Wall clock time and date at job start Tue Mar 31 2020 18:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00186 * 2 1 4 4 H 1.09001 * 109.45988 * 330.02231 * 3 2 1 5 5 C 1.53038 * 109.45853 * 90.00094 * 3 2 1 6 6 C 1.53195 * 109.31028 * 181.37090 * 5 3 2 7 7 N 1.46924 * 108.77536 * 305.36411 * 6 5 3 8 8 C 1.34779 * 120.63093 * 233.58291 * 7 6 5 9 9 O 1.21591 * 120.00034 * 174.17314 * 8 7 6 10 10 C 1.47538 * 119.99586 * 354.17487 * 8 7 6 11 11 C 1.39661 * 120.19931 * 306.19589 * 10 8 7 12 12 C 1.37832 * 119.91743 * 180.29875 * 11 10 8 13 13 C 1.38573 * 120.32420 * 359.68423 * 12 11 10 14 14 C 1.38027 * 120.40206 * 0.02562 * 13 12 11 15 15 C 1.38841 * 120.06956 * 0.02577 * 14 13 12 16 16 O 1.35519 * 120.16030 * 179.97438 * 15 14 13 17 17 C 1.34819 * 116.99653 * 5.43435 * 16 15 14 18 18 H 1.07996 * 120.00630 * 354.95033 * 17 16 15 19 19 C 1.38700 * 119.99449 * 174.95341 * 17 16 15 20 20 N 1.31515 * 120.00586 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99706 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47113 * 89.99970 * 21 19 17 23 23 H 1.48496 * 109.47083 * 209.99742 * 21 19 17 24 24 H 1.48500 * 109.47044 * 330.00353 * 21 19 17 25 25 C 1.46930 * 118.73862 * 53.86252 * 7 6 5 26 26 C 1.53041 * 109.44918 * 210.06116 * 3 2 1 27 27 C 1.53004 * 109.49831 * 298.57629 * 26 3 2 28 28 C 1.53004 * 109.49844 * 58.63678 * 26 3 2 29 29 H 1.09002 * 109.46944 * 59.99925 * 1 2 3 30 30 H 1.08994 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46860 * 300.00306 * 1 2 3 32 32 H 1.09001 * 109.50041 * 61.42316 * 5 3 2 33 33 H 1.09002 * 109.52350 * 301.33527 * 5 3 2 34 34 H 1.08999 * 109.58916 * 185.57526 * 6 5 3 35 35 H 1.09004 * 109.58316 * 65.15341 * 6 5 3 36 36 H 1.08001 * 120.04241 * 0.02562 * 11 10 8 37 37 H 1.08002 * 119.83794 * 179.70157 * 12 11 10 38 38 H 1.08002 * 119.80114 * 180.02562 * 13 12 11 39 39 H 1.07995 * 119.96702 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00407 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.58266 * 65.92619 * 25 7 6 42 42 H 1.09000 * 109.58299 * 186.34738 * 25 7 6 43 43 H 1.08998 * 109.47492 * 59.99408 * 27 26 3 44 44 H 1.09003 * 109.46973 * 180.02562 * 27 26 3 45 45 H 1.09002 * 109.46530 * 299.99748 * 27 26 3 46 46 H 1.08997 * 109.47080 * 60.00139 * 28 26 3 47 47 H 1.08996 * 109.47392 * 180.02562 * 28 26 3 48 48 H 1.09001 * 109.46595 * 300.00038 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3447 1.9993 -0.5135 5 6 2.2177 1.7712 1.4430 6 6 2.8091 3.1844 1.4391 7 7 4.0313 3.1833 0.6238 8 6 5.1932 3.6447 1.1275 9 8 6.2189 3.5415 0.4828 10 6 5.2204 4.2749 2.4613 11 6 4.3628 5.3377 2.7537 12 6 4.3974 5.9262 3.9996 13 6 5.2750 5.4642 4.9674 14 6 6.1242 4.4108 4.6947 15 6 6.1040 3.8065 3.4449 16 8 6.9372 2.7724 3.1750 17 6 7.6820 2.3040 4.1965 18 1 7.6594 2.8024 5.1544 19 6 8.4773 1.1818 4.0172 20 7 8.5052 0.5751 2.8507 21 14 9.5098 0.5330 5.4324 22 1 8.7200 -0.4566 6.2084 23 1 10.7308 -0.1197 4.8957 24 1 9.8991 1.6595 6.3182 25 6 3.9616 2.6755 -0.7532 26 6 3.3585 1.2630 -0.7229 27 6 4.3051 0.3155 0.0171 28 6 3.1546 0.7651 -2.1552 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9028 1.0915 1.9498 33 1 1.2605 1.7788 1.9644 34 1 3.0507 3.4822 2.4594 35 1 2.0869 3.8815 1.0142 36 1 3.6765 5.7010 2.0030 37 1 3.7371 6.7512 4.2227 38 1 5.2947 5.9313 5.9410 39 1 6.8050 4.0562 5.4543 40 1 9.0611 -0.2099 2.7255 41 1 3.3315 3.3321 -1.3532 42 1 4.9639 2.6375 -1.1797 43 1 3.8734 -0.6851 0.0396 44 1 5.2653 0.2860 -0.4979 45 1 4.4510 0.6713 1.0370 46 1 2.4812 1.4409 -2.6823 47 1 4.1151 0.7345 -2.6695 48 1 2.7222 -0.2353 -2.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296306366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:13 Heat of formation + Delta-G solvation = -100.991585 kcal Electronic energy + Delta-G solvation = -30519.962864 eV Core-core repulsion = 26539.981628 eV Total energy + Delta-G solvation = -3979.981236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.81392 -40.69688 -39.43871 -38.06373 -37.39256 -35.26071 -34.35524 -32.44615 -32.06502 -30.61903 -28.33242 -27.96239 -27.79611 -27.29424 -25.79341 -23.98543 -23.31905 -23.13142 -20.94088 -19.91748 -19.70739 -18.85114 -18.05913 -17.36440 -17.22617 -16.72286 -16.41317 -16.36157 -15.92501 -15.88873 -15.68587 -15.42106 -15.20568 -14.77358 -14.69261 -14.46478 -14.32549 -14.19462 -13.75355 -13.58015 -13.43978 -13.13531 -12.98520 -12.85465 -12.80677 -12.65378 -12.59933 -12.43436 -12.35237 -12.15577 -12.12409 -11.91717 -11.74169 -11.45484 -11.28847 -10.85562 -10.73533 -10.39207 -9.78340 -9.59808 -9.05443 -8.48798 -6.19190 0.25845 0.70529 1.30056 1.41203 1.48952 1.74637 2.12432 2.13889 2.79030 2.86245 3.14538 3.41045 3.49360 3.67758 3.82590 3.84456 4.02948 4.11930 4.15876 4.25953 4.29158 4.32196 4.48080 4.53196 4.58483 4.60061 4.65295 4.67397 4.70952 4.73841 4.80143 4.86004 4.90697 4.93893 4.96400 5.03034 5.06722 5.12116 5.16310 5.17629 5.34247 5.40014 5.50846 5.57566 5.67804 5.70149 5.93960 6.16361 6.35736 6.41808 6.92590 7.28782 7.74991 8.72786 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004483 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.302746 B = 6244.578771 C = 7552.698010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.112 3.888 4 H 0.095 0.905 5 C -0.158 4.158 6 C 0.109 3.891 7 N -0.606 5.606 8 C 0.570 3.430 9 O -0.585 6.585 10 C -0.230 4.230 11 C -0.035 4.035 12 C -0.190 4.190 13 C -0.047 4.047 14 C -0.251 4.251 15 C 0.144 3.856 16 O -0.213 6.213 17 C -0.420 4.420 18 H 0.107 0.893 19 C -0.022 4.022 20 N -0.913 5.913 21 Si 1.020 2.980 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.248 1.248 25 C 0.122 3.878 26 C -0.070 4.070 27 C -0.122 4.122 28 C -0.129 4.129 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.270 0.730 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.023 0.977 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.552 5.798 -2.692 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.054 3.946 4 H 0.113 0.887 5 C -0.197 4.197 6 C -0.013 4.013 7 N -0.339 5.339 8 C 0.360 3.640 9 O -0.465 6.465 10 C -0.234 4.234 11 C -0.053 4.053 12 C -0.209 4.209 13 C -0.065 4.065 14 C -0.270 4.270 15 C 0.091 3.909 16 O -0.118 6.118 17 C -0.496 4.496 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.549 5.549 21 Si 0.839 3.161 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.171 1.171 25 C -0.001 4.001 26 C -0.071 4.071 27 C -0.179 4.179 28 C -0.186 4.186 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.760 5.265 -3.354 20.722 hybrid contribution 1.285 -0.757 0.605 1.609 sum -18.475 4.508 -2.749 19.215 Atomic orbital electron populations 1.22976 0.79661 1.03513 1.01049 1.87934 1.21240 1.27858 1.95039 1.22006 0.93249 0.85101 0.94250 0.88709 1.22477 1.02119 0.96589 0.98480 1.21997 0.85246 0.97292 0.96746 1.48015 1.09140 1.62155 1.14564 1.18538 0.82664 0.77057 0.85711 1.90731 1.34523 1.58940 1.62314 1.19123 1.04785 1.05829 0.93660 1.21184 0.94553 0.91648 0.97897 1.21161 1.03087 1.03729 0.92877 1.21398 0.92140 0.92631 1.00313 1.21281 1.06435 1.02601 0.96683 1.19941 0.88617 0.88395 0.93995 1.84011 1.47364 1.42662 1.37715 1.21934 1.23374 1.12199 0.92105 0.87586 1.26705 0.98779 0.95443 1.01146 1.70262 1.39298 1.20044 1.25323 0.84579 0.76788 0.78979 0.75767 1.18543 1.19874 1.17132 1.21851 1.01814 0.93836 0.82549 1.21060 0.94377 0.94252 0.97366 1.21624 0.97811 0.99617 0.98865 1.21690 1.01982 1.02216 0.92722 0.92410 0.89213 0.93206 0.94205 0.87881 0.89664 0.87013 0.82763 0.81725 0.82857 0.86006 0.92063 0.87608 0.92071 0.92090 0.95565 0.95794 0.89973 0.93203 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -9.41 9.00 -148.98 -1.34 -10.75 16 3 C 0.11 2.51 1.70 30.62 0.05 2.56 16 4 H 0.10 1.50 7.79 -2.39 -0.02 1.48 16 5 C -0.16 -3.96 5.35 30.67 0.16 -3.79 16 6 C 0.11 2.74 5.56 86.36 0.48 3.22 16 7 N -0.61 -21.04 2.40 -821.81 -1.97 -23.01 16 8 C 0.57 26.59 6.82 86.70 0.59 27.18 16 9 O -0.59 -34.06 16.18 -0.98 -0.02 -34.08 16 10 C -0.23 -10.07 4.62 -19.99 -0.09 -10.16 16 11 C -0.03 -1.06 7.77 22.52 0.18 -0.89 16 12 C -0.19 -5.03 10.03 22.25 0.22 -4.81 16 13 C -0.05 -1.44 10.03 22.30 0.22 -1.22 16 14 C -0.25 -10.72 9.16 22.36 0.20 -10.51 16 15 C 0.14 7.43 6.65 22.91 0.15 7.58 16 16 O -0.21 -13.61 8.96 -17.07 -0.15 -13.77 16 17 C -0.42 -25.52 9.49 67.93 0.64 -24.87 16 18 H 0.11 5.79 5.20 -2.91 -0.02 5.77 16 19 C -0.02 -1.33 5.49 84.85 0.47 -0.87 16 20 N -0.91 -59.88 13.67 21.62 0.30 -59.58 16 21 Si 1.02 44.71 29.55 68.60 2.03 46.74 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 25 C 0.12 3.73 5.16 86.51 0.45 4.18 16 26 C -0.07 -1.96 0.61 -51.96 -0.03 -1.99 16 27 C -0.12 -4.72 7.86 71.98 0.57 -4.15 16 28 C -0.13 -2.88 8.32 71.98 0.60 -2.29 16 29 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 0.62 7.85 -2.38 -0.02 0.60 16 32 H 0.04 1.36 6.34 -2.39 -0.02 1.34 16 33 H 0.10 1.92 7.85 -2.39 -0.02 1.90 16 34 H 0.09 2.37 5.39 -2.39 -0.01 2.36 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.15 3.52 7.75 -2.91 -0.02 3.50 16 37 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 40 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 41 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.35 7.00 -2.39 -0.02 2.33 16 43 H 0.06 2.22 7.72 -2.39 -0.02 2.21 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.02 1.08 5.97 -2.39 -0.01 1.07 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.49 7.65 -2.39 -0.02 1.47 16 Total: -1.00 -89.34 380.02 5.89 -83.44 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.96 Total: 30.25 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 6.09 Total: -19.25 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.68 Total: -82.59 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -1.51 Total: -58.59 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -89.34 5.89 -83.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296306366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.547 kcal (2) G-P(sol) polarization free energy of solvation -89.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds