Wall clock time and date at job start Tue Mar 31 2020 18:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47472 * 2 1 4 4 C 1.52998 * 109.47043 * 185.22624 * 3 2 1 5 5 C 1.53003 * 110.30776 * 302.66790 * 4 3 2 6 6 O 1.42901 * 109.47071 * 297.51986 * 5 4 3 7 7 C 1.54279 * 110.34681 * 64.84611 * 4 3 2 8 8 C 1.54393 * 104.96240 * 118.97222 * 7 4 3 9 9 N 1.48144 * 104.61499 * 336.13579 * 8 7 4 10 10 C 1.34774 * 127.83894 * 219.58181 * 9 8 7 11 11 O 1.21590 * 120.00340 * 184.22276 * 10 9 8 12 12 C 1.47541 * 119.99868 * 4.21472 * 10 9 8 13 13 C 1.39663 * 120.19690 * 322.52748 * 12 10 9 14 14 C 1.37832 * 119.91668 * 179.97438 * 13 12 10 15 15 C 1.38576 * 120.32378 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.39989 * 359.97438 * 15 14 13 17 17 C 1.38838 * 120.07374 * 359.76890 * 16 15 14 18 18 O 1.35522 * 120.16040 * 180.25274 * 17 16 15 19 19 C 1.34818 * 116.99955 * 6.28332 * 18 17 16 20 20 H 1.07992 * 120.00272 * 5.56007 * 19 18 17 21 21 C 1.38698 * 119.99503 * 185.55915 * 19 18 17 22 22 N 1.31528 * 119.99671 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00650 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46976 * 89.99491 * 23 21 19 25 25 H 1.48490 * 109.47378 * 209.99994 * 23 21 19 26 26 H 1.48502 * 109.46788 * 330.00085 * 23 21 19 27 27 C 1.48153 * 104.32663 * 39.58486 * 9 8 7 28 28 H 1.09004 * 109.47221 * 300.00202 * 1 2 3 29 29 H 1.09007 * 109.46967 * 59.99849 * 1 2 3 30 30 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47221 * 239.99798 * 2 1 3 32 32 H 1.09001 * 109.47318 * 119.99918 * 2 1 3 33 33 H 1.09002 * 109.46793 * 65.22213 * 3 2 1 34 34 H 1.08997 * 109.46973 * 305.22425 * 3 2 1 35 35 H 1.09005 * 109.46484 * 57.51413 * 5 4 3 36 36 H 1.08989 * 109.47304 * 177.51798 * 5 4 3 37 37 H 0.96699 * 113.99781 * 179.97438 * 6 5 4 38 38 H 1.09004 * 110.34333 * 0.10707 * 7 4 3 39 39 H 1.09001 * 110.43505 * 237.89194 * 7 4 3 40 40 H 1.09001 * 110.40208 * 94.91967 * 8 7 4 41 41 H 1.08994 * 110.40677 * 217.35163 * 8 7 4 42 42 H 1.07993 * 120.04258 * 0.02562 * 13 12 10 43 43 H 1.08000 * 119.83369 * 179.97438 * 14 13 12 44 44 H 1.07998 * 119.79234 * 179.97438 * 15 14 13 45 45 H 1.08007 * 119.96225 * 180.02562 * 16 15 14 46 46 H 0.97001 * 119.99736 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.40507 * 201.62752 * 27 9 8 48 48 H 1.08997 * 110.50615 * 79.24500 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5644 1.4444 -0.1314 5 6 4.1961 0.6342 1.0024 6 8 3.8833 1.2449 2.2559 7 6 3.9856 0.8702 -1.5000 8 6 4.7430 2.0200 -2.1986 9 7 4.2301 3.2514 -1.5541 10 6 3.9432 4.4319 -2.1376 11 8 3.5998 5.3791 -1.4568 12 6 4.0458 4.5751 -3.6024 13 6 5.0706 3.9327 -4.3009 14 6 5.1608 4.0700 -5.6694 15 6 4.2387 4.8425 -6.3573 16 6 3.2201 5.4822 -5.6805 17 6 3.1105 5.3510 -4.3027 18 8 2.1080 5.9743 -3.6370 19 6 1.1745 6.5996 -4.3821 20 1 1.1960 6.5135 -5.4584 21 6 0.1866 7.3536 -3.7663 22 7 -0.7244 7.9632 -4.4932 23 14 0.1497 7.5032 -1.9047 24 1 0.9584 8.6763 -1.4863 25 1 -1.2527 7.6811 -1.4501 26 1 0.7142 6.2710 -1.2979 27 6 4.1042 2.8908 -0.1227 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7551 1.9286 0.9331 34 1 1.6024 1.9826 -0.8395 35 1 3.8028 -0.3823 0.9853 36 1 5.2777 0.6076 0.8711 37 1 4.2522 0.7831 3.0213 38 1 3.1064 0.5886 -2.0796 39 1 4.6419 0.0103 -1.3663 40 1 5.8161 1.9234 -2.0339 41 1 4.5205 2.0286 -3.2656 42 1 5.7909 3.3286 -3.7695 43 1 5.9540 3.5730 -6.2081 44 1 4.3177 4.9445 -7.4296 45 1 2.5050 6.0822 -6.2238 46 1 -1.4151 8.4908 -4.0625 47 1 3.4000 3.5564 0.3764 48 1 5.0767 2.9306 0.3680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290749904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:05 Heat of formation + Delta-G solvation = -110.441514 kcal Electronic energy + Delta-G solvation = -29926.072511 eV Core-core repulsion = 25945.681495 eV Total energy + Delta-G solvation = -3980.391016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.69776 -40.72730 -39.27899 -38.19775 -37.12978 -35.69274 -34.56920 -33.06714 -31.78449 -30.88402 -30.35327 -27.71657 -27.21024 -26.87781 -24.84907 -23.58500 -23.12581 -22.52691 -20.88636 -20.00582 -19.88062 -18.87357 -18.23837 -17.90067 -17.08535 -17.01276 -16.50984 -16.36325 -16.13936 -15.93109 -15.67579 -15.47247 -15.20070 -14.88083 -14.55900 -14.36307 -14.20647 -14.13868 -14.00403 -13.89569 -13.48042 -13.29749 -13.18083 -13.00363 -12.81579 -12.65450 -12.43747 -12.39978 -12.29286 -12.15353 -11.92785 -11.61714 -11.50781 -11.46660 -11.24049 -11.02333 -10.85746 -10.68701 -9.91548 -9.71634 -9.16932 -8.63380 -6.31589 0.10502 0.60919 1.14688 1.21184 1.44826 1.76604 2.03169 2.19597 2.67977 2.98772 3.04508 3.18235 3.58150 3.63018 3.77102 3.86304 4.00822 4.11013 4.21493 4.27428 4.29980 4.34018 4.40566 4.46451 4.48626 4.54279 4.58929 4.65700 4.71880 4.76992 4.78014 4.89073 4.91500 4.98033 4.99248 5.03545 5.11184 5.20217 5.24216 5.28845 5.34556 5.45278 5.45682 5.48027 5.60798 5.66113 5.80987 6.13361 6.53243 6.73784 7.03208 7.20957 7.53481 8.47796 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.004512 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.348148 B = 6204.729564 C = 7679.129949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.102 4.102 4 C -0.066 4.066 5 C 0.094 3.906 6 O -0.595 6.595 7 C -0.118 4.118 8 C 0.085 3.915 9 N -0.624 5.624 10 C 0.577 3.423 11 O -0.589 6.589 12 C -0.223 4.223 13 C -0.037 4.037 14 C -0.181 4.181 15 C -0.045 4.045 16 C -0.244 4.244 17 C 0.157 3.843 18 O -0.229 6.229 19 C -0.399 4.399 20 H 0.095 0.905 21 C 0.030 3.970 22 N -0.908 5.908 23 Si 0.950 3.050 24 H -0.275 1.275 25 H -0.257 1.257 26 H -0.284 1.284 27 C 0.120 3.880 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.396 0.604 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.165 0.835 43 H 0.171 0.829 44 H 0.154 0.846 45 H 0.116 0.884 46 H 0.286 0.714 47 H 0.034 0.966 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.094 -24.109 6.272 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.140 4.140 4 C -0.067 4.067 5 C 0.017 3.983 6 O -0.403 6.403 7 C -0.155 4.155 8 C -0.036 4.036 9 N -0.357 5.357 10 C 0.369 3.631 11 O -0.470 6.470 12 C -0.227 4.227 13 C -0.055 4.055 14 C -0.199 4.199 15 C -0.063 4.063 16 C -0.264 4.264 17 C 0.104 3.896 18 O -0.134 6.134 19 C -0.475 4.475 20 H 0.113 0.887 21 C -0.170 4.170 22 N -0.548 5.548 23 Si 0.775 3.225 24 H -0.200 1.200 25 H -0.182 1.182 26 H -0.210 1.210 27 C -0.002 4.002 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.144 0.856 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.182 0.818 43 H 0.189 0.811 44 H 0.172 0.828 45 H 0.134 0.866 46 H 0.096 0.904 47 H 0.052 0.948 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.316 -22.929 6.437 27.787 hybrid contribution -0.773 0.987 0.952 1.574 sum 13.543 -21.942 7.389 26.823 Atomic orbital electron populations 1.21809 0.96648 1.02146 1.00833 1.21541 0.95274 0.94841 1.03233 1.21543 0.94421 0.98245 0.99774 1.21551 0.95245 0.93385 0.96488 1.22307 0.98834 0.95203 0.81976 1.86515 1.79546 1.57308 1.16954 1.22688 1.01616 0.98259 0.92985 1.23035 0.99837 0.81628 0.99106 1.48897 1.65206 1.11540 1.10100 1.18137 0.75783 0.81384 0.87786 1.90760 1.49593 1.40502 1.66152 1.19124 1.02665 1.08918 0.92014 1.21449 0.94308 0.94806 0.94931 1.21262 1.01875 1.03351 0.93454 1.21452 0.91362 0.92501 1.00984 1.21318 1.04152 1.07937 0.92947 1.19686 0.87398 0.90518 0.91950 1.83687 1.32207 1.61427 1.36078 1.20843 1.05182 1.29147 0.92301 0.88743 1.24936 0.94567 0.94649 1.02886 1.69667 1.15758 1.31921 1.37428 0.85519 0.77617 0.78926 0.80419 1.20040 1.18152 1.20973 1.22338 1.00770 0.95677 0.81462 0.93705 0.94461 0.90867 0.90282 0.90108 0.93680 0.95751 0.90553 0.91097 0.75390 0.90679 0.85609 0.87326 0.89032 0.81791 0.81144 0.82843 0.86615 0.90361 0.94752 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.11 -2.01 5.23 30.59 0.16 -1.85 16 3 C -0.10 -2.63 3.88 30.59 0.12 -2.51 16 4 C -0.07 -1.33 0.56 -51.28 -0.03 -1.36 16 5 C 0.09 1.19 5.26 71.98 0.38 1.57 16 6 O -0.59 -9.82 12.87 -148.98 -1.92 -11.74 16 7 C -0.12 -1.74 5.71 31.50 0.18 -1.56 16 8 C 0.08 1.61 5.34 86.54 0.46 2.07 16 9 N -0.62 -20.30 3.32 -811.68 -2.69 -22.99 16 10 C 0.58 25.97 7.41 86.70 0.64 26.61 16 11 O -0.59 -33.54 16.35 11.99 0.20 -33.35 16 12 C -0.22 -9.37 5.57 -19.99 -0.11 -9.48 16 13 C -0.04 -1.05 7.78 22.52 0.18 -0.88 16 14 C -0.18 -4.51 10.03 22.25 0.22 -4.28 16 15 C -0.04 -1.38 10.03 22.30 0.22 -1.16 16 16 C -0.24 -10.63 9.12 22.36 0.20 -10.42 16 17 C 0.16 7.90 6.62 22.91 0.15 8.05 16 18 O -0.23 -13.93 7.30 -4.13 -0.03 -13.96 16 19 C -0.40 -25.02 9.90 67.93 0.67 -24.35 16 20 H 0.10 5.94 5.54 -2.91 -0.02 5.92 16 21 C 0.03 1.88 5.49 84.85 0.47 2.34 16 22 N -0.91 -56.41 13.96 21.62 0.30 -56.11 16 23 Si 0.95 53.02 28.62 68.60 1.96 54.99 16 24 H -0.27 -15.20 7.11 99.48 0.71 -14.49 16 25 H -0.26 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.28 -17.35 7.11 99.48 0.71 -16.65 16 27 C 0.12 3.53 5.82 86.53 0.50 4.03 16 28 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.16 6.70 -2.38 -0.02 1.15 16 32 H 0.08 1.15 6.70 -2.39 -0.02 1.14 16 33 H 0.04 1.35 7.88 -2.39 -0.02 1.34 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.62 6.45 -2.38 -0.02 0.61 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.40 2.59 9.12 -74.06 -0.68 1.91 16 38 H 0.07 1.26 6.77 -2.38 -0.02 1.24 16 39 H 0.13 0.76 7.72 -2.39 -0.02 0.74 16 40 H 0.11 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.09 1.74 5.75 -2.39 -0.01 1.73 16 42 H 0.16 3.23 6.06 -2.91 -0.02 3.22 16 43 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.12 5.48 5.73 -2.91 -0.02 5.47 16 46 H 0.29 16.39 8.31 -92.71 -0.77 15.62 16 47 H 0.03 1.33 7.64 -2.39 -0.02 1.31 16 48 H 0.09 2.16 7.86 -2.39 -0.02 2.14 16 Total: -1.00 -90.34 380.55 3.27 -87.08 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.31 Total: 11.71 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.13 Total: -15.63 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -2.39 Total: -79.10 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.75 Total: -59.05 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 1.96 Total: 54.99 kcal Total: -90.34 3.27 -87.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290749904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.366 kcal (2) G-P(sol) polarization free energy of solvation -90.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds