Wall clock time and date at job start Tue Mar 31 2020 17:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.01744 * 2 1 4 4 C 1.54266 * 110.03450 * 238.55445 * 2 1 3 5 5 C 1.54883 * 104.19709 * 264.32611 * 4 2 1 6 6 C 1.54893 * 102.75058 * 322.05907 * 5 4 2 7 7 C 1.53881 * 110.02953 * 121.38803 * 2 1 3 8 8 O 1.42897 * 110.03145 * 359.97438 * 7 2 1 9 9 C 1.53002 * 110.03310 * 238.61818 * 7 2 1 10 10 N 1.46493 * 109.47023 * 185.69635 * 9 7 2 11 11 C 1.34778 * 120.00114 * 180.02562 * 10 9 7 12 12 O 1.21596 * 119.99623 * 359.97438 * 11 10 9 13 13 C 1.47527 * 120.00225 * 179.97438 * 11 10 9 14 14 C 1.39668 * 120.20018 * 0.02562 * 13 11 10 15 15 C 1.37822 * 119.92151 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.32522 * 359.97438 * 15 14 13 17 17 C 1.38029 * 120.40159 * 0.02562 * 16 15 14 18 18 C 1.38837 * 120.06816 * 359.74479 * 17 16 15 19 19 O 1.35514 * 120.15868 * 180.27335 * 18 17 16 20 20 C 1.34820 * 117.00073 * 354.40604 * 19 18 17 21 21 H 1.07997 * 120.00277 * 5.05594 * 20 19 18 22 22 C 1.38699 * 119.99931 * 185.06542 * 20 19 18 23 23 N 1.31517 * 120.00203 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99785 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46871 * 120.00122 * 24 22 20 27 27 H 1.48502 * 109.47190 * 239.99690 * 24 22 20 28 28 H 1.08997 * 109.46965 * 298.61331 * 1 2 3 29 29 H 1.08996 * 109.46868 * 58.60689 * 1 2 3 30 30 H 1.08996 * 109.46867 * 178.60746 * 1 2 3 31 31 H 1.09000 * 109.47214 * 181.38885 * 3 2 1 32 32 H 1.08995 * 109.47266 * 301.38907 * 3 2 1 33 33 H 1.08997 * 109.47077 * 61.39433 * 3 2 1 34 34 H 1.08995 * 110.48182 * 23.00713 * 4 2 1 35 35 H 1.08996 * 110.48442 * 145.51446 * 4 2 1 36 36 H 1.09005 * 110.75561 * 80.37424 * 5 4 2 37 37 H 1.09000 * 110.76029 * 203.74126 * 5 4 2 38 38 H 1.08997 * 110.48056 * 279.26062 * 6 5 4 39 39 H 1.09002 * 110.48742 * 156.62189 * 6 5 4 40 40 H 0.96705 * 113.99511 * 179.97438 * 8 7 2 41 41 H 1.09000 * 109.47012 * 305.69275 * 9 7 2 42 42 H 1.09000 * 109.46934 * 65.68968 * 9 7 2 43 43 H 0.97002 * 120.00179 * 359.97438 * 10 9 7 44 44 H 1.08007 * 120.03475 * 359.97438 * 14 13 11 45 45 H 1.08005 * 119.83660 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.79648 * 180.02562 * 16 15 14 47 47 H 1.07994 * 119.96395 * 179.97438 * 17 16 15 48 48 H 0.96998 * 120.00149 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3281 -2.1905 -0.7180 6 6 2.8874 -1.9403 0.7045 7 6 2.0571 -0.7530 1.2342 8 8 0.9634 -1.2315 2.0196 9 6 2.9398 0.1717 2.0748 10 7 3.5434 -0.5920 3.1696 11 6 4.3649 0.0201 4.0454 12 8 4.6055 1.2061 3.9264 13 6 4.9724 -0.7488 5.1483 14 6 4.6994 -2.1113 5.2885 15 6 5.2704 -2.8242 6.3206 16 6 6.1156 -2.1959 7.2212 17 6 6.3946 -0.8500 7.0953 18 6 5.8321 -0.1170 6.0589 19 8 6.1092 1.2032 5.9302 20 6 6.8447 1.7723 6.9064 21 1 7.2536 1.1634 7.6991 22 6 7.0762 3.1397 6.8926 23 7 6.5787 3.8812 5.9270 24 14 8.0948 3.9282 8.2455 25 1 8.5350 2.8847 9.2057 26 1 9.2848 4.5867 7.6492 27 1 7.2737 4.9404 8.9572 28 1 -0.3633 0.4921 0.9021 29 1 -0.3633 0.5353 -0.8772 30 1 -0.3633 -1.0273 -0.0250 31 1 3.1434 1.4273 -0.0249 32 1 1.6752 1.9622 -0.8772 33 1 1.7158 1.9474 0.9022 34 1 1.3062 -0.7705 -2.0250 35 1 2.9799 -0.2994 -1.5978 36 1 1.4031 -2.7655 -0.6739 37 1 3.0676 -2.6938 -1.3409 38 1 3.9440 -1.6764 0.6580 39 1 2.7401 -2.8191 1.3324 40 1 1.2310 -1.7158 2.8127 41 1 3.7264 0.5917 1.4480 42 1 2.3330 0.9785 2.4858 43 1 3.3513 -1.5380 3.2647 44 1 4.0416 -2.6057 4.5889 45 1 5.0580 -3.8777 6.4280 46 1 6.5587 -2.7629 8.0266 47 1 7.0539 -0.3674 7.8014 48 1 6.7409 4.8375 5.9172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294549070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:02 Heat of formation + Delta-G solvation = -92.924572 kcal Electronic energy + Delta-G solvation = -29538.978243 eV Core-core repulsion = 25559.346819 eV Total energy + Delta-G solvation = -3979.631424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.52948 -39.42284 -37.88743 -36.35031 -35.50717 -33.80998 -32.44408 -32.35119 -30.85021 -29.03956 -28.87413 -27.21143 -25.58934 -25.23577 -23.86465 -22.71438 -21.48033 -21.01042 -19.84427 -18.61668 -18.09138 -17.78165 -16.49812 -16.22369 -15.92650 -15.44874 -15.11950 -14.65290 -14.61093 -14.28902 -14.13595 -13.82544 -13.74839 -13.66947 -13.34928 -13.16495 -12.85119 -12.72620 -12.59767 -12.46734 -12.03641 -11.94554 -11.73192 -11.55152 -11.32480 -11.25819 -11.14556 -11.10668 -10.92819 -10.81317 -10.69806 -10.59335 -10.45914 -10.40512 -9.90464 -9.58499 -8.89878 -8.86691 -8.58288 -8.29121 -7.32789 -6.45704 -4.05723 1.69512 2.29673 3.10855 3.11957 3.17623 3.60399 3.73057 3.92418 3.98304 4.27768 4.43533 4.58119 4.62653 4.98256 5.04967 5.09905 5.12533 5.15472 5.20435 5.26400 5.38805 5.43689 5.50408 5.59736 5.64338 5.68679 5.71046 5.73765 5.81189 5.84277 5.89920 5.94720 6.02211 6.07368 6.08880 6.10025 6.18283 6.29556 6.39482 6.53831 6.66615 6.88289 6.90894 7.03975 7.21870 7.27738 7.54701 7.67307 7.90250 8.06705 8.93954 9.07611 9.66163 10.68113 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.003210 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.919347 B = 8719.523338 C =10178.969615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.051 4.051 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.152 4.152 7 C 0.128 3.872 8 O -0.548 6.548 9 C 0.100 3.900 10 N -0.746 5.746 11 C 0.555 3.445 12 O -0.499 6.499 13 C -0.228 4.228 14 C -0.039 4.039 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.124 6.124 20 C -0.404 4.404 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.371 0.629 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.387 0.613 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.132 0.868 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -12.156 -10.011 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.051 4.051 3 C -0.208 4.208 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.354 6.354 9 C -0.024 4.024 10 N -0.402 5.402 11 C 0.344 3.656 12 O -0.372 6.372 13 C -0.232 4.232 14 C -0.058 4.058 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.130 3.870 19 O -0.022 6.022 20 C -0.480 4.480 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.219 0.781 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.221 0.779 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.149 0.851 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.721 -10.462 -10.829 17.401 hybrid contribution 0.844 -0.487 1.303 1.627 sum -7.877 -10.950 -9.526 16.513 Atomic orbital electron populations 1.21552 0.93179 1.01977 1.01185 1.21098 0.96906 0.94916 0.92205 1.22105 1.01511 0.94746 1.02444 1.22523 1.01064 0.95197 0.96622 1.22411 1.00790 0.96822 0.95663 1.23088 1.00403 0.97976 0.97467 1.22086 0.85839 0.92619 0.90771 1.86594 1.33150 1.75859 1.39799 1.22156 0.96684 0.94738 0.88777 1.45907 1.51149 1.12556 1.30622 1.18221 0.78546 0.87285 0.81550 1.90955 1.59133 1.14519 1.72641 1.18847 1.08538 0.94150 1.01704 1.20723 0.96679 0.91954 0.96405 1.20455 1.05671 0.99281 0.99564 1.20899 0.95215 0.93911 0.96924 1.21169 1.07347 0.94814 1.02341 1.19272 0.90485 0.85764 0.91526 1.84172 1.59349 1.15976 1.42689 1.21550 1.30134 0.91795 1.04488 0.88812 1.25389 0.97534 0.95245 0.98142 1.70136 1.39796 1.06353 1.30026 0.85661 0.78958 0.79370 0.79508 1.18966 1.20004 1.19995 0.92141 0.93372 0.92305 0.91770 0.92298 0.91692 0.91263 0.91188 0.91308 0.91533 0.90267 0.91059 0.78100 0.90567 0.90884 0.77876 0.87260 0.87281 0.87179 0.85066 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 7.40 37.16 0.27 -0.96 16 2 C -0.05 -0.52 0.94 -153.39 -0.14 -0.67 16 3 C -0.15 -1.66 7.20 37.16 0.27 -1.39 16 4 C -0.12 -1.03 5.90 -25.08 -0.15 -1.18 16 5 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 6 C -0.15 -1.46 5.25 -25.07 -0.13 -1.59 16 7 C 0.13 1.41 1.01 -89.50 -0.09 1.32 16 8 O -0.55 -6.05 11.12 -35.23 -0.39 -6.44 16 9 C 0.10 1.45 3.52 -4.04 -0.01 1.44 16 10 N -0.75 -11.57 5.03 -61.35 -0.31 -11.88 16 11 C 0.55 12.02 7.76 -12.47 -0.10 11.92 16 12 O -0.50 -13.61 15.17 -16.57 -0.25 -13.86 16 13 C -0.23 -4.87 5.89 -104.81 -0.62 -5.49 16 14 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -3.70 10.02 -39.61 -0.40 -4.09 16 16 C -0.05 -0.89 10.03 -39.53 -0.40 -1.28 16 17 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 18 C 0.19 4.67 6.66 -38.60 -0.26 4.42 16 19 O -0.12 -3.65 7.84 -21.05 -0.16 -3.81 16 20 C -0.40 -11.42 9.49 30.90 0.29 -11.13 16 21 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 22 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 23 N -0.83 -25.07 13.67 55.48 0.76 -24.31 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 7.87 -51.93 -0.41 0.20 16 31 H 0.06 0.74 6.58 -51.93 -0.34 0.39 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.79 6.90 -51.93 -0.36 0.43 16 34 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 35 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.83 7.86 -51.93 -0.41 0.43 16 39 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.37 3.27 8.18 45.56 0.37 3.64 16 41 H 0.08 1.18 6.38 -51.93 -0.33 0.85 16 42 H 0.07 1.20 7.09 -51.93 -0.37 0.84 16 43 H 0.39 4.67 5.33 -40.82 -0.22 4.45 16 44 H 0.11 1.36 6.40 -52.48 -0.34 1.03 16 45 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 46 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 47 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -34.60 377.90 -8.43 -43.03 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.28 Total: 11.28 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.46 Total: -15.18 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.45 Total: -36.19 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.81 Total: -24.12 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.60 -8.43 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294549070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.896 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds