Wall clock time and date at job start Tue Mar 31 2020 18:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47472 * 2 1 4 4 C 1.52998 * 109.47043 * 185.22624 * 3 2 1 5 5 C 1.53003 * 110.30776 * 302.66790 * 4 3 2 6 6 O 1.42901 * 109.47071 * 297.51986 * 5 4 3 7 7 C 1.54279 * 110.34681 * 64.84611 * 4 3 2 8 8 C 1.54393 * 104.96240 * 118.97222 * 7 4 3 9 9 N 1.48144 * 104.61499 * 336.13579 * 8 7 4 10 10 C 1.34774 * 127.83894 * 219.58181 * 9 8 7 11 11 O 1.21590 * 120.00340 * 184.22276 * 10 9 8 12 12 C 1.47541 * 119.99868 * 4.21472 * 10 9 8 13 13 C 1.39663 * 120.19690 * 322.52748 * 12 10 9 14 14 C 1.37832 * 119.91668 * 179.97438 * 13 12 10 15 15 C 1.38576 * 120.32378 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.39989 * 359.97438 * 15 14 13 17 17 C 1.38838 * 120.07374 * 359.76890 * 16 15 14 18 18 O 1.35522 * 120.16040 * 180.25274 * 17 16 15 19 19 C 1.34818 * 116.99955 * 6.28332 * 18 17 16 20 20 H 1.07992 * 120.00272 * 5.56007 * 19 18 17 21 21 C 1.38698 * 119.99503 * 185.55915 * 19 18 17 22 22 N 1.31528 * 119.99671 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00650 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46976 * 89.99491 * 23 21 19 25 25 H 1.48490 * 109.47378 * 209.99994 * 23 21 19 26 26 H 1.48502 * 109.46788 * 330.00085 * 23 21 19 27 27 C 1.48153 * 104.32663 * 39.58486 * 9 8 7 28 28 H 1.09004 * 109.47221 * 300.00202 * 1 2 3 29 29 H 1.09007 * 109.46967 * 59.99849 * 1 2 3 30 30 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47221 * 239.99798 * 2 1 3 32 32 H 1.09001 * 109.47318 * 119.99918 * 2 1 3 33 33 H 1.09002 * 109.46793 * 65.22213 * 3 2 1 34 34 H 1.08997 * 109.46973 * 305.22425 * 3 2 1 35 35 H 1.09005 * 109.46484 * 57.51413 * 5 4 3 36 36 H 1.08989 * 109.47304 * 177.51798 * 5 4 3 37 37 H 0.96699 * 113.99781 * 179.97438 * 6 5 4 38 38 H 1.09004 * 110.34333 * 0.10707 * 7 4 3 39 39 H 1.09001 * 110.43505 * 237.89194 * 7 4 3 40 40 H 1.09001 * 110.40208 * 94.91967 * 8 7 4 41 41 H 1.08994 * 110.40677 * 217.35163 * 8 7 4 42 42 H 1.07993 * 120.04258 * 0.02562 * 13 12 10 43 43 H 1.08000 * 119.83369 * 179.97438 * 14 13 12 44 44 H 1.07998 * 119.79234 * 179.97438 * 15 14 13 45 45 H 1.08007 * 119.96225 * 180.02562 * 16 15 14 46 46 H 0.97001 * 119.99736 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.40507 * 201.62752 * 27 9 8 48 48 H 1.08997 * 110.50615 * 79.24500 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5644 1.4444 -0.1314 5 6 4.1961 0.6342 1.0024 6 8 3.8833 1.2449 2.2559 7 6 3.9856 0.8702 -1.5000 8 6 4.7430 2.0200 -2.1986 9 7 4.2301 3.2514 -1.5541 10 6 3.9432 4.4319 -2.1376 11 8 3.5998 5.3791 -1.4568 12 6 4.0458 4.5751 -3.6024 13 6 5.0706 3.9327 -4.3009 14 6 5.1608 4.0700 -5.6694 15 6 4.2387 4.8425 -6.3573 16 6 3.2201 5.4822 -5.6805 17 6 3.1105 5.3510 -4.3027 18 8 2.1080 5.9743 -3.6370 19 6 1.1745 6.5996 -4.3821 20 1 1.1960 6.5135 -5.4584 21 6 0.1866 7.3536 -3.7663 22 7 -0.7244 7.9632 -4.4932 23 14 0.1497 7.5032 -1.9047 24 1 0.9584 8.6763 -1.4863 25 1 -1.2527 7.6811 -1.4501 26 1 0.7142 6.2710 -1.2979 27 6 4.1042 2.8908 -0.1227 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7551 1.9286 0.9331 34 1 1.6024 1.9826 -0.8395 35 1 3.8028 -0.3823 0.9853 36 1 5.2777 0.6076 0.8711 37 1 4.2522 0.7831 3.0213 38 1 3.1064 0.5886 -2.0796 39 1 4.6419 0.0103 -1.3663 40 1 5.8161 1.9234 -2.0339 41 1 4.5205 2.0286 -3.2656 42 1 5.7909 3.3286 -3.7695 43 1 5.9540 3.5730 -6.2081 44 1 4.3177 4.9445 -7.4296 45 1 2.5050 6.0822 -6.2238 46 1 -1.4151 8.4908 -4.0625 47 1 3.4000 3.5564 0.3764 48 1 5.0767 2.9306 0.3680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290749904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:06 Heat of formation + Delta-G solvation = -85.237373 kcal Electronic energy + Delta-G solvation = -29924.979577 eV Core-core repulsion = 25945.681495 eV Total energy + Delta-G solvation = -3979.298082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.35901 -39.28272 -37.79115 -36.52924 -36.21149 -34.68657 -32.45095 -31.85707 -30.43791 -29.43214 -29.18562 -26.43087 -26.10665 -25.21928 -23.65974 -22.37280 -21.78427 -21.25389 -19.41596 -18.96044 -17.97138 -17.58226 -17.10921 -16.50638 -15.95780 -15.65267 -15.29543 -15.07134 -14.66049 -14.53944 -13.97500 -13.89085 -13.69686 -13.66705 -13.36770 -13.29816 -12.96562 -12.63284 -12.58451 -12.35311 -12.24844 -12.12430 -11.97138 -11.50543 -11.45391 -11.42303 -11.23794 -11.12769 -10.78282 -10.72165 -10.63950 -10.55513 -10.37284 -10.11747 -10.07063 -9.62903 -9.13982 -8.89215 -8.41603 -8.34063 -7.48167 -6.46926 -4.12704 1.65347 2.17429 3.24716 3.30233 3.37470 3.47277 3.61019 3.91758 4.32413 4.40283 4.48272 4.56868 4.64272 4.73541 4.94651 5.01621 5.06417 5.09792 5.11438 5.17058 5.21465 5.28371 5.41080 5.46045 5.53129 5.62489 5.64922 5.67833 5.76882 5.79542 5.85945 5.90860 5.95367 6.01832 6.07773 6.08154 6.19615 6.26877 6.36873 6.40085 6.48875 6.63469 6.86469 7.02443 7.15747 7.41769 7.47965 7.67923 7.94708 7.95925 8.78975 8.88679 9.50470 10.58691 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.004512 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.348148 B = 6204.729564 C = 7679.129949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.070 4.070 5 C 0.090 3.910 6 O -0.566 6.566 7 C -0.126 4.126 8 C 0.096 3.904 9 N -0.627 5.627 10 C 0.591 3.409 11 O -0.522 6.522 12 C -0.215 4.215 13 C -0.048 4.048 14 C -0.218 4.218 15 C -0.054 4.054 16 C -0.224 4.224 17 C 0.200 3.800 18 O -0.181 6.181 19 C -0.394 4.394 20 H 0.109 0.891 21 C 0.072 3.928 22 N -0.870 5.870 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.248 1.248 27 C 0.125 3.875 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.376 0.624 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.281 0.719 47 H 0.083 0.917 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.718 -19.177 6.947 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.071 4.071 5 C 0.012 3.988 6 O -0.371 6.371 7 C -0.164 4.164 8 C -0.028 4.028 9 N -0.363 5.363 10 C 0.383 3.617 11 O -0.397 6.397 12 C -0.220 4.220 13 C -0.066 4.066 14 C -0.237 4.237 15 C -0.072 4.072 16 C -0.243 4.243 17 C 0.143 3.857 18 O -0.083 6.083 19 C -0.469 4.469 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.506 5.506 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.172 1.172 27 C 0.002 3.998 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.222 0.778 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.156 0.844 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.886 -17.902 7.117 21.653 hybrid contribution 0.209 -0.260 0.829 0.894 sum 10.094 -18.163 7.946 22.247 Atomic orbital electron populations 1.21773 0.95918 1.01218 1.02181 1.21582 0.95906 0.96958 1.01469 1.21606 0.92693 0.96833 1.02976 1.21530 0.96697 0.95345 0.93527 1.22274 0.97628 0.95246 0.83615 1.86545 1.78847 1.56077 1.15655 1.22657 1.01101 0.97715 0.94971 1.22560 0.97415 0.83669 0.99136 1.48851 1.67149 1.11604 1.08744 1.17836 0.75976 0.80519 0.87398 1.90804 1.46387 1.37674 1.64854 1.18725 1.02220 1.09141 0.91918 1.20911 0.95629 0.95949 0.94146 1.20551 1.02612 1.06643 0.93931 1.20956 0.93156 0.94181 0.98943 1.21265 1.02581 1.06637 0.93839 1.18957 0.86775 0.89620 0.90313 1.83705 1.30453 1.58534 1.35571 1.20860 1.04265 1.29160 0.92660 0.87416 1.24469 0.94229 0.94054 1.00587 1.69638 1.14536 1.29763 1.36702 0.86204 0.76848 0.81092 0.83289 1.19682 1.20991 1.17168 1.22157 1.00817 0.94117 0.82695 0.92779 0.92526 0.93053 0.92079 0.92219 0.91109 0.91452 0.93095 0.93668 0.77765 0.90033 0.90475 0.91460 0.89099 0.86285 0.86969 0.86826 0.84396 0.90843 0.89865 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.20 5.23 -26.73 -0.14 -1.34 16 3 C -0.10 -1.30 3.88 -26.73 -0.10 -1.40 16 4 C -0.07 -0.78 0.56 -153.11 -0.09 -0.86 16 5 C 0.09 0.76 5.26 37.16 0.20 0.95 16 6 O -0.57 -5.28 12.87 -35.23 -0.45 -5.74 16 7 C -0.13 -1.21 5.71 -25.33 -0.14 -1.36 16 8 C 0.10 1.11 5.34 -2.41 -0.01 1.10 16 9 N -0.63 -10.35 3.32 -170.52 -0.57 -10.91 16 10 C 0.59 12.77 7.41 -12.47 -0.09 12.68 16 11 O -0.52 -13.67 16.35 -11.44 -0.19 -13.85 16 12 C -0.22 -4.52 5.57 -104.81 -0.58 -5.10 16 13 C -0.05 -0.79 7.78 -39.20 -0.31 -1.09 16 14 C -0.22 -3.40 10.03 -39.61 -0.40 -3.80 16 15 C -0.05 -0.93 10.03 -39.54 -0.40 -1.32 16 16 C -0.22 -4.78 9.12 -39.44 -0.36 -5.13 16 17 C 0.20 4.80 6.62 -38.60 -0.26 4.55 16 18 O -0.18 -5.08 7.30 -15.94 -0.12 -5.19 16 19 C -0.39 -11.39 9.90 30.90 0.31 -11.09 16 20 H 0.11 3.09 5.54 -52.49 -0.29 2.80 16 21 C 0.07 2.09 5.49 -17.51 -0.10 1.99 16 22 N -0.87 -25.47 13.96 55.48 0.77 -24.70 16 23 Si 0.90 23.66 28.62 -169.99 -4.86 18.79 16 24 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.25 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.12 1.83 5.82 -2.40 -0.01 1.82 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.55 6.70 -51.93 -0.35 0.21 16 32 H 0.06 0.53 6.70 -51.93 -0.35 0.18 16 33 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.36 6.45 -51.93 -0.33 0.02 16 36 H 0.05 0.32 8.14 -51.94 -0.42 -0.10 16 37 H 0.38 1.75 9.12 45.56 0.42 2.17 16 38 H 0.08 0.82 6.77 -51.93 -0.35 0.47 16 39 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 40 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.09 1.09 5.75 -51.93 -0.30 0.79 16 42 H 0.12 1.58 6.06 -52.49 -0.32 1.26 16 43 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 45 H 0.14 3.05 5.73 -52.48 -0.30 2.75 16 46 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.08 1.47 7.64 -51.93 -0.40 1.07 16 48 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -34.83 380.55 -8.10 -42.93 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.30 Total: 3.55 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.12 Total: -10.62 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.21 Total: -35.61 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.76 Total: -24.78 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.86 Total: 18.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.83 -8.10 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290749904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.310 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds