Wall clock time and date at job start Tue Mar 31 2020 18:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00186 * 2 1 4 4 H 1.09001 * 109.45988 * 330.02231 * 3 2 1 5 5 C 1.53038 * 109.45853 * 90.00094 * 3 2 1 6 6 C 1.53195 * 109.31028 * 181.37090 * 5 3 2 7 7 N 1.46924 * 108.77536 * 305.36411 * 6 5 3 8 8 C 1.34779 * 120.63093 * 233.58291 * 7 6 5 9 9 O 1.21591 * 120.00034 * 174.17314 * 8 7 6 10 10 C 1.47538 * 119.99586 * 354.17487 * 8 7 6 11 11 C 1.39661 * 120.19931 * 306.19589 * 10 8 7 12 12 C 1.37832 * 119.91743 * 180.29875 * 11 10 8 13 13 C 1.38573 * 120.32420 * 359.68423 * 12 11 10 14 14 C 1.38027 * 120.40206 * 0.02562 * 13 12 11 15 15 C 1.38841 * 120.06956 * 0.02577 * 14 13 12 16 16 O 1.35519 * 120.16030 * 179.97438 * 15 14 13 17 17 C 1.34819 * 116.99653 * 5.43435 * 16 15 14 18 18 H 1.07996 * 120.00630 * 354.95033 * 17 16 15 19 19 C 1.38700 * 119.99449 * 174.95341 * 17 16 15 20 20 N 1.31515 * 120.00586 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99706 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47113 * 89.99970 * 21 19 17 23 23 H 1.48496 * 109.47083 * 209.99742 * 21 19 17 24 24 H 1.48500 * 109.47044 * 330.00353 * 21 19 17 25 25 C 1.46930 * 118.73862 * 53.86252 * 7 6 5 26 26 C 1.53041 * 109.44918 * 210.06116 * 3 2 1 27 27 C 1.53004 * 109.49831 * 298.57629 * 26 3 2 28 28 C 1.53004 * 109.49844 * 58.63678 * 26 3 2 29 29 H 1.09002 * 109.46944 * 59.99925 * 1 2 3 30 30 H 1.08994 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46860 * 300.00306 * 1 2 3 32 32 H 1.09001 * 109.50041 * 61.42316 * 5 3 2 33 33 H 1.09002 * 109.52350 * 301.33527 * 5 3 2 34 34 H 1.08999 * 109.58916 * 185.57526 * 6 5 3 35 35 H 1.09004 * 109.58316 * 65.15341 * 6 5 3 36 36 H 1.08001 * 120.04241 * 0.02562 * 11 10 8 37 37 H 1.08002 * 119.83794 * 179.70157 * 12 11 10 38 38 H 1.08002 * 119.80114 * 180.02562 * 13 12 11 39 39 H 1.07995 * 119.96702 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00407 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.58266 * 65.92619 * 25 7 6 42 42 H 1.09000 * 109.58299 * 186.34738 * 25 7 6 43 43 H 1.08998 * 109.47492 * 59.99408 * 27 26 3 44 44 H 1.09003 * 109.46973 * 180.02562 * 27 26 3 45 45 H 1.09002 * 109.46530 * 299.99748 * 27 26 3 46 46 H 1.08997 * 109.47080 * 60.00139 * 28 26 3 47 47 H 1.08996 * 109.47392 * 180.02562 * 28 26 3 48 48 H 1.09001 * 109.46595 * 300.00038 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3447 1.9993 -0.5135 5 6 2.2177 1.7712 1.4430 6 6 2.8091 3.1844 1.4391 7 7 4.0313 3.1833 0.6238 8 6 5.1932 3.6447 1.1275 9 8 6.2189 3.5415 0.4828 10 6 5.2204 4.2749 2.4613 11 6 4.3628 5.3377 2.7537 12 6 4.3974 5.9262 3.9996 13 6 5.2750 5.4642 4.9674 14 6 6.1242 4.4108 4.6947 15 6 6.1040 3.8065 3.4449 16 8 6.9372 2.7724 3.1750 17 6 7.6820 2.3040 4.1965 18 1 7.6594 2.8024 5.1544 19 6 8.4773 1.1818 4.0172 20 7 8.5052 0.5751 2.8507 21 14 9.5098 0.5330 5.4324 22 1 8.7200 -0.4566 6.2084 23 1 10.7308 -0.1197 4.8957 24 1 9.8991 1.6595 6.3182 25 6 3.9616 2.6755 -0.7532 26 6 3.3585 1.2630 -0.7229 27 6 4.3051 0.3155 0.0171 28 6 3.1546 0.7651 -2.1552 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9028 1.0915 1.9498 33 1 1.2605 1.7788 1.9644 34 1 3.0507 3.4822 2.4594 35 1 2.0869 3.8815 1.0142 36 1 3.6765 5.7010 2.0030 37 1 3.7371 6.7512 4.2227 38 1 5.2947 5.9313 5.9410 39 1 6.8050 4.0562 5.4543 40 1 9.0611 -0.2099 2.7255 41 1 3.3315 3.3321 -1.3532 42 1 4.9639 2.6375 -1.1797 43 1 3.8734 -0.6851 0.0396 44 1 5.2653 0.2860 -0.4979 45 1 4.4510 0.6713 1.0370 46 1 2.4812 1.4409 -2.6823 47 1 4.1151 0.7345 -2.6695 48 1 2.7222 -0.2353 -2.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296306366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:14 Heat of formation + Delta-G solvation = -78.412024 kcal Electronic energy + Delta-G solvation = -30518.983741 eV Core-core repulsion = 26539.981628 eV Total energy + Delta-G solvation = -3979.002113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.41610 -39.19526 -37.93332 -36.40095 -36.13383 -33.95282 -32.36342 -31.22997 -30.54527 -28.98845 -27.11318 -26.94304 -26.57062 -25.39436 -24.58873 -22.54665 -22.13251 -21.49699 -19.44959 -18.53448 -18.04658 -17.24158 -16.61709 -16.19860 -15.83040 -15.30130 -15.20096 -14.78853 -14.70551 -14.39858 -14.17905 -13.82418 -13.61451 -13.59025 -13.32219 -13.10004 -12.95514 -12.65891 -12.38472 -12.30366 -11.96177 -11.75937 -11.73114 -11.54218 -11.42399 -11.26115 -11.18051 -11.05433 -10.90044 -10.80889 -10.72764 -10.56216 -10.46851 -10.17186 -9.61915 -9.45884 -9.01081 -8.89476 -8.25559 -8.18767 -7.34396 -6.47591 -4.07694 1.81616 2.27925 3.11282 3.11627 3.16867 3.34385 3.52389 3.78613 3.92165 4.48132 4.64994 4.78091 4.96199 5.04183 5.09380 5.12980 5.19584 5.23582 5.26540 5.30481 5.42005 5.45069 5.52538 5.55907 5.60407 5.69613 5.74814 5.86126 5.90140 5.95825 5.96316 6.09416 6.14611 6.17637 6.21485 6.27810 6.44511 6.50380 6.55249 6.63804 6.85707 6.91342 6.98564 7.04067 7.19911 7.23609 7.28186 7.66402 7.87375 7.96127 8.90771 8.94853 9.62587 10.67684 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004483 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.302746 B = 6244.578771 C = 7552.698010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.104 3.896 4 H 0.057 0.943 5 C -0.161 4.161 6 C 0.114 3.886 7 N -0.616 5.616 8 C 0.581 3.419 9 O -0.519 6.519 10 C -0.217 4.217 11 C -0.043 4.043 12 C -0.224 4.224 13 C -0.055 4.055 14 C -0.234 4.234 15 C 0.187 3.813 16 O -0.148 6.148 17 C -0.400 4.400 18 H 0.094 0.906 19 C 0.045 3.955 20 N -0.842 5.842 21 Si 0.941 3.059 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 C 0.126 3.874 26 C -0.073 4.073 27 C -0.132 4.132 28 C -0.135 4.135 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.272 0.728 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.796 2.696 -3.666 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.046 3.954 4 H 0.075 0.925 5 C -0.199 4.199 6 C -0.010 4.010 7 N -0.351 5.351 8 C 0.371 3.629 9 O -0.394 6.394 10 C -0.221 4.221 11 C -0.061 4.061 12 C -0.243 4.243 13 C -0.074 4.074 14 C -0.254 4.254 15 C 0.129 3.871 16 O -0.048 6.048 17 C -0.476 4.476 18 H 0.111 0.889 19 C -0.162 4.162 20 N -0.475 5.475 21 Si 0.765 3.235 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 C 0.003 3.997 26 C -0.074 4.074 27 C -0.189 4.189 28 C -0.193 4.193 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.892 2.113 -4.353 15.659 hybrid contribution 0.157 -0.064 0.903 0.919 sum -14.735 2.050 -3.450 15.272 Atomic orbital electron populations 1.22745 0.81833 1.02370 0.99613 1.87950 1.18840 1.27838 1.94952 1.22103 0.94034 0.84118 0.95118 0.92474 1.22505 1.01871 0.97954 0.97613 1.21680 0.86111 0.95743 0.97459 1.47951 1.09346 1.64177 1.13595 1.18190 0.82171 0.76963 0.85587 1.90773 1.31977 1.56023 1.60599 1.18717 1.04328 1.04585 0.94492 1.20696 0.95488 0.93791 0.96156 1.20470 1.04831 1.04460 0.94570 1.20884 0.93905 0.94613 0.97995 1.21138 1.05120 1.01077 0.98032 1.19204 0.87874 0.88458 0.91567 1.84019 1.44474 1.39720 1.36565 1.21405 1.23047 1.11629 0.91496 0.88856 1.25344 0.97413 0.95395 0.98075 1.70068 1.36629 1.18591 1.22174 0.85721 0.78941 0.79273 0.79555 1.19777 1.20133 1.19073 1.21670 1.02683 0.92138 0.83234 1.21085 0.94141 0.96229 0.95957 1.21744 0.97931 0.98207 1.01024 1.21744 1.01619 1.01488 0.94463 0.94399 0.89970 0.94268 0.89710 0.91037 0.88435 0.92136 0.86808 0.87203 0.87178 0.85073 0.91826 0.92162 0.88397 0.92462 0.92542 0.91768 0.93208 0.92300 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.83 9.00 -35.23 -0.32 -5.14 16 3 C 0.10 1.31 1.70 -26.69 -0.05 1.26 16 4 H 0.06 0.62 7.79 -51.93 -0.40 0.22 16 5 C -0.16 -2.14 5.35 -26.61 -0.14 -2.28 16 6 C 0.11 1.58 5.56 -3.71 -0.02 1.56 16 7 N -0.62 -10.63 2.40 -173.73 -0.42 -11.04 16 8 C 0.58 12.83 6.82 -12.47 -0.09 12.75 16 9 O -0.52 -13.77 16.18 2.12 0.03 -13.74 16 10 C -0.22 -4.66 4.62 -104.81 -0.48 -5.14 16 11 C -0.04 -0.73 7.77 -39.20 -0.30 -1.04 16 12 C -0.22 -3.61 10.03 -39.61 -0.40 -4.01 16 13 C -0.06 -0.96 10.03 -39.53 -0.40 -1.36 16 14 C -0.23 -4.96 9.16 -39.44 -0.36 -5.32 16 15 C 0.19 4.56 6.65 -38.60 -0.26 4.30 16 16 O -0.15 -4.29 8.96 -2.38 -0.02 -4.31 16 17 C -0.40 -11.18 9.49 30.90 0.29 -10.89 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 20 N -0.84 -25.02 13.67 55.48 0.76 -24.26 16 21 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 25 C 0.13 1.93 5.16 -3.49 -0.02 1.91 16 26 C -0.07 -1.03 0.61 -154.16 -0.09 -1.12 16 27 C -0.13 -2.30 7.86 37.16 0.29 -2.01 16 28 C -0.14 -1.61 8.32 37.16 0.31 -1.30 16 29 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.33 7.85 -51.93 -0.41 -0.08 16 32 H 0.08 1.38 6.34 -51.93 -0.33 1.05 16 33 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 34 H 0.10 1.46 5.39 -51.93 -0.28 1.18 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.63 7.75 -52.49 -0.41 1.23 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.74 7.00 -51.93 -0.36 1.37 16 43 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.78 7.65 -51.93 -0.40 0.39 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -33.59 380.02 -7.18 -40.77 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.21 Total: 6.74 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.71 Total: -10.20 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.34 Total: -35.31 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.30 Total: -23.19 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.59 -7.18 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296306366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.638 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds