4361 26 1 8.2549 3.6499 -2.7064 27 6 4.1187 2.8710 0.1052 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7523 1.9296 0.9317 34 1 1.6050 1.9817 -0.8414 35 1 5.0719 0.8820 -1.5596 36 1 3.5767 -0.0797 -1.6491 37 1 3.7116 1.5216 -3.4163 38 1 4.8072 -0.2066 0.5582 39 1 3.4208 0.1638 1.6277 40 1 5.9965 1.0738 2.1160 41 1 4.5315 1.9526 2.6531 42 1 6.4176 2.7440 3.3230 43 1 8.2949 2.3142 4.8473 44 1 10.6077 2.3601 4.0109 45 1 11.0639 2.8566 1.6489 46 1 12.3615 3.7976 -3.1753 47 1 3.4236 3.4583 0.7053 48 1 4.3108 3.3646 -0.8474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290749902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:01 Heat of formation + Delta-G solvation = -110.566634 kcal Electronic energy + Delta-G solvation = -29777.038187 eV Core-core repulsion = 25796.641746 eV Total energy + Delta-G solvation = -3980.396441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67706 -40.72647 -39.26225 -38.18256 -37.19134 -35.71924 -34.56265 -32.98235 -31.71971 -30.86005 -30.35014 -27.67397 -27.13162 -27.03569 -24.78925 -23.65970 -23.09624 -22.41387 -20.81105 -19.95718 -19.84122 -18.89678 -18.31904 -17.89363 -17.22809 -17.04273 -16.49731 -16.42733 -16.18940 -15.79139 -15.53571 -15.36811 -15.20753 -15.00689 -14.56588 -14.38042 -14.19589 -14.11607 -14.07727 -13.88210 -13.40517 -13.24406 -13.08151 -12.88955 -12.80256 -12.63674 -12.58871 -12.37496 -12.16665 -12.09903 -11.87873 -11.62306 -11.55920 -11.39420 -11.15401 -11.01652 -10.90152 -10.74914 -9.91665 -9.70669 -9.16825 -8.62226 -6.30823 0.09772 0.61800 1.16447 1.23706 1.47197 1.81400 2.02315 2.21380 2.69220 2.99262 3.05727 3.16725 3.45482 3.60988 3.82140 3.88213 4.02383 4.13760 4.21825 4.25671 4.27648 4.37446 4.42575 4.48133 4.50431 4.52791 4.64143 4.68384 4.70290 4.77902 4.83890 4.88048 4.95290 5.02138 5.03696 5.10903 5.13470 5.22161 5.27992 5.35095 5.46391 5.49271 5.49970 5.58818 5.61676 5.67102 5.81626 6.13816 6.54639 6.74721 6.76403 7.23071 7.54231 8.48853 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.004056 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.806640 B = 6901.002274 C = 8669.904528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.063 4.063 5 C 0.087 3.913 6 O -0.586 6.586 7 C -0.120 4.120 8 C 0.090 3.910 9 N -0.624 5.624 10 C 0.577 3.423 11 O -0.586 6.586 12 C -0.224 4.224 13 C -0.033 4.033 14 C -0.183 4.183 15 C -0.044 4.044 16 C -0.246 4.246 17 C 0.158 3.842 18 O -0.226 6.226 19 C -0.399 4.399 20 H 0.095 0.905 21 C 0.029 3.971 22 N -0.909 5.909 23 Si 0.954 3.046 24 H -0.277 1.277 25 H -0.258 1.258 26 H -0.281 1.281 27 C 0.113 3.887 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.392 0.608 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.162 0.838 43 H 0.170 0.830 44 H 0.153 0.847 45 H 0.116 0.884 46 H 0.287 0.713 47 H 0.088 0.912 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 -11.124 12.126 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.064 4.064 5 C 0.010 3.990 6 O -0.394 6.394 7 C -0.158 4.158 8 C -0.031 4.031 9 N -0.358 5.358 10 C 0.369 3.631 11 O -0.467 6.467 12 C -0.228 4.228 13 C -0.051 4.051 14 C -0.201 4.201 15 C -0.062 4.062 16 C -0.265 4.265 17 C 0.106 3.894 18 O -0.131 6.131 19 C -0.476 4.476 20 H 0.112 0.888 21 C -0.172 4.172 22 N -0.549 5.549 23 Si 0.778 3.222 24 H -0.202 1.202 25 H -0.182 1.182 26 H -0.207 1.207 27 C -0.010 4.010 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.240 0.760 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.171 0.829 45 H 0.134 0.866 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.391 -10.234 11.774 27.289 hybrid contribution 0.821 0.438 -1.864 2.083 sum -21.570 -9.796 9.910 25.680 Atomic orbital electron populations 1.21754 0.95459 1.01893 1.01753 1.21613 0.96083 0.95662 1.02611 1.21524 0.90782 0.98280 1.02541 1.21590 0.97407 0.93753 0.93681 1.22282 0.95519 0.93289 0.87959 1.86399 1.79362 1.54430 1.19187 1.22757 0.99683 0.96975 0.96391 1.22916 1.00557 0.86970 0.92676 1.48881 1.09696 1.37493 1.39710 1.18127 0.81787 0.79875 0.83296 1.90769 1.82421 1.37927 1.35582 1.19135 0.89176 1.17995 0.96541 1.21398 1.01312 0.93314 0.89101 1.21250 0.91063 1.06453 1.01337 1.21452 0.98868 0.92889 0.92992 1.21322 0.98393 1.11083 0.95706 1.19695 0.93779 0.92115 0.83854 1.83694 1.29227 1.77609 1.22558 1.20853 0.82615 1.44577 0.99510 0.88804 1.24966 0.97939 0.96304 0.97975 1.69663 1.17125 1.47723 1.20387 0.85468 0.79277 0.79035 0.78371 1.20237 1.18174 1.20685 1.22518 0.84240 0.97778 0.96423 0.93624 0.92179 0.92143 0.92549 0.90038 0.90195 0.92518 0.96937 0.90705 0.75954 0.90955 0.85752 0.89565 0.87454 0.82064 0.81285 0.82898 0.86608 0.90355 0.89406 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.38 5.41 30.59 0.17 -1.21 16 3 C -0.09 -1.41 4.12 30.59 0.13 -1.29 16 4 C -0.06 -1.28 0.57 -51.14 -0.03 -1.31 16 5 C 0.09 2.04 5.59 71.98 0.40 2.45 16 6 O -0.59 -14.98 12.23 -148.98 -1.82 -16.80 16 7 C -0.12 -1.84 5.80 31.50 0.18 -1.66 16 8 C 0.09 1.73 5.21 86.53 0.45 2.18 16 9 N -0.62 -19.89 3.31 -810.89 -2.68 -22.57 16 10 C 0.58 25.52 7.44 86.70 0.64 26.16 16 11 O -0.59 -32.90 16.19 12.99 0.21 -32.69 16 12 C -0.22 -9.29 5.50 -19.99 -0.11 -9.40 16 13 C -0.03 -0.94 7.91 22.52 0.18 -0.76 16 14 C -0.18 -4.54 10.03 22.26 0.22 -4.31 16 15 C -0.04 -1.34 10.03 22.30 0.22 -1.12 16 16 C -0.25 -10.59 9.13 22.36 0.20 -10.38 16 17 C 0.16 7.86 6.63 22.90 0.15 8.01 16 18 O -0.23 -13.56 7.22 -3.14 -0.02 -13.58 16 19 C -0.40 -24.79 9.90 67.93 0.67 -24.12 16 20 H 0.09 5.84 5.52 -2.91 -0.02 5.83 16 21 C 0.03 1.76 5.49 84.85 0.47 2.23 16 22 N -0.91 -55.98 13.96 21.62 0.30 -55.68 16 23 Si 0.95 52.20 28.62 68.60 1.96 54.17 16 24 H -0.28 -15.10 7.11 99.48 0.71 -14.39 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.28 -16.78 7.11 99.48 0.71 -16.07 16 27 C 0.11 3.22 6.09 86.67 0.53 3.74 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.71 6.44 -2.39 -0.02 0.70 16 32 H 0.08 0.66 6.41 -2.39 -0.02 0.64 16 33 H 0.08 0.98 7.98 -2.38 -0.02 0.97 16 34 H 0.06 1.08 7.63 -2.39 -0.02 1.06 16 35 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.07 1.33 6.50 -2.38 -0.02 1.31 16 37 H 0.39 7.17 9.12 -74.06 -0.68 6.50 16 38 H 0.07 1.19 7.71 -2.39 -0.02 1.17 16 39 H 0.12 1.01 6.09 -2.38 -0.01 1.00 16 40 H 0.09 1.71 6.42 -2.39 -0.02 1.69 16 41 H 0.11 1.32 7.89 -2.38 -0.02 1.30 16 42 H 0.16 3.21 6.21 -2.91 -0.02 3.19 16 43 H 0.17 2.54 8.06 -2.92 -0.02 2.52 16 44 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 45 H 0.12 5.44 5.71 -2.91 -0.02 5.42 16 46 H 0.29 16.23 8.31 -92.71 -0.77 15.46 16 47 H 0.09 2.10 7.76 -2.39 -0.02 2.08 16 48 H 0.05 1.74 6.98 -2.39 -0.02 1.73 16 Total: -1.00 -86.70 378.96 3.46 -83.24 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.31 Total: 15.56 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 5.19 Total: -11.65 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.38 Total: -78.25 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -1.64 Total: -63.08 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.96 Total: 54.17 kcal Total: -86.70 3.46 -83.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290749902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.322 kcal (2) G-P(sol) polarization free energy of solvation -86.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds