Wall clock time and date at job start Tue Mar 31 2020 17:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.36595 * 2 1 4 4 C 1.50878 * 109.36524 * 240.37850 * 2 1 3 5 5 C 1.52571 * 109.35382 * 147.92481 * 4 2 1 6 6 H 1.09004 * 108.51031 * 323.76520 * 5 4 2 7 7 O 1.42894 * 108.51353 * 206.27165 * 5 4 2 8 8 C 1.47092 * 114.32767 * 85.01742 * 5 4 2 9 9 C 1.55417 * 110.34617 * 297.12152 * 8 5 4 10 10 N 1.44585 * 109.29442 * 71.28593 * 9 8 5 11 11 C 1.34774 * 118.64185 * 89.40796 * 10 9 8 12 12 O 1.21600 * 119.99662 * 186.32978 * 11 10 9 13 13 C 1.47527 * 120.00234 * 6.33121 * 11 10 9 14 14 C 1.39671 * 120.19772 * 333.27868 * 13 11 10 15 15 C 1.37832 * 119.92030 * 179.97438 * 14 13 11 16 16 C 1.38570 * 120.32311 * 0.02562 * 15 14 13 17 17 C 1.38031 * 120.40188 * 359.70428 * 16 15 14 18 18 C 1.38830 * 120.06985 * 0.55170 * 17 16 15 19 19 O 1.35522 * 120.15946 * 179.74586 * 18 17 16 20 20 C 1.34810 * 117.00004 * 5.38185 * 19 18 17 21 21 H 1.08001 * 120.00444 * 354.63441 * 20 19 18 22 22 C 1.38698 * 119.99977 * 174.90986 * 20 19 18 23 23 N 1.31520 * 120.00008 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00075 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46979 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47310 * 120.00051 * 24 22 20 27 27 H 1.48506 * 109.47314 * 240.00274 * 24 22 20 28 28 C 1.47605 * 122.71016 * 269.12922 * 10 9 8 29 29 H 1.08999 * 109.47091 * 300.26083 * 1 2 3 30 30 H 1.09007 * 109.46694 * 60.25767 * 1 2 3 31 31 H 1.08993 * 109.47054 * 180.25519 * 1 2 3 32 32 H 1.08998 * 109.46913 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46905 * 300.00394 * 3 2 1 34 34 H 1.09000 * 109.47719 * 60.00591 * 3 2 1 35 35 H 1.08998 * 109.49088 * 267.88965 * 4 2 1 36 36 H 1.08997 * 109.49145 * 27.95980 * 4 2 1 37 37 H 0.96702 * 114.00074 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.32810 * 57.45445 * 8 5 4 39 39 H 1.08996 * 109.32989 * 177.10810 * 8 5 4 40 40 H 1.08995 * 109.49928 * 311.40602 * 9 8 5 41 41 H 1.09002 * 109.71235 * 191.29603 * 9 8 5 42 42 H 1.08001 * 120.03898 * 0.02562 * 14 13 11 43 43 H 1.07997 * 119.83369 * 180.02562 * 15 14 13 44 44 H 1.08004 * 119.79994 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.96116 * 180.27693 * 17 16 15 46 46 H 0.97002 * 119.99931 * 179.97438 * 23 22 20 47 47 H 1.08996 * 108.94464 * 163.09769 * 28 10 9 48 48 H 1.09003 * 108.94602 * 281.80932 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0374 1.4434 0.0000 4 6 2.0303 -0.7035 -1.2374 5 6 3.3488 -0.0749 -1.6783 6 1 3.3017 0.9973 -1.4876 7 8 3.4986 -0.2747 -3.0852 8 6 4.5357 -0.6182 -1.0004 9 6 4.4658 -0.3303 0.5253 10 7 3.4427 -1.1599 1.1216 11 6 3.7846 -2.3827 1.5736 12 8 2.9259 -3.1451 1.9734 13 6 5.2008 -2.7961 1.5834 14 6 6.1017 -2.2386 0.6733 15 6 7.4236 -2.6287 0.6878 16 6 7.8645 -3.5727 1.6014 17 6 6.9868 -4.1282 2.5105 18 6 5.6506 -3.7513 2.5070 19 8 4.7863 -4.2993 3.3953 20 6 5.3069 -5.1209 4.3287 21 1 6.3536 -5.3847 4.2927 22 6 4.4972 -5.6319 5.3322 23 7 3.2213 -5.3153 5.3727 24 14 5.2184 -6.7709 6.6252 25 1 6.6657 -6.9694 6.3581 26 1 5.0421 -6.1672 7.9705 27 1 4.5211 -8.0811 6.5753 28 6 2.0405 -0.7205 1.2610 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5099 -0.8924 31 1 -0.3633 -1.0276 0.0046 32 1 3.1274 1.4454 -0.0005 33 1 1.6730 1.9566 -0.8900 34 1 1.6733 1.9566 0.8900 35 1 2.1866 -1.7596 -1.0172 36 1 1.2947 -0.6031 -2.0354 37 1 4.3137 0.0959 -3.4505 38 1 4.5831 -1.6949 -1.1635 39 1 5.4310 -0.1514 -1.4110 40 1 4.2214 0.7195 0.6866 41 1 5.4281 -0.5535 0.9860 42 1 5.7631 -1.5022 -0.0405 43 1 8.1191 -2.1964 -0.0163 44 1 8.9021 -3.8725 1.6051 45 1 7.3390 -4.8601 3.2223 46 1 2.6549 -5.6730 6.0743 47 1 1.4135 -1.5921 1.4489 48 1 1.9652 -0.0412 2.1102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297128487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:20 Heat of formation + Delta-G solvation = -30.201468 kcal Electronic energy + Delta-G solvation = -30629.674446 eV Core-core repulsion = 26652.762900 eV Total energy + Delta-G solvation = -3976.911546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.05578 -39.18275 -37.79441 -36.67106 -36.24897 -34.80823 -32.34448 -31.96035 -30.47376 -29.03418 -28.14991 -27.58200 -26.27187 -25.33420 -24.44224 -22.52993 -21.98919 -20.96139 -19.10362 -18.70800 -18.10658 -17.68821 -16.96716 -16.42555 -15.81965 -15.45055 -15.08703 -14.82476 -14.50484 -14.29501 -14.18839 -13.98809 -13.79966 -13.64546 -13.43811 -13.08206 -12.78082 -12.56107 -12.34399 -12.25940 -12.01546 -11.97619 -11.69359 -11.60986 -11.51482 -11.35356 -11.15234 -11.00215 -10.89306 -10.83767 -10.59948 -10.48034 -10.45403 -10.18111 -9.67574 -9.52331 -8.88560 -8.84507 -8.22851 -8.15872 -7.30305 -6.45677 -4.05511 1.74864 2.30493 3.11457 3.11815 3.17926 3.41344 3.63727 3.93011 4.07051 4.50805 4.54368 4.64320 4.68888 4.79199 5.01249 5.06160 5.07421 5.16572 5.26647 5.32992 5.35865 5.50227 5.53251 5.54906 5.58356 5.66755 5.70778 5.75551 5.77097 5.86301 5.88729 5.99611 6.04867 6.08840 6.16875 6.17260 6.22826 6.29816 6.40123 6.57902 6.68865 6.92498 7.01798 7.06258 7.25212 7.29322 7.55784 7.70341 7.87856 7.98630 8.94701 9.01746 9.66733 10.68945 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.003906 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.142139 B = 7167.519078 C = 8602.779472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.160 4.160 4 C -0.099 4.099 5 C 0.099 3.901 6 H 0.066 0.934 7 O -0.574 6.574 8 C -0.187 4.187 9 C 0.085 3.915 10 N -0.613 5.613 11 C 0.559 3.441 12 O -0.506 6.506 13 C -0.224 4.224 14 C -0.084 4.084 15 C -0.232 4.232 16 C -0.052 4.052 17 C -0.239 4.239 18 C 0.190 3.810 19 O -0.133 6.133 20 C -0.402 4.402 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.837 5.837 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.274 1.274 28 C 0.123 3.877 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.372 0.628 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.157 0.843 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.271 0.729 47 H 0.094 0.906 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 13.870 -11.637 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.217 4.217 4 C -0.137 4.137 5 C 0.041 3.959 6 H 0.083 0.917 7 O -0.380 6.380 8 C -0.225 4.225 9 C -0.039 4.039 10 N -0.347 5.347 11 C 0.350 3.650 12 O -0.380 6.380 13 C -0.229 4.229 14 C -0.102 4.102 15 C -0.251 4.251 16 C -0.071 4.071 17 C -0.258 4.258 18 C 0.131 3.869 19 O -0.032 6.032 20 C -0.478 4.478 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.469 5.469 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 C 0.001 3.999 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.219 0.781 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.174 0.826 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.149 0.851 46 H 0.081 0.919 47 H 0.112 0.888 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.704 13.095 -11.100 17.181 hybrid contribution 1.168 -0.350 0.574 1.348 sum 1.872 12.744 -10.527 16.635 Atomic orbital electron populations 1.21861 0.93371 1.02452 1.01877 1.20575 0.96220 0.95461 0.95075 1.22440 1.01949 0.95443 1.01827 1.21052 0.95406 1.00739 0.96467 1.21046 0.94792 0.99726 0.80321 0.91665 1.86583 1.45697 1.82925 1.22775 1.22347 0.98798 1.04008 0.97382 1.22493 0.94388 0.95686 0.91285 1.47426 1.08394 1.16676 1.62247 1.18355 0.88842 0.80754 0.77058 1.90868 1.50751 1.51275 1.45099 1.18780 0.93563 1.05743 1.04801 1.22342 0.93178 0.97446 0.97208 1.20524 0.95895 1.04674 1.04051 1.20922 0.98172 0.94482 0.93483 1.21138 0.93424 1.06808 1.04436 1.19274 0.88890 0.89318 0.89393 1.84116 1.32105 1.51882 1.35099 1.21517 0.96231 1.24859 1.05163 0.88828 1.25377 0.95266 0.97946 0.97742 1.70120 1.04364 1.40536 1.31885 0.85654 0.79037 0.79192 0.79565 1.18977 1.20033 1.19994 1.21829 0.82551 1.00034 0.95521 0.92260 0.92327 0.92054 0.90918 0.92366 0.92456 0.90838 0.90796 0.78124 0.89529 0.90292 0.90221 0.87148 0.82626 0.87357 0.87318 0.85145 0.91911 0.88812 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.16 37.16 0.30 -1.10 16 2 C -0.07 -0.82 0.75 -155.08 -0.12 -0.94 16 3 C -0.16 -1.46 6.75 37.16 0.25 -1.21 16 4 C -0.10 -1.23 4.55 -28.02 -0.13 -1.36 16 5 C 0.10 1.05 2.72 -29.79 -0.08 0.97 16 6 H 0.07 0.59 4.65 -51.93 -0.24 0.35 16 7 O -0.57 -6.22 13.19 -35.23 -0.46 -6.68 16 8 C -0.19 -2.02 3.47 -28.28 -0.10 -2.11 16 9 C 0.09 1.07 4.84 -3.78 -0.02 1.05 16 10 N -0.61 -10.15 2.23 -173.41 -0.39 -10.53 16 11 C 0.56 12.42 7.37 -12.47 -0.09 12.33 16 12 O -0.51 -13.81 14.91 -14.54 -0.22 -14.03 16 13 C -0.22 -4.90 5.60 -104.81 -0.59 -5.49 16 14 C -0.08 -1.44 6.98 -39.20 -0.27 -1.71 16 15 C -0.23 -3.78 10.03 -39.61 -0.40 -4.17 16 16 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 17 C -0.24 -5.17 9.16 -39.44 -0.36 -5.54 16 18 C 0.19 4.76 6.63 -38.60 -0.26 4.51 16 19 O -0.13 -3.96 8.18 -19.01 -0.16 -4.11 16 20 C -0.40 -11.44 9.49 30.90 0.29 -11.15 16 21 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 22 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 23 N -0.84 -25.31 13.67 55.48 0.76 -24.55 16 24 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 C 0.12 1.84 5.03 -2.95 -0.01 1.82 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.07 0.63 3.13 -51.93 -0.16 0.47 16 33 H 0.06 0.48 7.91 -51.92 -0.41 0.07 16 34 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 35 H 0.07 1.14 7.48 -51.93 -0.39 0.75 16 36 H 0.07 0.90 7.66 -51.93 -0.40 0.51 16 37 H 0.37 2.40 8.96 45.56 0.41 2.81 16 38 H 0.09 1.17 6.99 -51.93 -0.36 0.81 16 39 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.08 0.81 5.23 -51.93 -0.27 0.54 16 41 H 0.11 1.47 4.50 -51.93 -0.23 1.24 16 42 H 0.16 2.12 1.97 -53.44 -0.11 2.01 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 45 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.09 1.67 6.72 -51.93 -0.35 1.32 16 48 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -35.59 359.04 -7.73 -43.32 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.58 Total: 9.85 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.07 Total: -14.28 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.37 Total: -35.08 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.84 Total: -24.83 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.59 -7.73 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297128487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds