Wall clock time and date at job start Tue Mar 31 2020 19:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 C 1.53003 * 109.46900 * 240.00035 * 2 1 3 5 5 O 1.42906 * 109.46718 * 60.00221 * 4 2 1 6 6 C 1.52997 * 109.46831 * 120.00243 * 2 1 3 7 7 C 1.52994 * 109.47329 * 299.99611 * 6 2 1 8 8 N 1.46497 * 109.47283 * 179.97438 * 7 6 2 9 9 C 1.34780 * 120.00068 * 179.72438 * 8 7 6 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46612 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47242 * 119.99850 * 22 20 18 25 25 H 1.48501 * 109.46802 * 239.99820 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.08994 * 109.46924 * 300.00158 * 1 2 3 29 29 H 1.09002 * 109.46723 * 59.99757 * 1 2 3 30 30 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46843 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47581 * 299.99709 * 3 2 1 33 33 H 1.08997 * 109.47165 * 60.00599 * 3 2 1 34 34 H 1.08999 * 109.46988 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47045 * 300.00328 * 4 2 1 36 36 H 0.96706 * 113.99362 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.46900 * 179.97438 * 6 2 1 38 38 H 1.09000 * 109.47111 * 60.00092 * 6 2 1 39 39 H 1.08999 * 109.46934 * 60.00261 * 7 6 2 40 40 H 1.09000 * 109.47417 * 300.00294 * 7 6 2 41 41 H 0.97000 * 119.99919 * 0.02562 * 8 7 6 42 42 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 43 43 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 44 44 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 45 45 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 46 46 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 47 47 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 48 48 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.5636 -0.0475 -2.4160 6 6 2.0400 -0.7213 1.2492 7 6 1.5300 -0.0001 2.4984 8 7 2.0178 -0.6911 3.6946 9 6 1.6967 -0.2275 4.9187 10 8 1.0011 0.7651 5.0304 11 6 2.1842 -0.9171 6.1128 12 6 1.8621 -0.4530 7.3392 13 6 2.3523 -1.1455 8.5391 14 6 3.1488 -2.2903 8.4131 15 6 3.6107 -2.9319 9.5393 16 6 3.2770 -2.4519 10.8024 17 8 3.7292 -3.0908 11.9092 18 6 3.4691 -2.5126 13.0987 19 1 2.8536 -1.6264 13.1451 20 6 3.9920 -3.0559 14.2630 21 7 4.7411 -4.1352 14.2064 22 14 3.6308 -2.2551 15.9116 23 1 2.7700 -1.0629 15.7047 24 1 2.9303 -3.2256 16.7905 25 1 4.9057 -1.8398 16.5499 26 6 2.4809 -1.3177 10.9326 27 6 2.0196 -0.6660 9.8119 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 1.8493 -0.4508 -3.2473 37 1 3.1299 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2491 39 1 0.4401 -0.0001 2.4984 40 1 1.8934 1.0276 2.4985 41 1 2.5754 -1.4798 3.6055 42 1 2.8018 -1.7976 6.0137 43 1 1.2449 0.4278 7.4383 44 1 3.4039 -2.6666 7.4334 45 1 4.2286 -3.8124 9.4430 46 1 5.1064 -4.5153 15.0206 47 1 2.2249 -0.9486 11.9147 48 1 1.4023 0.2142 9.9139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295948657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:26 Heat of formation + Delta-G solvation = -115.956541 kcal Electronic energy + Delta-G solvation = -26503.119487 eV Core-core repulsion = 22522.489322 eV Total energy + Delta-G solvation = -3980.630165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93595 -40.64778 -39.43960 -38.48517 -36.79399 -35.04837 -34.72678 -33.97894 -31.96311 -30.50142 -29.18895 -28.20272 -27.55124 -27.41581 -25.07180 -23.82119 -23.37300 -22.03897 -20.77658 -19.90317 -19.43414 -18.83803 -18.37651 -17.95514 -17.21050 -16.56805 -16.45270 -16.36518 -15.97352 -15.93277 -15.61825 -15.53657 -15.09287 -14.98764 -14.81040 -14.60087 -14.26370 -14.10027 -13.68402 -13.60811 -13.59398 -13.31061 -13.14530 -12.81944 -12.74708 -12.72079 -12.55522 -12.26405 -12.20046 -12.10575 -11.80672 -11.68989 -11.29304 -11.20772 -11.11750 -10.95518 -10.80703 -10.57930 -10.01629 -9.88607 -8.67142 -8.52114 -6.18250 -0.23554 0.59096 1.14353 1.36104 1.45247 1.53868 2.15270 2.27692 2.38829 2.86869 3.18354 3.36044 3.43037 3.74868 3.81565 3.91068 3.96304 4.09284 4.13466 4.23929 4.26071 4.33083 4.37264 4.48595 4.50354 4.64081 4.65890 4.68322 4.71572 4.86245 4.95294 4.98888 5.00320 5.03912 5.08113 5.13935 5.20290 5.21521 5.29822 5.34247 5.45133 5.45373 5.54999 5.60008 5.64548 5.82253 5.97771 6.11134 6.63743 6.92500 6.96370 7.31561 7.69502 8.70115 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.001437 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.828586 B =19481.280989 C =19936.946329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.141 4.141 4 C 0.086 3.914 5 O -0.590 6.590 6 C -0.111 4.111 7 C 0.117 3.883 8 N -0.715 5.715 9 C 0.547 3.453 10 O -0.598 6.598 11 C -0.244 4.244 12 C 0.013 3.987 13 C -0.170 4.170 14 C -0.037 4.037 15 C -0.206 4.206 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.417 4.417 19 H 0.105 0.895 20 C -0.017 4.017 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.395 0.605 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.417 0.583 42 H 0.154 0.846 43 H 0.123 0.877 44 H 0.162 0.838 45 H 0.124 0.876 46 H 0.275 0.725 47 H 0.124 0.876 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 5.411 -29.399 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.198 4.198 4 C 0.009 3.991 5 O -0.398 6.398 6 C -0.149 4.149 7 C -0.006 4.006 8 N -0.366 5.366 9 C 0.338 3.662 10 O -0.481 6.481 11 C -0.264 4.264 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.055 4.055 15 C -0.225 4.225 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.122 0.878 20 C -0.216 4.216 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.175 1.175 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.179 0.821 45 H 0.142 0.858 46 H 0.084 0.916 47 H 0.142 0.858 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.653 6.119 -28.751 29.761 hybrid contribution 0.418 -0.503 0.668 0.935 sum -4.235 5.616 -28.084 28.951 Atomic orbital electron populations 1.21852 0.94490 1.01990 1.01458 1.20489 0.96147 0.95949 0.93529 1.21850 1.01034 0.95452 1.01457 1.22198 0.97687 0.94683 0.84549 1.86432 1.77965 1.58238 1.17159 1.21705 1.02156 0.99886 0.91138 1.21458 0.99058 0.96407 0.83708 1.45758 1.53693 1.32349 1.04809 1.18574 0.79363 0.83447 0.84798 1.90778 1.40980 1.28547 1.87825 1.22785 1.08063 1.04475 0.91102 1.22165 0.92013 0.95579 0.90929 1.18786 1.06194 0.99498 0.92611 1.21298 0.93386 0.92819 0.98003 1.20430 1.07880 1.04511 0.89689 1.20200 0.92215 0.91519 0.88393 1.83885 1.68922 1.46514 1.13211 1.21935 1.33266 1.12646 0.81400 0.87753 1.26584 0.95198 0.96665 1.03159 1.70150 1.32674 1.21555 1.30640 0.84535 0.78784 0.78335 0.74633 1.17459 1.19292 1.19315 1.21193 1.05855 0.99557 1.00190 1.21313 0.95831 0.97943 0.90862 0.93107 0.92821 0.92161 0.92176 0.92817 0.93111 0.92523 0.92518 0.75577 0.89471 0.89452 0.92373 0.92392 0.74594 0.82825 0.85946 0.82076 0.85841 0.91605 0.85848 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.98 71.98 0.57 -1.25 16 2 C -0.06 -0.65 0.63 -52.18 -0.03 -0.68 16 3 C -0.14 -1.83 7.98 71.98 0.57 -1.25 16 4 C 0.09 0.70 5.91 71.98 0.43 1.12 16 5 O -0.59 -6.02 12.31 -148.98 -1.83 -7.85 16 6 C -0.11 -0.97 4.38 30.59 0.13 -0.83 16 7 C 0.12 1.80 4.97 86.38 0.43 2.23 16 8 N -0.71 -11.54 5.55 -467.51 -2.60 -14.14 16 9 C 0.55 13.32 7.74 86.33 0.67 13.99 16 10 O -0.60 -19.76 16.23 -4.41 -0.07 -19.83 16 11 C -0.24 -5.43 9.41 23.61 0.22 -5.21 16 12 C 0.01 0.35 9.45 23.82 0.23 0.57 16 13 C -0.17 -5.26 5.87 -20.13 -0.12 -5.38 16 14 C -0.04 -1.15 9.40 22.55 0.21 -0.93 16 15 C -0.21 -8.11 9.97 22.35 0.22 -7.89 16 16 C 0.13 6.12 6.66 22.72 0.15 6.27 16 17 O -0.22 -12.73 9.74 -20.32 -0.20 -12.93 16 18 C -0.42 -23.44 9.48 67.93 0.64 -22.80 16 19 H 0.11 5.39 5.18 -2.91 -0.02 5.37 16 20 C -0.02 -0.95 5.49 84.85 0.47 -0.48 16 21 N -0.91 -54.21 13.67 21.62 0.30 -53.91 16 22 Si 1.02 41.49 29.55 68.60 2.03 43.52 16 23 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 26 C -0.25 -10.44 9.14 22.34 0.20 -10.24 16 27 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 28 H 0.05 0.74 6.43 -2.39 -0.02 0.72 16 29 H 0.05 0.81 7.68 -2.39 -0.02 0.79 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.81 7.68 -2.39 -0.02 0.79 16 33 H 0.05 0.74 6.43 -2.39 -0.02 0.73 16 34 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.39 0.68 9.12 -74.05 -0.68 0.01 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 40 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 41 H 0.42 3.90 8.45 -92.71 -0.78 3.12 16 42 H 0.15 2.48 6.07 -2.91 -0.02 2.46 16 43 H 0.12 3.37 7.52 -2.91 -0.02 3.35 16 44 H 0.16 3.48 6.16 -2.91 -0.02 3.46 16 45 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 46 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 47 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 48 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -75.96 395.10 2.39 -73.57 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.46 Total: 25.52 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 5.22 Total: -33.95 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -2.30 Total: -68.05 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.10 Total: -40.61 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -75.96 2.39 -73.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295948657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.387 kcal (2) G-P(sol) polarization free energy of solvation -75.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds