Wall clock time and date at job start Tue Mar 31 2020 17:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38284 * 119.97232 * 2 1 4 4 C 1.38248 * 120.11218 * 179.71862 * 3 2 1 5 5 C 1.38168 * 120.05045 * 0.55291 * 4 3 2 6 6 C 1.50707 * 120.02243 * 179.74588 * 5 4 3 7 7 N 1.46496 * 109.47156 * 259.97248 * 6 5 4 8 8 C 1.34773 * 120.00292 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99898 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00259 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47155 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47203 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99729 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00383 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00352 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99750 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47517 * 89.99829 * 16 14 12 18 18 H 1.48505 * 109.47288 * 209.99797 * 16 14 12 19 19 H 1.48504 * 109.47430 * 329.99335 * 16 14 12 20 20 C 1.38709 * 119.94661 * 359.71746 * 5 4 3 21 21 O 1.35904 * 120.05469 * 179.97438 * 20 5 4 22 22 C 1.42894 * 116.99923 * 174.50836 * 21 20 5 23 23 H 1.09011 * 110.45497 * 326.40507 * 22 21 20 24 24 C 1.54507 * 110.51371 * 203.80398 * 22 21 20 25 25 C 1.54472 * 104.06466 * 241.35327 * 24 22 21 26 26 O 1.44432 * 104.80351 * 23.97871 * 25 24 22 27 27 C 1.44425 * 105.26853 * 319.48723 * 26 25 24 28 28 C 1.38125 * 119.97299 * 180.26541 * 2 1 3 29 29 H 1.09001 * 109.47544 * 269.73039 * 1 2 3 30 30 H 1.09000 * 109.46647 * 29.73276 * 1 2 3 31 31 H 1.09004 * 109.47115 * 149.72651 * 1 2 3 32 32 H 1.08001 * 119.94370 * 359.97430 * 3 2 1 33 33 H 1.07998 * 119.97606 * 180.29414 * 4 3 2 34 34 H 1.09000 * 109.47482 * 19.97474 * 6 5 4 35 35 H 1.09001 * 109.46691 * 139.97562 * 6 5 4 36 36 H 0.97001 * 119.99789 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.47265 * 300.00385 * 10 8 7 38 38 H 1.09004 * 109.46620 * 60.00071 * 10 8 7 39 39 H 1.09000 * 109.47175 * 300.00228 * 11 10 8 40 40 H 1.08995 * 109.47105 * 59.99894 * 11 10 8 41 41 H 0.96997 * 119.99928 * 180.02562 * 15 14 12 42 42 H 1.09007 * 110.51058 * 359.97438 * 24 22 21 43 43 H 1.09000 * 110.51778 * 122.70434 * 24 22 21 44 44 H 1.09004 * 110.37228 * 142.80517 * 25 24 22 45 45 H 1.09001 * 110.37553 * 265.03324 * 25 24 22 46 46 H 1.09004 * 110.37163 * 281.67621 * 27 26 25 47 47 H 1.09000 * 110.36856 * 159.34424 * 27 26 25 48 48 H 1.08004 * 120.02653 * 0.02968 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0059 5 6 4.2752 0.0071 0.0002 6 6 5.7822 0.0115 0.0008 7 7 6.2718 -0.2208 -1.3602 8 6 7.5970 -0.2591 -1.6024 9 8 8.3844 -0.1016 -0.6933 10 6 8.1007 -0.4986 -3.0024 11 6 9.6306 -0.4952 -3.0016 12 6 10.1343 -0.7341 -4.4017 13 1 9.4331 -0.8747 -5.2111 14 6 11.4900 -0.7732 -4.6494 15 7 11.9295 -0.9822 -5.8712 16 14 12.7026 -0.5306 -3.2494 17 1 13.0273 -1.8463 -2.6422 18 1 13.9446 0.0931 -3.7726 19 1 12.1000 0.3543 -2.2202 20 6 3.5845 -1.1959 -0.0054 21 8 4.2658 -2.3718 -0.0115 22 6 3.4944 -3.5690 0.1047 23 1 2.6231 -3.4008 0.7379 24 6 4.3597 -4.7181 0.6687 25 6 4.3498 -5.7806 -0.4525 26 8 4.0714 -5.0397 -1.6606 27 6 3.0639 -4.0733 -1.2905 28 6 2.1971 -1.1965 -0.0055 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3632 0.8924 -0.5097 31 1 -0.3633 -0.8876 -0.5181 32 1 1.6565 2.1324 -0.0004 33 1 4.1176 2.1381 0.0107 34 1 6.1426 0.9767 0.3568 35 1 6.1475 -0.7777 0.6580 36 1 5.6421 -0.3470 -2.0872 37 1 7.7400 -1.4637 -3.3581 38 1 7.7355 0.2905 -3.6598 39 1 9.9917 0.4697 -2.6457 40 1 9.9953 -1.2845 -2.3442 41 1 12.8833 -1.0100 -6.0454 42 1 5.3762 -4.3730 0.8585 43 1 3.9152 -5.1196 1.5794 44 1 5.3223 -6.2680 -0.5219 45 1 3.5686 -6.5184 -0.2692 46 1 2.0842 -4.5481 -1.2369 47 1 3.0486 -3.2492 -2.0037 48 1 1.6570 -2.1318 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291893332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:36 Heat of formation + Delta-G solvation = -130.905991 kcal Electronic energy + Delta-G solvation = -28557.097495 eV Core-core repulsion = 24575.819073 eV Total energy + Delta-G solvation = -3981.278422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76719 -40.68077 -40.00499 -38.17913 -36.28825 -35.52361 -33.74412 -33.18122 -32.57573 -30.86392 -29.97218 -29.59569 -27.82612 -25.45444 -24.54682 -23.63282 -23.07868 -22.05252 -21.74088 -21.20149 -19.27578 -18.87726 -17.85907 -17.64111 -17.29933 -17.12315 -16.93253 -16.49107 -16.25244 -16.07656 -15.93523 -15.61388 -15.16183 -14.84136 -14.73700 -14.54963 -14.39607 -14.34174 -13.78353 -13.73072 -13.60308 -13.40080 -13.11817 -12.95128 -12.84705 -12.75957 -12.55015 -12.29186 -12.19679 -12.09559 -11.97812 -11.80454 -11.77584 -11.57474 -11.41490 -10.86453 -10.78937 -10.78512 -10.08400 -9.75127 -9.12865 -8.32182 -6.35232 0.20162 0.43721 1.32815 1.33840 1.50070 1.68650 2.11623 2.27541 2.34743 2.81128 2.92734 3.03129 3.37609 3.60390 3.70429 3.78298 3.91892 3.94552 4.03918 4.09114 4.17584 4.23834 4.25316 4.38063 4.45510 4.46283 4.55311 4.61347 4.62692 4.73210 4.74375 4.79618 4.82147 4.86248 4.91678 4.98285 4.99630 5.24300 5.30103 5.31745 5.43054 5.44027 5.49139 5.60057 5.62482 5.71909 5.87079 6.22911 6.42446 6.57492 6.70486 7.28861 7.29978 8.83683 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.002909 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.995568 B = 9624.461054 C =11132.942837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 C -0.163 4.163 4 C -0.061 4.061 5 C -0.161 4.161 6 C 0.177 3.823 7 N -0.711 5.711 8 C 0.515 3.485 9 O -0.587 6.587 10 C -0.116 4.116 11 C 0.007 3.993 12 C -0.530 4.530 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.943 5.943 16 Si 0.940 3.060 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.261 1.261 20 C 0.137 3.863 21 O -0.316 6.316 22 C 0.046 3.954 23 H 0.117 0.883 24 C -0.151 4.151 25 C 0.040 3.960 26 O -0.402 6.402 27 C 0.023 3.977 28 C -0.216 4.216 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.410 0.590 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.012 0.988 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.829 -3.124 17.402 36.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.039 4.039 3 C -0.181 4.181 4 C -0.079 4.079 5 C -0.162 4.162 6 C 0.054 3.946 7 N -0.363 5.363 8 C 0.304 3.696 9 O -0.467 6.467 10 C -0.156 4.156 11 C -0.031 4.031 12 C -0.568 4.568 13 H 0.067 0.933 14 C -0.184 4.184 15 N -0.584 5.584 16 Si 0.764 3.236 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.186 1.186 20 C 0.091 3.909 21 O -0.230 6.230 22 C -0.010 4.010 23 H 0.134 0.866 24 C -0.189 4.189 25 C -0.037 4.037 26 O -0.321 6.321 27 C -0.053 4.053 28 C -0.234 4.234 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.245 0.755 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.120 0.880 47 H 0.106 0.894 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -30.815 -3.111 17.730 35.687 hybrid contribution 0.729 -0.086 0.021 0.734 sum -30.086 -3.197 17.750 35.078 Atomic orbital electron populations 1.20908 0.88772 1.04074 1.03526 1.20127 0.97603 0.92021 0.94197 1.21241 0.93482 0.98863 1.04495 1.21126 0.94806 0.96598 0.95410 1.19158 0.93890 0.91892 1.11253 1.19846 0.89950 1.01066 0.83768 1.45967 1.06192 1.73196 1.10902 1.21160 0.82262 0.74756 0.91462 1.90621 1.56736 1.51467 1.47884 1.21483 0.97508 1.04277 0.92313 1.19199 0.92646 0.96370 0.94837 1.21419 0.92613 1.48778 0.93992 0.93343 1.25811 1.00455 0.94285 0.97859 1.70024 1.15159 1.51558 1.21654 0.85810 0.78461 0.79400 0.79935 1.19397 1.20059 1.18573 1.19012 0.91207 0.85294 0.95365 1.86278 1.36706 1.12664 1.87342 1.24131 0.95698 0.83448 0.97764 0.86581 1.23132 1.01548 0.93788 1.00388 1.23643 1.02976 0.94301 0.82741 1.89197 1.59490 1.50418 1.33027 1.24120 0.92860 0.92756 0.95602 1.21302 0.91744 1.00224 1.10122 0.89724 0.90218 0.90462 0.83571 0.84191 0.91251 0.92833 0.75477 0.88664 0.87980 0.96961 0.97479 0.92316 0.91079 0.86043 0.88986 0.89166 0.87999 0.89426 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 71.24 0.71 -0.03 16 2 C -0.04 -0.49 5.88 -19.88 -0.12 -0.60 16 3 C -0.16 -2.20 9.70 22.28 0.22 -1.99 16 4 C -0.06 -1.05 9.67 22.26 0.22 -0.83 16 5 C -0.16 -3.45 5.26 -19.77 -0.10 -3.56 16 6 C 0.18 4.86 5.46 85.64 0.47 5.32 16 7 N -0.71 -21.53 5.55 -466.79 -2.59 -24.12 16 8 C 0.52 20.42 7.83 87.66 0.69 21.10 16 9 O -0.59 -28.00 15.98 -3.04 -0.05 -28.04 16 10 C -0.12 -4.84 5.64 29.85 0.17 -4.68 16 11 C 0.01 0.39 3.33 29.85 0.10 0.49 16 12 C -0.53 -31.99 9.66 25.60 0.25 -31.74 16 13 H 0.05 3.08 7.99 -2.91 -0.02 3.05 16 14 C 0.01 0.83 5.47 84.65 0.46 1.29 16 15 N -0.94 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.94 48.35 27.47 68.60 1.88 50.23 16 17 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.26 -13.40 6.54 99.48 0.65 -12.75 16 20 C 0.14 2.74 6.63 22.50 0.15 2.89 16 21 O -0.32 -7.07 9.01 -92.47 -0.83 -7.90 16 22 C 0.05 0.69 2.94 31.61 0.09 0.78 16 23 H 0.12 1.06 6.28 -2.38 -0.01 1.05 16 24 C -0.15 -2.16 6.90 31.61 0.22 -1.94 16 25 C 0.04 0.61 7.63 72.48 0.55 1.17 16 26 O -0.40 -9.22 11.65 -148.98 -1.74 -10.95 16 27 C 0.02 0.37 6.96 72.48 0.50 0.87 16 28 C -0.22 -3.09 8.52 22.36 0.19 -2.90 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 31 H 0.08 0.37 8.08 -2.38 -0.02 0.35 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.14 2.08 8.04 -2.91 -0.02 2.06 16 34 H 0.07 1.91 8.00 -2.39 -0.02 1.89 16 35 H 0.05 1.68 7.86 -2.39 -0.02 1.67 16 36 H 0.41 10.56 8.46 -92.71 -0.78 9.78 16 37 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 40 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 41 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 42 H 0.07 1.38 8.00 -2.38 -0.02 1.36 16 43 H 0.12 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 48 H 0.15 1.40 5.86 -2.91 -0.02 1.38 16 Total: -1.00 -81.36 394.64 1.86 -79.50 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.12 Total: 15.99 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.76 Total: -14.34 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.29 Total: -84.49 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -2.62 Total: -46.90 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.88 Total: 50.23 kcal Total: -81.36 1.86 -79.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291893332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.404 kcal (2) G-P(sol) polarization free energy of solvation -81.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds