Wall clock time and date at job start Tue Mar 31 2020 17:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.05577 * 2 1 4 4 C 1.54260 * 110.03376 * 238.58184 * 2 1 3 5 5 C 1.54891 * 104.19804 * 217.10575 * 4 2 1 6 6 C 1.54894 * 102.74637 * 37.94057 * 5 4 2 7 7 C 1.53883 * 110.03234 * 121.41071 * 2 1 3 8 8 O 1.42894 * 110.07575 * 238.59087 * 7 2 1 9 9 C 1.52996 * 110.03307 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47083 * 178.61640 * 9 7 2 11 11 C 1.34781 * 119.99952 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99732 * 0.02562 * 11 10 9 13 13 C 1.47535 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.39667 * 120.19540 * 0.27667 * 13 11 10 15 15 C 1.37832 * 119.91342 * 180.27915 * 14 13 11 16 16 C 1.38571 * 120.32487 * 359.71868 * 15 14 13 17 17 C 1.38027 * 120.40189 * 0.02562 * 16 15 14 18 18 C 1.38833 * 120.07329 * 359.97438 * 17 16 15 19 19 O 1.35512 * 120.16176 * 180.02562 * 18 17 16 20 20 C 1.34815 * 116.99860 * 5.60049 * 19 18 17 21 21 H 1.08002 * 120.00415 * 354.93000 * 20 19 18 22 22 C 1.38706 * 119.99930 * 174.66335 * 20 19 18 23 23 N 1.31519 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99872 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47380 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46888 * 119.99883 * 24 22 20 27 27 H 1.48503 * 109.46930 * 239.99488 * 24 22 20 28 28 H 1.09004 * 109.47172 * 298.58415 * 1 2 3 29 29 H 1.08993 * 109.46994 * 58.58683 * 1 2 3 30 30 H 1.08997 * 109.46753 * 178.58881 * 1 2 3 31 31 H 1.09001 * 109.47406 * 181.41820 * 3 2 1 32 32 H 1.09006 * 109.46812 * 301.41443 * 3 2 1 33 33 H 1.08998 * 109.47362 * 61.41423 * 3 2 1 34 34 H 1.08999 * 110.48615 * 98.42501 * 4 2 1 35 35 H 1.09001 * 110.48872 * 335.77975 * 4 2 1 36 36 H 1.08998 * 110.75346 * 279.62773 * 5 4 2 37 37 H 1.08993 * 110.91970 * 156.32909 * 5 4 2 38 38 H 1.09005 * 110.48205 * 203.38442 * 6 5 4 39 39 H 1.08997 * 110.60074 * 80.79570 * 6 5 4 40 40 H 0.96695 * 113.99931 * 180.71586 * 8 7 2 41 41 H 1.09003 * 109.47409 * 58.61784 * 9 7 2 42 42 H 1.09003 * 109.47329 * 298.61897 * 9 7 2 43 43 H 0.96997 * 120.00380 * 0.02562 * 10 9 7 44 44 H 1.08001 * 120.04583 * 0.02562 * 14 13 11 45 45 H 1.07999 * 119.83426 * 179.70181 * 15 14 13 46 46 H 1.08001 * 119.79821 * 180.02562 * 16 15 14 47 47 H 1.08004 * 119.96110 * 180.02562 * 17 16 15 48 48 H 0.96995 * 119.99799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5007 -0.7190 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2339 8 8 2.8823 0.1088 2.0197 9 6 0.8862 -1.2673 2.0740 10 7 1.4013 -2.0103 3.2267 11 6 0.5457 -2.5581 4.1124 12 8 -0.6537 -2.4359 3.9543 13 6 1.0644 -3.3058 5.2736 14 6 2.4414 -3.4437 5.4622 15 6 2.9196 -4.1484 6.5460 16 6 2.0406 -4.7168 7.4540 17 6 0.6774 -4.5843 7.2833 18 6 0.1776 -3.8780 6.1976 19 8 -1.1605 -3.7463 6.0286 20 6 -1.9513 -4.2243 7.0102 21 1 -1.5166 -4.7591 7.8418 22 6 -3.3228 -4.0244 6.9551 23 7 -3.8516 -3.3681 5.9454 24 14 -4.4187 -4.6872 8.3149 25 1 -3.5849 -5.3832 9.3277 26 1 -5.1440 -3.5625 8.9585 27 1 -5.3984 -5.6432 7.7393 28 1 -0.3634 0.4917 0.9024 29 1 -0.3633 0.5356 -0.8770 30 1 -0.3633 -1.0273 -0.0253 31 1 3.1444 1.4263 -0.0254 32 1 1.6761 1.9622 -0.8771 33 1 1.7174 1.9472 0.9024 34 1 2.3297 -0.0536 -2.0254 35 1 1.3143 -1.4661 -1.5965 36 1 4.1710 -0.8290 -0.6751 37 1 3.5357 -2.3677 -1.3411 38 1 3.7638 -2.1036 1.3311 39 1 2.2778 -2.8431 0.6595 40 1 3.2540 -0.3123 2.8067 41 1 0.2640 -1.9246 1.4666 42 1 0.2909 -0.4232 2.4223 43 1 2.3581 -2.1074 3.3530 44 1 3.1306 -3.0021 4.7576 45 1 3.9845 -4.2583 6.6879 46 1 2.4246 -5.2669 8.3004 47 1 -0.0012 -5.0300 7.9956 48 1 -4.8107 -3.2287 5.9067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294549061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:57 Heat of formation + Delta-G solvation = -117.664758 kcal Electronic energy + Delta-G solvation = -29534.945788 eV Core-core repulsion = 25554.241549 eV Total energy + Delta-G solvation = -3980.704239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65662 -40.94948 -39.57869 -38.03012 -36.48725 -35.25940 -34.32997 -33.23104 -32.35589 -30.58284 -30.13971 -28.06104 -27.41403 -26.39274 -24.99383 -24.06071 -23.01187 -22.06132 -21.32993 -19.87370 -19.70659 -19.20211 -18.05267 -17.50043 -16.91373 -16.61858 -16.45511 -16.22321 -16.10452 -15.84300 -15.58069 -15.37264 -15.30205 -14.70453 -14.44090 -14.36727 -14.24873 -14.11869 -13.76180 -13.55740 -13.53994 -13.05220 -12.94570 -12.90913 -12.69770 -12.56410 -12.47416 -12.34028 -12.10556 -12.06199 -11.83935 -11.47412 -11.44961 -11.38170 -11.32863 -10.85624 -10.85328 -10.61902 -10.15216 -9.79548 -9.04166 -8.45729 -6.16789 0.11469 0.72451 1.31482 1.42138 1.51369 2.07981 2.14565 2.18676 2.86854 3.12339 3.22198 3.42105 3.46086 3.58668 3.62773 3.96321 4.07279 4.16211 4.26179 4.28793 4.30770 4.36387 4.39187 4.48944 4.51899 4.60158 4.69071 4.78856 4.83971 4.89180 4.97072 4.98147 5.03633 5.06436 5.07156 5.11593 5.13635 5.17102 5.27999 5.38283 5.40806 5.47379 5.49914 5.57175 5.60446 5.69538 5.95124 6.16715 6.61676 6.76368 6.93756 7.45088 7.79681 8.75027 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003206 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.002035 B = 8731.145068 C =10187.746255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.054 4.054 3 C -0.116 4.116 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.150 4.150 7 C 0.138 3.862 8 O -0.552 6.552 9 C 0.104 3.896 10 N -0.715 5.715 11 C 0.548 3.452 12 O -0.568 6.568 13 C -0.245 4.245 14 C -0.029 4.029 15 C -0.199 4.199 16 C -0.040 4.040 17 C -0.259 4.259 18 C 0.149 3.851 19 O -0.190 6.190 20 C -0.427 4.427 21 H 0.107 0.893 22 C -0.022 4.022 23 N -0.905 5.905 24 Si 1.022 2.978 25 H -0.245 1.245 26 H -0.269 1.269 27 H -0.268 1.268 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.382 0.618 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.408 0.592 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.154 0.846 47 H 0.122 0.878 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.610 3.157 -9.650 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.055 4.055 3 C -0.173 4.173 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.188 4.188 7 C 0.096 3.904 8 O -0.359 6.359 9 C -0.020 4.020 10 N -0.371 5.371 11 C 0.338 3.662 12 O -0.447 6.447 13 C -0.250 4.250 14 C -0.047 4.047 15 C -0.218 4.218 16 C -0.058 4.058 17 C -0.278 4.278 18 C 0.094 3.906 19 O -0.092 6.092 20 C -0.503 4.503 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.541 5.541 24 Si 0.841 3.159 25 H -0.168 1.168 26 H -0.194 1.194 27 H -0.193 1.193 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.246 0.754 44 H 0.179 0.821 45 H 0.183 0.817 46 H 0.171 0.829 47 H 0.140 0.860 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.233 3.858 -10.512 21.397 hybrid contribution -0.961 -0.650 1.195 1.665 sum 17.273 3.209 -9.316 19.886 Atomic orbital electron populations 1.22089 0.94834 1.01827 1.02086 1.21166 0.94720 0.96781 0.92808 1.21503 1.01355 0.93549 1.00929 1.22527 0.97594 0.99043 0.96025 1.22405 0.97609 1.00348 0.94754 1.23095 1.00094 0.96840 0.98773 1.22018 0.88016 0.90110 0.90215 1.86602 1.67049 1.41267 1.40980 1.22198 0.97679 0.95041 0.87074 1.45549 1.09700 1.56246 1.25594 1.18560 0.85812 0.78828 0.82957 1.90937 1.17492 1.60384 1.75920 1.19289 0.94522 1.11772 0.99434 1.21299 0.90820 0.95047 0.97535 1.21188 1.01061 1.03331 0.96177 1.21443 0.90991 0.94927 0.98449 1.21305 0.97941 1.07757 1.00775 1.20096 0.84748 0.92150 0.93628 1.84177 1.12452 1.69781 1.42834 1.22081 0.89076 1.36437 1.02721 0.87571 1.26762 0.97863 0.96597 1.00924 1.70330 1.12716 1.39192 1.31887 0.84505 0.77241 0.78071 0.76132 1.16801 1.19432 1.19340 0.93887 0.90685 0.92930 0.91790 0.92013 0.93992 0.89752 0.91324 0.90504 0.90213 0.89035 0.91391 0.76919 0.92279 0.93604 0.75375 0.82071 0.81671 0.82884 0.86024 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 7.21 71.98 0.52 -2.97 16 2 C -0.05 -1.07 0.94 -51.46 -0.05 -1.12 16 3 C -0.12 -2.20 7.40 71.98 0.53 -1.67 16 4 C -0.11 -1.77 5.90 31.67 0.19 -1.59 16 5 C -0.11 -1.56 6.91 31.89 0.22 -1.34 16 6 C -0.15 -2.48 5.48 31.67 0.17 -2.30 16 7 C 0.14 2.89 1.01 -10.07 -0.01 2.88 16 8 O -0.55 -10.98 11.13 -148.98 -1.66 -12.64 16 9 C 0.10 3.14 3.48 86.38 0.30 3.44 16 10 N -0.71 -22.08 5.06 -466.27 -2.36 -24.44 16 11 C 0.55 24.83 7.76 86.69 0.67 25.50 16 12 O -0.57 -33.92 15.17 16.89 0.26 -33.66 16 13 C -0.25 -10.53 5.89 -19.99 -0.12 -10.64 16 14 C -0.03 -0.82 9.54 22.52 0.21 -0.61 16 15 C -0.20 -5.09 10.02 22.25 0.22 -4.87 16 16 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 17 C -0.26 -11.00 9.16 22.36 0.20 -10.80 16 18 C 0.15 7.67 6.66 22.91 0.15 7.82 16 19 O -0.19 -12.16 7.84 0.92 0.01 -12.16 16 20 C -0.43 -26.02 9.49 67.93 0.64 -25.38 16 21 H 0.11 5.80 5.21 -2.91 -0.02 5.79 16 22 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 23 N -0.91 -59.69 13.67 21.62 0.30 -59.39 16 24 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 25 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H 0.04 1.16 6.78 -2.38 -0.02 1.14 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.31 6.68 -2.39 -0.02 1.29 16 31 H 0.06 1.15 7.87 -2.39 -0.02 1.13 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.04 0.94 7.87 -2.39 -0.02 0.92 16 34 H 0.08 1.08 7.84 -2.39 -0.02 1.06 16 35 H 0.07 1.09 7.84 -2.39 -0.02 1.08 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.14 8.05 -2.38 -0.02 1.12 16 39 H 0.07 1.30 7.85 -2.39 -0.02 1.28 16 40 H 0.38 5.43 7.89 -74.06 -0.58 4.85 16 41 H 0.06 1.99 6.65 -2.39 -0.02 1.97 16 42 H 0.05 1.65 6.82 -2.39 -0.02 1.64 16 43 H 0.41 8.64 5.25 -92.71 -0.49 8.16 16 44 H 0.16 2.91 6.40 -2.91 -0.02 2.89 16 45 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 47 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 48 H 0.27 16.29 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -88.97 377.73 3.05 -85.91 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.07 Total: 35.32 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.56 Total: -25.52 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.07 Total: -83.83 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -1.39 Total: -58.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -88.97 3.05 -85.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294549061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.751 kcal (2) G-P(sol) polarization free energy of solvation -88.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds