Wall clock time and date at job start Tue Mar 31 2020 17:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.05577 * 2 1 4 4 C 1.54260 * 110.03376 * 238.58184 * 2 1 3 5 5 C 1.54891 * 104.19804 * 217.10575 * 4 2 1 6 6 C 1.54894 * 102.74637 * 37.94057 * 5 4 2 7 7 C 1.53883 * 110.03234 * 121.41071 * 2 1 3 8 8 O 1.42894 * 110.07575 * 238.59087 * 7 2 1 9 9 C 1.52996 * 110.03307 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47083 * 178.61640 * 9 7 2 11 11 C 1.34781 * 119.99952 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99732 * 0.02562 * 11 10 9 13 13 C 1.47535 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.39667 * 120.19540 * 0.27667 * 13 11 10 15 15 C 1.37832 * 119.91342 * 180.27915 * 14 13 11 16 16 C 1.38571 * 120.32487 * 359.71868 * 15 14 13 17 17 C 1.38027 * 120.40189 * 0.02562 * 16 15 14 18 18 C 1.38833 * 120.07329 * 359.97438 * 17 16 15 19 19 O 1.35512 * 120.16176 * 180.02562 * 18 17 16 20 20 C 1.34815 * 116.99860 * 5.60049 * 19 18 17 21 21 H 1.08002 * 120.00415 * 354.93000 * 20 19 18 22 22 C 1.38706 * 119.99930 * 174.66335 * 20 19 18 23 23 N 1.31519 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99872 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47380 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46888 * 119.99883 * 24 22 20 27 27 H 1.48503 * 109.46930 * 239.99488 * 24 22 20 28 28 H 1.09004 * 109.47172 * 298.58415 * 1 2 3 29 29 H 1.08993 * 109.46994 * 58.58683 * 1 2 3 30 30 H 1.08997 * 109.46753 * 178.58881 * 1 2 3 31 31 H 1.09001 * 109.47406 * 181.41820 * 3 2 1 32 32 H 1.09006 * 109.46812 * 301.41443 * 3 2 1 33 33 H 1.08998 * 109.47362 * 61.41423 * 3 2 1 34 34 H 1.08999 * 110.48615 * 98.42501 * 4 2 1 35 35 H 1.09001 * 110.48872 * 335.77975 * 4 2 1 36 36 H 1.08998 * 110.75346 * 279.62773 * 5 4 2 37 37 H 1.08993 * 110.91970 * 156.32909 * 5 4 2 38 38 H 1.09005 * 110.48205 * 203.38442 * 6 5 4 39 39 H 1.08997 * 110.60074 * 80.79570 * 6 5 4 40 40 H 0.96695 * 113.99931 * 180.71586 * 8 7 2 41 41 H 1.09003 * 109.47409 * 58.61784 * 9 7 2 42 42 H 1.09003 * 109.47329 * 298.61897 * 9 7 2 43 43 H 0.96997 * 120.00380 * 0.02562 * 10 9 7 44 44 H 1.08001 * 120.04583 * 0.02562 * 14 13 11 45 45 H 1.07999 * 119.83426 * 179.70181 * 15 14 13 46 46 H 1.08001 * 119.79821 * 180.02562 * 16 15 14 47 47 H 1.08004 * 119.96110 * 180.02562 * 17 16 15 48 48 H 0.96995 * 119.99799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5007 -0.7190 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2339 8 8 2.8823 0.1088 2.0197 9 6 0.8862 -1.2673 2.0740 10 7 1.4013 -2.0103 3.2267 11 6 0.5457 -2.5581 4.1124 12 8 -0.6537 -2.4359 3.9543 13 6 1.0644 -3.3058 5.2736 14 6 2.4414 -3.4437 5.4622 15 6 2.9196 -4.1484 6.5460 16 6 2.0406 -4.7168 7.4540 17 6 0.6774 -4.5843 7.2833 18 6 0.1776 -3.8780 6.1976 19 8 -1.1605 -3.7463 6.0286 20 6 -1.9513 -4.2243 7.0102 21 1 -1.5166 -4.7591 7.8418 22 6 -3.3228 -4.0244 6.9551 23 7 -3.8516 -3.3681 5.9454 24 14 -4.4187 -4.6872 8.3149 25 1 -3.5849 -5.3832 9.3277 26 1 -5.1440 -3.5625 8.9585 27 1 -5.3984 -5.6432 7.7393 28 1 -0.3634 0.4917 0.9024 29 1 -0.3633 0.5356 -0.8770 30 1 -0.3633 -1.0273 -0.0253 31 1 3.1444 1.4263 -0.0254 32 1 1.6761 1.9622 -0.8771 33 1 1.7174 1.9472 0.9024 34 1 2.3297 -0.0536 -2.0254 35 1 1.3143 -1.4661 -1.5965 36 1 4.1710 -0.8290 -0.6751 37 1 3.5357 -2.3677 -1.3411 38 1 3.7638 -2.1036 1.3311 39 1 2.2778 -2.8431 0.6595 40 1 3.2540 -0.3123 2.8067 41 1 0.2640 -1.9246 1.4666 42 1 0.2909 -0.4232 2.4223 43 1 2.3581 -2.1074 3.3530 44 1 3.1306 -3.0021 4.7576 45 1 3.9845 -4.2583 6.6879 46 1 2.4246 -5.2669 8.3004 47 1 -0.0012 -5.0300 7.9956 48 1 -4.8107 -3.2287 5.9067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294549061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:58 Heat of formation + Delta-G solvation = -92.879401 kcal Electronic energy + Delta-G solvation = -29533.871014 eV Core-core repulsion = 25554.241549 eV Total energy + Delta-G solvation = -3979.629465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.52922 -39.42396 -37.89004 -36.35038 -35.52459 -33.78937 -32.44037 -32.35111 -30.85374 -29.05248 -28.88337 -27.20976 -25.58413 -25.22942 -23.86657 -22.69999 -21.47351 -21.01753 -19.87483 -18.61451 -18.09734 -17.79988 -16.50768 -16.22119 -15.91862 -15.41428 -15.11234 -14.66603 -14.62194 -14.28275 -14.13150 -13.83064 -13.74823 -13.66646 -13.34724 -13.17403 -12.85576 -12.73065 -12.60084 -12.46634 -12.03132 -11.96555 -11.73194 -11.53550 -11.31762 -11.26680 -11.14459 -11.10816 -10.92869 -10.81253 -10.69954 -10.59561 -10.45863 -10.40649 -9.90551 -9.58541 -8.89951 -8.86783 -8.58464 -8.29075 -7.32702 -6.45763 -4.05729 1.69570 2.29767 3.10933 3.11861 3.17611 3.59762 3.73046 3.92403 3.97504 4.27827 4.43670 4.57885 4.62696 4.98484 5.04824 5.10048 5.12371 5.15575 5.20685 5.26845 5.37990 5.43574 5.50393 5.60096 5.64303 5.68674 5.71137 5.73725 5.81324 5.84185 5.89746 5.94710 6.01716 6.07050 6.08881 6.10016 6.17983 6.30142 6.39290 6.53853 6.66620 6.88085 6.90616 7.03984 7.21927 7.27751 7.54133 7.67364 7.90201 8.06394 8.93913 9.07498 9.66189 10.68071 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003206 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.002035 B = 8731.145068 C =10187.746255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.051 4.051 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.120 4.120 6 C -0.151 4.151 7 C 0.128 3.872 8 O -0.548 6.548 9 C 0.101 3.899 10 N -0.745 5.745 11 C 0.555 3.445 12 O -0.499 6.499 13 C -0.228 4.228 14 C -0.039 4.039 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.124 6.124 20 C -0.404 4.404 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.371 0.629 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.386 0.614 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.132 0.868 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.349 3.920 -9.941 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.051 4.051 3 C -0.179 4.179 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.353 6.353 9 C -0.023 4.023 10 N -0.402 5.402 11 C 0.344 3.656 12 O -0.372 6.372 13 C -0.232 4.232 14 C -0.058 4.058 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.130 3.870 19 O -0.022 6.022 20 C -0.480 4.480 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.221 0.779 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.149 0.851 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.823 4.629 -10.805 17.396 hybrid contribution 0.178 -0.916 1.328 1.623 sum 13.001 3.712 -9.477 16.511 Atomic orbital electron populations 1.22101 0.93659 1.02610 1.02441 1.21095 0.95619 0.96208 0.92188 1.21553 1.01163 0.93989 1.01193 1.22524 0.97352 0.98880 0.96630 1.22409 0.97829 0.99792 0.95675 1.23095 0.99981 0.98380 0.97452 1.22089 0.89243 0.89226 0.90768 1.86595 1.67427 1.40945 1.40369 1.22141 0.96114 0.96527 0.87478 1.45888 1.09283 1.58204 1.26824 1.18220 0.86216 0.79001 0.82136 1.90953 1.14310 1.57729 1.74248 1.18844 0.92500 1.11830 1.00068 1.20723 0.92723 0.95975 0.96332 1.20455 0.98515 1.07385 0.98622 1.20897 0.92892 0.96007 0.97146 1.21168 0.95758 1.07258 1.01500 1.19272 0.85328 0.90953 0.91487 1.84171 1.10317 1.66384 1.41305 1.21553 0.88275 1.36008 1.02135 0.88810 1.25393 0.96414 0.96390 0.98120 1.70137 1.12542 1.35176 1.28453 0.85661 0.79648 0.78657 0.79524 1.18963 1.19993 1.20003 0.91669 0.92289 0.91795 0.92304 0.93366 0.92137 0.91244 0.91183 0.91330 0.91538 0.91083 0.90305 0.78162 0.90712 0.90829 0.77943 0.87258 0.87281 0.87180 0.85067 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.21 37.16 0.27 -1.39 16 2 C -0.05 -0.52 0.94 -153.39 -0.14 -0.67 16 3 C -0.12 -1.24 7.40 37.16 0.27 -0.97 16 4 C -0.12 -1.03 5.90 -25.07 -0.15 -1.18 16 5 C -0.12 -1.02 6.91 -24.73 -0.17 -1.19 16 6 C -0.15 -1.46 5.48 -25.07 -0.14 -1.59 16 7 C 0.13 1.41 1.01 -89.50 -0.09 1.32 16 8 O -0.55 -6.04 11.13 -35.23 -0.39 -6.44 16 9 C 0.10 1.47 3.48 -4.04 -0.01 1.45 16 10 N -0.75 -11.58 5.06 -61.35 -0.31 -11.89 16 11 C 0.55 12.03 7.76 -12.47 -0.10 11.94 16 12 O -0.50 -13.61 15.17 -16.57 -0.25 -13.86 16 13 C -0.23 -4.87 5.89 -104.81 -0.62 -5.49 16 14 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 15 C -0.23 -3.70 10.02 -39.61 -0.40 -4.10 16 16 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 17 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 18 C 0.19 4.68 6.66 -38.60 -0.26 4.42 16 19 O -0.12 -3.65 7.84 -21.03 -0.16 -3.81 16 20 C -0.40 -11.42 9.49 30.91 0.29 -11.13 16 21 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 22 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 23 N -0.83 -25.07 13.67 55.48 0.76 -24.31 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H 0.06 0.80 6.78 -51.93 -0.35 0.44 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.73 6.68 -51.93 -0.35 0.38 16 31 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 34 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 35 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 39 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 40 H 0.37 3.25 7.89 45.56 0.36 3.60 16 41 H 0.07 1.16 6.65 -51.93 -0.35 0.82 16 42 H 0.07 1.21 6.82 -51.93 -0.35 0.86 16 43 H 0.39 4.66 5.25 -40.82 -0.21 4.44 16 44 H 0.11 1.36 6.40 -52.49 -0.34 1.02 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -34.64 377.73 -8.44 -43.08 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.29 Total: 11.22 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.46 Total: -15.16 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.45 Total: -36.20 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.81 Total: -24.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.64 -8.44 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294549061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.801 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds