Wall clock time and date at job start Tue Mar 31 2020 17:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.01744 * 2 1 4 4 C 1.54266 * 110.03450 * 238.55445 * 2 1 3 5 5 C 1.54883 * 104.19709 * 264.32611 * 4 2 1 6 6 C 1.54893 * 102.75058 * 322.05907 * 5 4 2 7 7 C 1.53881 * 110.02953 * 121.38803 * 2 1 3 8 8 O 1.42897 * 110.03145 * 359.97438 * 7 2 1 9 9 C 1.53002 * 110.03310 * 238.61818 * 7 2 1 10 10 N 1.46493 * 109.47023 * 185.69635 * 9 7 2 11 11 C 1.34778 * 120.00114 * 180.02562 * 10 9 7 12 12 O 1.21596 * 119.99623 * 359.97438 * 11 10 9 13 13 C 1.47527 * 120.00225 * 179.97438 * 11 10 9 14 14 C 1.39668 * 120.20018 * 0.02562 * 13 11 10 15 15 C 1.37822 * 119.92151 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.32522 * 359.97438 * 15 14 13 17 17 C 1.38029 * 120.40159 * 0.02562 * 16 15 14 18 18 C 1.38837 * 120.06816 * 359.74479 * 17 16 15 19 19 O 1.35514 * 120.15868 * 180.27335 * 18 17 16 20 20 C 1.34820 * 117.00073 * 354.40604 * 19 18 17 21 21 H 1.07997 * 120.00277 * 5.05594 * 20 19 18 22 22 C 1.38699 * 119.99931 * 185.06542 * 20 19 18 23 23 N 1.31517 * 120.00203 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99785 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46871 * 120.00122 * 24 22 20 27 27 H 1.48502 * 109.47190 * 239.99690 * 24 22 20 28 28 H 1.08997 * 109.46965 * 298.61331 * 1 2 3 29 29 H 1.08996 * 109.46868 * 58.60689 * 1 2 3 30 30 H 1.08996 * 109.46867 * 178.60746 * 1 2 3 31 31 H 1.09000 * 109.47214 * 181.38885 * 3 2 1 32 32 H 1.08995 * 109.47266 * 301.38907 * 3 2 1 33 33 H 1.08997 * 109.47077 * 61.39433 * 3 2 1 34 34 H 1.08995 * 110.48182 * 23.00713 * 4 2 1 35 35 H 1.08996 * 110.48442 * 145.51446 * 4 2 1 36 36 H 1.09005 * 110.75561 * 80.37424 * 5 4 2 37 37 H 1.09000 * 110.76029 * 203.74126 * 5 4 2 38 38 H 1.08997 * 110.48056 * 279.26062 * 6 5 4 39 39 H 1.09002 * 110.48742 * 156.62189 * 6 5 4 40 40 H 0.96705 * 113.99511 * 179.97438 * 8 7 2 41 41 H 1.09000 * 109.47012 * 305.69275 * 9 7 2 42 42 H 1.09000 * 109.46934 * 65.68968 * 9 7 2 43 43 H 0.97002 * 120.00179 * 359.97438 * 10 9 7 44 44 H 1.08007 * 120.03475 * 359.97438 * 14 13 11 45 45 H 1.08005 * 119.83660 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.79648 * 180.02562 * 16 15 14 47 47 H 1.07994 * 119.96395 * 179.97438 * 17 16 15 48 48 H 0.96998 * 120.00149 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3281 -2.1905 -0.7180 6 6 2.8874 -1.9403 0.7045 7 6 2.0571 -0.7530 1.2342 8 8 0.9634 -1.2315 2.0196 9 6 2.9398 0.1717 2.0748 10 7 3.5434 -0.5920 3.1696 11 6 4.3649 0.0201 4.0454 12 8 4.6055 1.2061 3.9264 13 6 4.9724 -0.7488 5.1483 14 6 4.6994 -2.1113 5.2885 15 6 5.2704 -2.8242 6.3206 16 6 6.1156 -2.1959 7.2212 17 6 6.3946 -0.8500 7.0953 18 6 5.8321 -0.1170 6.0589 19 8 6.1092 1.2032 5.9302 20 6 6.8447 1.7723 6.9064 21 1 7.2536 1.1634 7.6991 22 6 7.0762 3.1397 6.8926 23 7 6.5787 3.8812 5.9270 24 14 8.0948 3.9282 8.2455 25 1 8.5350 2.8847 9.2057 26 1 9.2848 4.5867 7.6492 27 1 7.2737 4.9404 8.9572 28 1 -0.3633 0.4921 0.9021 29 1 -0.3633 0.5353 -0.8772 30 1 -0.3633 -1.0273 -0.0250 31 1 3.1434 1.4273 -0.0249 32 1 1.6752 1.9622 -0.8772 33 1 1.7158 1.9474 0.9022 34 1 1.3062 -0.7705 -2.0250 35 1 2.9799 -0.2994 -1.5978 36 1 1.4031 -2.7655 -0.6739 37 1 3.0676 -2.6938 -1.3409 38 1 3.9440 -1.6764 0.6580 39 1 2.7401 -2.8191 1.3324 40 1 1.2310 -1.7158 2.8127 41 1 3.7264 0.5917 1.4480 42 1 2.3330 0.9785 2.4858 43 1 3.3513 -1.5380 3.2647 44 1 4.0416 -2.6057 4.5889 45 1 5.0580 -3.8777 6.4280 46 1 6.5587 -2.7629 8.0266 47 1 7.0539 -0.3674 7.8014 48 1 6.7409 4.8375 5.9172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294549070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:01 Heat of formation + Delta-G solvation = -117.712123 kcal Electronic energy + Delta-G solvation = -29540.053112 eV Core-core repulsion = 25559.346819 eV Total energy + Delta-G solvation = -3980.706293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65619 -40.94793 -39.57563 -38.02944 -36.46355 -35.28197 -34.32995 -33.23433 -32.35379 -30.58224 -30.11765 -28.06276 -27.41341 -26.40236 -24.99140 -24.07142 -23.01759 -22.07009 -21.28701 -19.87305 -19.70647 -19.18556 -18.04136 -17.49029 -16.92035 -16.66021 -16.45403 -16.21557 -16.09804 -15.84889 -15.59215 -15.35529 -15.30374 -14.69729 -14.45079 -14.36060 -14.23961 -14.12940 -13.73778 -13.55713 -13.53902 -13.05283 -12.95387 -12.89591 -12.69813 -12.56456 -12.48303 -12.34122 -12.10613 -12.05936 -11.83860 -11.47259 -11.44998 -11.37978 -11.32891 -10.85409 -10.84947 -10.61700 -10.14967 -9.79476 -9.04184 -8.45652 -6.16748 0.11493 0.72426 1.31495 1.42143 1.51383 2.08097 2.14608 2.19230 2.86910 3.13020 3.22316 3.42176 3.46079 3.58554 3.63044 3.96513 4.07284 4.15921 4.25952 4.28944 4.29869 4.36302 4.39042 4.50049 4.52237 4.60503 4.69257 4.78725 4.84602 4.88663 4.97155 4.98026 5.03737 5.06481 5.07116 5.11754 5.13744 5.17085 5.28321 5.38112 5.41081 5.47424 5.50122 5.57186 5.60501 5.69530 5.95159 6.16717 6.62504 6.76561 6.93824 7.45310 7.79709 8.75086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.003210 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.919347 B = 8719.523338 C =10178.969615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.151 4.151 7 C 0.138 3.862 8 O -0.553 6.553 9 C 0.103 3.897 10 N -0.715 5.715 11 C 0.548 3.452 12 O -0.569 6.569 13 C -0.245 4.245 14 C -0.029 4.029 15 C -0.199 4.199 16 C -0.040 4.040 17 C -0.258 4.258 18 C 0.149 3.851 19 O -0.190 6.190 20 C -0.427 4.427 21 H 0.107 0.893 22 C -0.022 4.022 23 N -0.905 5.905 24 Si 1.022 2.978 25 H -0.245 1.245 26 H -0.268 1.268 27 H -0.269 1.269 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.382 0.618 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.408 0.592 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.154 0.846 47 H 0.122 0.878 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -17.434 -9.868 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.208 4.208 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.188 4.188 7 C 0.096 3.904 8 O -0.360 6.360 9 C -0.021 4.021 10 N -0.371 5.371 11 C 0.338 3.662 12 O -0.447 6.447 13 C -0.250 4.250 14 C -0.047 4.047 15 C -0.218 4.218 16 C -0.058 4.058 17 C -0.278 4.278 18 C 0.094 3.906 19 O -0.093 6.093 20 C -0.503 4.503 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.541 5.541 24 Si 0.840 3.160 25 H -0.168 1.168 26 H -0.193 1.193 27 H -0.194 1.194 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.231 0.769 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.247 0.753 44 H 0.179 0.821 45 H 0.183 0.817 46 H 0.171 0.829 47 H 0.140 0.860 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.617 -15.884 -10.687 21.425 hybrid contribution 0.927 0.693 1.204 1.670 sum -8.689 -15.192 -9.484 19.906 Atomic orbital electron populations 1.21501 0.92715 1.02191 1.00926 1.21170 0.97230 0.94265 0.92830 1.22093 1.00809 0.95832 1.02095 1.22526 1.01384 0.95290 0.96016 1.22407 1.01448 0.96483 0.94759 1.23090 0.99359 0.97602 0.98781 1.22017 0.85457 0.92676 0.90211 1.86600 1.33027 1.75929 1.40413 1.22210 0.96378 0.95141 0.88341 1.45568 1.48900 1.13404 1.29220 1.18562 0.78755 0.86578 0.82290 1.90938 1.61735 1.17637 1.74437 1.19291 1.08275 0.96351 1.01094 1.21294 0.96431 0.89538 0.97438 1.21187 1.02053 1.01606 0.96905 1.21445 0.94309 0.92104 0.97953 1.21306 1.07925 0.96784 1.01750 1.20097 0.91822 0.85121 0.93584 1.84178 1.62313 1.18441 1.44320 1.22078 1.30521 0.92635 1.05073 0.87570 1.26758 0.98888 0.95586 1.00911 1.70330 1.43739 1.06552 1.33509 0.84504 0.76930 0.78417 0.76102 1.16800 1.19333 1.19449 0.93986 0.92022 0.91807 0.92913 0.90699 0.93895 0.89787 0.91336 0.90495 0.90196 0.91321 0.88948 0.76880 0.92132 0.93693 0.75324 0.82098 0.81674 0.82882 0.86024 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 7.40 71.98 0.53 -1.67 16 2 C -0.05 -1.08 0.94 -51.45 -0.05 -1.13 16 3 C -0.15 -3.49 7.20 71.98 0.52 -2.97 16 4 C -0.11 -1.78 5.90 31.67 0.19 -1.59 16 5 C -0.11 -1.56 6.91 31.88 0.22 -1.34 16 6 C -0.15 -2.46 5.25 31.67 0.17 -2.29 16 7 C 0.14 2.89 1.01 -10.07 -0.01 2.88 16 8 O -0.55 -11.05 11.12 -148.98 -1.66 -12.71 16 9 C 0.10 3.11 3.52 86.38 0.30 3.41 16 10 N -0.71 -22.04 5.03 -466.28 -2.35 -24.38 16 11 C 0.55 24.79 7.76 86.69 0.67 25.47 16 12 O -0.57 -33.91 15.17 16.88 0.26 -33.66 16 13 C -0.25 -10.52 5.89 -19.99 -0.12 -10.63 16 14 C -0.03 -0.82 9.53 22.52 0.21 -0.61 16 15 C -0.20 -5.08 10.02 22.25 0.22 -4.86 16 16 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 17 C -0.26 -10.99 9.16 22.36 0.20 -10.78 16 18 C 0.15 7.66 6.66 22.91 0.15 7.82 16 19 O -0.19 -12.16 7.84 0.85 0.01 -12.16 16 20 C -0.43 -26.01 9.49 67.93 0.64 -25.36 16 21 H 0.11 5.80 5.21 -2.91 -0.02 5.79 16 22 C -0.02 -1.33 5.49 84.85 0.47 -0.87 16 23 N -0.91 -59.69 13.67 21.62 0.30 -59.40 16 24 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 25 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H 0.04 0.94 7.87 -2.39 -0.02 0.92 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.15 7.87 -2.39 -0.02 1.13 16 31 H 0.05 1.31 6.58 -2.39 -0.02 1.30 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.15 6.90 -2.39 -0.02 1.14 16 34 H 0.08 1.08 7.84 -2.39 -0.02 1.06 16 35 H 0.07 1.09 7.84 -2.39 -0.02 1.08 16 36 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.30 7.86 -2.39 -0.02 1.28 16 39 H 0.09 1.13 8.06 -2.39 -0.02 1.11 16 40 H 0.38 5.54 8.18 -74.05 -0.61 4.93 16 41 H 0.06 2.04 6.38 -2.39 -0.02 2.02 16 42 H 0.04 1.62 7.09 -2.39 -0.02 1.60 16 43 H 0.41 8.66 5.33 -92.71 -0.49 8.17 16 44 H 0.16 2.91 6.40 -2.91 -0.02 2.89 16 45 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 46 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 47 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 48 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -88.89 377.90 3.03 -85.86 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.10 Total: 35.40 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 4.55 Total: -25.54 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.05 Total: -83.78 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -1.39 Total: -58.52 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -88.89 3.03 -85.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294549070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.856 kcal (2) G-P(sol) polarization free energy of solvation -88.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds