Wall clock time and date at job start Tue Mar 31 2020 17:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38284 * 119.97232 * 2 1 4 4 C 1.38248 * 120.11218 * 179.71862 * 3 2 1 5 5 C 1.38168 * 120.05045 * 0.55291 * 4 3 2 6 6 C 1.50707 * 120.02243 * 179.74588 * 5 4 3 7 7 N 1.46496 * 109.47156 * 259.97248 * 6 5 4 8 8 C 1.34773 * 120.00292 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99898 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00259 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47155 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47203 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99729 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00383 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00352 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99750 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47517 * 89.99829 * 16 14 12 18 18 H 1.48505 * 109.47288 * 209.99797 * 16 14 12 19 19 H 1.48504 * 109.47430 * 329.99335 * 16 14 12 20 20 C 1.38709 * 119.94661 * 359.71746 * 5 4 3 21 21 O 1.35904 * 120.05469 * 179.97438 * 20 5 4 22 22 C 1.42894 * 116.99923 * 174.50836 * 21 20 5 23 23 H 1.09011 * 110.45497 * 326.40507 * 22 21 20 24 24 C 1.54507 * 110.51371 * 203.80398 * 22 21 20 25 25 C 1.54472 * 104.06466 * 241.35327 * 24 22 21 26 26 O 1.44432 * 104.80351 * 23.97871 * 25 24 22 27 27 C 1.44425 * 105.26853 * 319.48723 * 26 25 24 28 28 C 1.38125 * 119.97299 * 180.26541 * 2 1 3 29 29 H 1.09001 * 109.47544 * 269.73039 * 1 2 3 30 30 H 1.09000 * 109.46647 * 29.73276 * 1 2 3 31 31 H 1.09004 * 109.47115 * 149.72651 * 1 2 3 32 32 H 1.08001 * 119.94370 * 359.97430 * 3 2 1 33 33 H 1.07998 * 119.97606 * 180.29414 * 4 3 2 34 34 H 1.09000 * 109.47482 * 19.97474 * 6 5 4 35 35 H 1.09001 * 109.46691 * 139.97562 * 6 5 4 36 36 H 0.97001 * 119.99789 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.47265 * 300.00385 * 10 8 7 38 38 H 1.09004 * 109.46620 * 60.00071 * 10 8 7 39 39 H 1.09000 * 109.47175 * 300.00228 * 11 10 8 40 40 H 1.08995 * 109.47105 * 59.99894 * 11 10 8 41 41 H 0.96997 * 119.99928 * 180.02562 * 15 14 12 42 42 H 1.09007 * 110.51058 * 359.97438 * 24 22 21 43 43 H 1.09000 * 110.51778 * 122.70434 * 24 22 21 44 44 H 1.09004 * 110.37228 * 142.80517 * 25 24 22 45 45 H 1.09001 * 110.37553 * 265.03324 * 25 24 22 46 46 H 1.09004 * 110.37163 * 281.67621 * 27 26 25 47 47 H 1.09000 * 110.36856 * 159.34424 * 27 26 25 48 48 H 1.08004 * 120.02653 * 0.02968 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0059 5 6 4.2752 0.0071 0.0002 6 6 5.7822 0.0115 0.0008 7 7 6.2718 -0.2208 -1.3602 8 6 7.5970 -0.2591 -1.6024 9 8 8.3844 -0.1016 -0.6933 10 6 8.1007 -0.4986 -3.0024 11 6 9.6306 -0.4952 -3.0016 12 6 10.1343 -0.7341 -4.4017 13 1 9.4331 -0.8747 -5.2111 14 6 11.4900 -0.7732 -4.6494 15 7 11.9295 -0.9822 -5.8712 16 14 12.7026 -0.5306 -3.2494 17 1 13.0273 -1.8463 -2.6422 18 1 13.9446 0.0931 -3.7726 19 1 12.1000 0.3543 -2.2202 20 6 3.5845 -1.1959 -0.0054 21 8 4.2658 -2.3718 -0.0115 22 6 3.4944 -3.5690 0.1047 23 1 2.6231 -3.4008 0.7379 24 6 4.3597 -4.7181 0.6687 25 6 4.3498 -5.7806 -0.4525 26 8 4.0714 -5.0397 -1.6606 27 6 3.0639 -4.0733 -1.2905 28 6 2.1971 -1.1965 -0.0055 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3632 0.8924 -0.5097 31 1 -0.3633 -0.8876 -0.5181 32 1 1.6565 2.1324 -0.0004 33 1 4.1176 2.1381 0.0107 34 1 6.1426 0.9767 0.3568 35 1 6.1475 -0.7777 0.6580 36 1 5.6421 -0.3470 -2.0872 37 1 7.7400 -1.4637 -3.3581 38 1 7.7355 0.2905 -3.6598 39 1 9.9917 0.4697 -2.6457 40 1 9.9953 -1.2845 -2.3442 41 1 12.8833 -1.0100 -6.0454 42 1 5.3762 -4.3730 0.8585 43 1 3.9152 -5.1196 1.5794 44 1 5.3223 -6.2680 -0.5219 45 1 3.5686 -6.5184 -0.2692 46 1 2.0842 -4.5481 -1.2369 47 1 3.0486 -3.2492 -2.0037 48 1 1.6570 -2.1318 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291893332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:37 Heat of formation + Delta-G solvation = -105.704658 kcal Electronic energy + Delta-G solvation = -28556.004683 eV Core-core repulsion = 24575.819073 eV Total energy + Delta-G solvation = -3980.185610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05062 -39.56003 -38.89982 -37.47441 -35.10677 -33.38017 -32.71643 -31.91808 -31.18061 -30.19611 -29.33816 -28.59186 -26.15259 -24.38476 -23.86609 -22.99538 -21.49127 -21.14930 -20.94454 -19.58538 -18.23057 -17.25457 -17.01282 -16.64739 -16.28846 -16.06050 -15.77577 -15.38285 -15.15154 -14.89612 -14.83049 -14.51475 -14.02236 -13.94359 -13.73921 -13.31267 -13.15239 -13.07639 -12.85629 -12.57613 -12.49976 -12.47572 -12.14361 -12.01070 -11.92065 -11.63066 -11.53097 -11.32608 -11.16386 -10.94135 -10.88302 -10.11882 -10.07126 -9.95505 -9.71714 -9.33466 -9.10858 -8.96995 -8.71606 -8.43823 -8.39383 -5.96343 -3.94385 0.89692 1.10464 2.76284 3.25105 3.27699 3.43309 3.49290 3.53066 3.61284 3.86763 3.98353 4.30915 4.32609 4.39244 4.51568 4.57316 4.63789 4.65119 4.75769 4.82317 4.90042 5.00188 5.17479 5.20904 5.22789 5.26411 5.35567 5.38790 5.39271 5.40061 5.48029 5.54249 5.61964 5.73011 5.92970 5.96700 6.16052 6.20395 6.22671 6.25922 6.35098 6.49143 6.74831 6.81735 7.10064 7.45989 7.53076 7.85568 7.94545 8.58361 8.79734 9.07556 9.67044 11.16635 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.002909 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.995568 B = 9624.461054 C =11132.942837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 C -0.160 4.160 4 C -0.058 4.058 5 C -0.140 4.140 6 C 0.172 3.828 7 N -0.732 5.732 8 C 0.511 3.489 9 O -0.544 6.544 10 C -0.122 4.122 11 C 0.002 3.998 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.068 3.932 15 N -0.905 5.905 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.149 3.851 21 O -0.288 6.288 22 C 0.050 3.950 23 H 0.089 0.911 24 C -0.153 4.153 25 C 0.044 3.956 26 O -0.361 6.361 27 C 0.025 3.975 28 C -0.215 4.215 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.398 0.602 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.926 -3.231 15.879 33.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.178 4.178 4 C -0.076 4.076 5 C -0.141 4.141 6 C 0.048 3.952 7 N -0.386 5.386 8 C 0.300 3.700 9 O -0.421 6.421 10 C -0.162 4.162 11 C -0.036 4.036 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.544 5.544 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.185 1.185 20 C 0.102 3.898 21 O -0.201 6.201 22 C -0.007 4.007 23 H 0.107 0.893 24 C -0.190 4.190 25 C -0.033 4.033 26 O -0.280 6.280 27 C -0.052 4.052 28 C -0.234 4.234 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.119 0.881 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -27.853 -3.214 16.216 32.390 hybrid contribution -0.029 -0.031 0.539 0.540 sum -27.883 -3.245 16.755 32.691 Atomic orbital electron populations 1.20836 0.90971 1.03050 1.02497 1.19725 0.95999 0.92480 0.96030 1.20945 0.93996 0.97606 1.05274 1.20982 0.93982 0.96952 0.95695 1.19321 0.95723 0.90617 1.08435 1.19876 0.87747 1.01994 0.85559 1.46157 1.07586 1.75370 1.09465 1.21495 0.81085 0.74821 0.92601 1.90639 1.55360 1.49044 1.47039 1.21654 1.00836 1.02930 0.90744 1.19358 0.89066 0.97647 0.97500 1.21138 0.92691 1.49281 0.92928 0.90951 1.24971 0.98431 0.94443 0.95454 1.69917 1.14359 1.50410 1.19739 0.86794 0.80477 0.79148 0.83130 1.20272 1.21516 1.18497 1.18855 0.90260 0.85746 0.94901 1.86308 1.35100 1.11635 1.87094 1.23903 0.94993 0.84385 0.97425 0.89287 1.23094 1.02718 0.93942 0.99286 1.23467 1.02273 0.93900 0.83615 1.89252 1.58286 1.49348 1.31074 1.23975 0.92125 0.93275 0.95853 1.21073 0.92658 0.98892 1.10785 0.90912 0.91144 0.91480 0.85719 0.84957 0.91172 0.90895 0.76853 0.89658 0.89740 0.95871 0.96305 0.92795 0.88521 0.89086 0.88248 0.91935 0.91056 0.88145 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.04 -0.33 5.88 -104.65 -0.62 -0.94 16 3 C -0.16 -1.29 9.70 -39.56 -0.38 -1.68 16 4 C -0.06 -0.54 9.67 -39.60 -0.38 -0.92 16 5 C -0.14 -1.55 5.26 -104.47 -0.55 -2.09 16 6 C 0.17 2.33 5.46 -5.19 -0.03 2.30 16 7 N -0.73 -11.08 5.55 -61.47 -0.34 -11.43 16 8 C 0.51 10.05 7.83 -10.99 -0.09 9.96 16 9 O -0.54 -12.75 15.98 5.56 0.09 -12.66 16 10 C -0.12 -2.53 5.64 -27.88 -0.16 -2.69 16 11 C 0.00 0.06 3.33 -27.89 -0.09 -0.04 16 12 C -0.52 -15.47 9.66 -34.44 -0.33 -15.80 16 13 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.91 -28.73 13.96 55.43 0.77 -27.95 16 16 Si 0.88 23.23 27.47 -169.99 -4.67 18.56 16 17 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.26 -6.88 6.54 56.52 0.37 -6.51 16 20 C 0.15 1.56 6.63 -39.22 -0.26 1.30 16 21 O -0.29 -3.27 9.01 -19.44 -0.18 -3.45 16 22 C 0.05 0.41 2.94 -25.17 -0.07 0.34 16 23 H 0.09 0.54 6.28 -51.92 -0.33 0.22 16 24 C -0.15 -1.17 6.90 -25.17 -0.17 -1.34 16 25 C 0.04 0.36 7.63 37.93 0.29 0.65 16 26 O -0.36 -4.20 11.65 -35.23 -0.41 -4.61 16 27 C 0.03 0.22 6.96 37.93 0.26 0.48 16 28 C -0.22 -1.81 8.52 -39.44 -0.34 -2.15 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.13 1.07 8.04 -52.49 -0.42 0.65 16 34 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 35 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 36 H 0.40 5.23 8.46 -40.82 -0.35 4.88 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 40 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.10 0.91 8.00 -51.92 -0.42 0.49 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 48 H 0.13 0.82 5.86 -52.48 -0.31 0.51 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -36.84 394.64 -9.07 -45.91 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.63 Total: 0.56 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.66 Total: -10.88 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.43 Total: -39.38 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.50 Total: -20.71 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.67 Total: 18.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.84 -9.07 -45.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291893332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.796 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds