Wall clock time and date at job start Tue Mar 31 2020 19:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 C 1.53003 * 109.46900 * 240.00035 * 2 1 3 5 5 O 1.42906 * 109.46718 * 60.00221 * 4 2 1 6 6 C 1.52997 * 109.46831 * 120.00243 * 2 1 3 7 7 C 1.52994 * 109.47329 * 299.99611 * 6 2 1 8 8 N 1.46497 * 109.47283 * 179.97438 * 7 6 2 9 9 C 1.34780 * 120.00068 * 179.72438 * 8 7 6 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46612 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47242 * 119.99850 * 22 20 18 25 25 H 1.48501 * 109.46802 * 239.99820 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.08994 * 109.46924 * 300.00158 * 1 2 3 29 29 H 1.09002 * 109.46723 * 59.99757 * 1 2 3 30 30 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46843 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47581 * 299.99709 * 3 2 1 33 33 H 1.08997 * 109.47165 * 60.00599 * 3 2 1 34 34 H 1.08999 * 109.46988 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47045 * 300.00328 * 4 2 1 36 36 H 0.96706 * 113.99362 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.46900 * 179.97438 * 6 2 1 38 38 H 1.09000 * 109.47111 * 60.00092 * 6 2 1 39 39 H 1.08999 * 109.46934 * 60.00261 * 7 6 2 40 40 H 1.09000 * 109.47417 * 300.00294 * 7 6 2 41 41 H 0.97000 * 119.99919 * 0.02562 * 8 7 6 42 42 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 43 43 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 44 44 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 45 45 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 46 46 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 47 47 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 48 48 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.5636 -0.0475 -2.4160 6 6 2.0400 -0.7213 1.2492 7 6 1.5300 -0.0001 2.4984 8 7 2.0178 -0.6911 3.6946 9 6 1.6967 -0.2275 4.9187 10 8 1.0011 0.7651 5.0304 11 6 2.1842 -0.9171 6.1128 12 6 1.8621 -0.4530 7.3392 13 6 2.3523 -1.1455 8.5391 14 6 3.1488 -2.2903 8.4131 15 6 3.6107 -2.9319 9.5393 16 6 3.2770 -2.4519 10.8024 17 8 3.7292 -3.0908 11.9092 18 6 3.4691 -2.5126 13.0987 19 1 2.8536 -1.6264 13.1451 20 6 3.9920 -3.0559 14.2630 21 7 4.7411 -4.1352 14.2064 22 14 3.6308 -2.2551 15.9116 23 1 2.7700 -1.0629 15.7047 24 1 2.9303 -3.2256 16.7905 25 1 4.9057 -1.8398 16.5499 26 6 2.4809 -1.3177 10.9326 27 6 2.0196 -0.6660 9.8119 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 1.8493 -0.4508 -3.2473 37 1 3.1299 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2491 39 1 0.4401 -0.0001 2.4984 40 1 1.8934 1.0276 2.4985 41 1 2.5754 -1.4798 3.6055 42 1 2.8018 -1.7976 6.0137 43 1 1.2449 0.4278 7.4383 44 1 3.4039 -2.6666 7.4334 45 1 4.2286 -3.8124 9.4430 46 1 5.1064 -4.5153 15.0206 47 1 2.2249 -0.9486 11.9147 48 1 1.4023 0.2142 9.9139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295948657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:27 Heat of formation + Delta-G solvation = -93.333803 kcal Electronic energy + Delta-G solvation = -26502.138492 eV Core-core repulsion = 22522.489322 eV Total energy + Delta-G solvation = -3979.649170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.79092 -39.18979 -38.75965 -36.91624 -36.18575 -34.19619 -33.19724 -32.29715 -30.43808 -29.52795 -27.96675 -27.62756 -26.98522 -25.69127 -24.02144 -22.55763 -22.08574 -20.78167 -19.58195 -18.91859 -18.15922 -17.78330 -17.14598 -16.91461 -16.28337 -15.84561 -15.37292 -15.00959 -14.84416 -14.62195 -14.43100 -14.12745 -14.09232 -13.83435 -13.74516 -13.29853 -13.04487 -13.03942 -13.03106 -12.59788 -12.24145 -12.12919 -11.94344 -11.79644 -11.71702 -11.63507 -11.23167 -11.16609 -11.13412 -11.07475 -10.78677 -10.66446 -10.53455 -10.42474 -9.78093 -9.60833 -9.49852 -9.10193 -8.84983 -8.38672 -7.11707 -6.65713 -4.20628 1.07592 2.13049 2.56202 3.03273 3.04569 3.10258 3.16303 3.59584 3.78998 3.81830 4.31014 4.33407 4.50716 4.60885 4.80372 4.82295 4.91913 4.96887 5.03927 5.06085 5.09371 5.20564 5.24011 5.27416 5.45520 5.52352 5.56482 5.60665 5.63577 5.63879 5.66775 5.72550 5.80184 6.00830 6.02814 6.04703 6.11758 6.37075 6.46906 6.49931 6.60896 6.78857 6.91850 7.12794 7.15991 7.23349 7.27902 7.55797 7.63519 7.79804 8.35697 8.79287 9.46164 10.50996 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.001437 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.828586 B =19481.280989 C =19936.946329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.143 4.143 4 C 0.086 3.914 5 O -0.569 6.569 6 C -0.122 4.122 7 C 0.119 3.881 8 N -0.735 5.735 9 C 0.555 3.445 10 O -0.559 6.559 11 C -0.283 4.283 12 C 0.038 3.962 13 C -0.199 4.199 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.378 0.622 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.273 0.727 47 H 0.131 0.869 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 4.831 -26.142 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.200 4.200 4 C 0.008 3.992 5 O -0.374 6.374 6 C -0.160 4.160 7 C -0.005 4.005 8 N -0.387 5.387 9 C 0.347 3.653 10 O -0.440 6.440 11 C -0.304 4.304 12 C 0.018 3.982 13 C -0.200 4.200 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.261 4.261 27 C -0.053 4.053 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.224 0.776 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.233 0.767 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.083 0.917 47 H 0.149 0.851 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.283 5.538 -25.388 26.336 hybrid contribution 0.459 -0.514 0.351 0.773 sum -3.825 5.025 -25.037 25.821 Atomic orbital electron populations 1.21884 0.93700 1.01917 1.02496 1.20474 0.96795 0.96250 0.92453 1.21882 1.00697 0.94923 1.02497 1.22198 0.97087 0.94557 0.85331 1.86474 1.77520 1.57417 1.16023 1.21787 1.01338 0.99734 0.93173 1.21389 0.99595 0.96502 0.82998 1.45867 1.54852 1.32346 1.05629 1.18415 0.79532 0.83798 0.83586 1.90774 1.39240 1.26795 1.87179 1.22437 1.10917 1.05146 0.91907 1.22286 0.90077 0.94669 0.91162 1.18469 1.08763 1.00549 0.92194 1.20882 0.94573 0.93530 0.97162 1.20150 1.07762 1.04122 0.89831 1.19615 0.91080 0.90192 0.88088 1.83904 1.65726 1.44441 1.12327 1.21529 1.32581 1.12010 0.80729 0.88478 1.25391 0.95507 0.96134 0.99410 1.70021 1.29728 1.19078 1.29647 0.85585 0.78695 0.79012 0.79836 1.18847 1.19918 1.19910 1.21103 1.05875 0.99813 0.99323 1.20992 0.95746 0.97221 0.91373 0.92118 0.91738 0.92826 0.92828 0.91736 0.92116 0.93644 0.93648 0.77557 0.90996 0.90994 0.91283 0.91277 0.76700 0.85912 0.85941 0.86420 0.86138 0.91654 0.85108 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 7.98 37.16 0.30 -0.74 16 2 C -0.06 -0.39 0.63 -154.51 -0.10 -0.48 16 3 C -0.14 -1.03 7.98 37.16 0.30 -0.74 16 4 C 0.09 0.48 5.91 37.16 0.22 0.70 16 5 O -0.57 -3.49 12.31 -35.23 -0.43 -3.93 16 6 C -0.12 -0.76 4.38 -26.74 -0.12 -0.88 16 7 C 0.12 1.08 4.97 -4.05 -0.02 1.06 16 8 N -0.74 -7.47 5.55 -61.76 -0.34 -7.81 16 9 C 0.55 7.80 7.74 -13.04 -0.10 7.70 16 10 O -0.56 -9.90 16.23 5.17 0.08 -9.82 16 11 C -0.28 -3.86 9.41 -37.50 -0.35 -4.21 16 12 C 0.04 0.58 9.45 -37.20 -0.35 0.23 16 13 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 14 C -0.04 -0.73 9.40 -39.14 -0.37 -1.10 16 15 C -0.20 -3.97 9.97 -39.46 -0.39 -4.36 16 16 C 0.17 3.82 6.66 -38.89 -0.26 3.57 16 17 O -0.16 -4.42 9.74 0.73 0.01 -4.41 16 18 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 19 H 0.10 2.37 5.18 -52.49 -0.27 2.10 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.85 -23.78 13.67 55.48 0.76 -23.03 16 22 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 27 C -0.03 -0.62 9.78 -39.15 -0.38 -1.01 16 28 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 29 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.38 0.74 9.12 45.56 0.42 1.15 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 40 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 41 H 0.40 2.96 8.45 -40.82 -0.34 2.61 16 42 H 0.12 1.42 6.07 -52.48 -0.32 1.10 16 43 H 0.12 1.87 7.52 -52.48 -0.39 1.48 16 44 H 0.12 1.61 6.16 -52.48 -0.32 1.29 16 45 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.13 2.68 5.62 -52.49 -0.29 2.39 16 48 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -32.35 395.10 -7.59 -39.94 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.18 Total: 7.41 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.41 Total: -18.78 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.42 Total: -30.84 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.34 Total: -18.16 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.35 -7.59 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295948657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.398 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds