Wall clock time and date at job start Tue Mar 31 2020 17:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.36595 * 2 1 4 4 C 1.50878 * 109.36524 * 240.37850 * 2 1 3 5 5 C 1.52571 * 109.35382 * 147.92481 * 4 2 1 6 6 H 1.09004 * 108.51031 * 323.76520 * 5 4 2 7 7 O 1.42894 * 108.51353 * 206.27165 * 5 4 2 8 8 C 1.47092 * 114.32767 * 85.01742 * 5 4 2 9 9 C 1.55417 * 110.34617 * 297.12152 * 8 5 4 10 10 N 1.44585 * 109.29442 * 71.28593 * 9 8 5 11 11 C 1.34774 * 118.64185 * 89.40796 * 10 9 8 12 12 O 1.21600 * 119.99662 * 186.32978 * 11 10 9 13 13 C 1.47527 * 120.00234 * 6.33121 * 11 10 9 14 14 C 1.39671 * 120.19772 * 333.27868 * 13 11 10 15 15 C 1.37832 * 119.92030 * 179.97438 * 14 13 11 16 16 C 1.38570 * 120.32311 * 0.02562 * 15 14 13 17 17 C 1.38031 * 120.40188 * 359.70428 * 16 15 14 18 18 C 1.38830 * 120.06985 * 0.55170 * 17 16 15 19 19 O 1.35522 * 120.15946 * 179.74586 * 18 17 16 20 20 C 1.34810 * 117.00004 * 5.38185 * 19 18 17 21 21 H 1.08001 * 120.00444 * 354.63441 * 20 19 18 22 22 C 1.38698 * 119.99977 * 174.90986 * 20 19 18 23 23 N 1.31520 * 120.00008 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00075 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46979 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47310 * 120.00051 * 24 22 20 27 27 H 1.48506 * 109.47314 * 240.00274 * 24 22 20 28 28 C 1.47605 * 122.71016 * 269.12922 * 10 9 8 29 29 H 1.08999 * 109.47091 * 300.26083 * 1 2 3 30 30 H 1.09007 * 109.46694 * 60.25767 * 1 2 3 31 31 H 1.08993 * 109.47054 * 180.25519 * 1 2 3 32 32 H 1.08998 * 109.46913 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46905 * 300.00394 * 3 2 1 34 34 H 1.09000 * 109.47719 * 60.00591 * 3 2 1 35 35 H 1.08998 * 109.49088 * 267.88965 * 4 2 1 36 36 H 1.08997 * 109.49145 * 27.95980 * 4 2 1 37 37 H 0.96702 * 114.00074 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.32810 * 57.45445 * 8 5 4 39 39 H 1.08996 * 109.32989 * 177.10810 * 8 5 4 40 40 H 1.08995 * 109.49928 * 311.40602 * 9 8 5 41 41 H 1.09002 * 109.71235 * 191.29603 * 9 8 5 42 42 H 1.08001 * 120.03898 * 0.02562 * 14 13 11 43 43 H 1.07997 * 119.83369 * 180.02562 * 15 14 13 44 44 H 1.08004 * 119.79994 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.96116 * 180.27693 * 17 16 15 46 46 H 0.97002 * 119.99931 * 179.97438 * 23 22 20 47 47 H 1.08996 * 108.94464 * 163.09769 * 28 10 9 48 48 H 1.09003 * 108.94602 * 281.80932 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0374 1.4434 0.0000 4 6 2.0303 -0.7035 -1.2374 5 6 3.3488 -0.0749 -1.6783 6 1 3.3017 0.9973 -1.4876 7 8 3.4986 -0.2747 -3.0852 8 6 4.5357 -0.6182 -1.0004 9 6 4.4658 -0.3303 0.5253 10 7 3.4427 -1.1599 1.1216 11 6 3.7846 -2.3827 1.5736 12 8 2.9259 -3.1451 1.9734 13 6 5.2008 -2.7961 1.5834 14 6 6.1017 -2.2386 0.6733 15 6 7.4236 -2.6287 0.6878 16 6 7.8645 -3.5727 1.6014 17 6 6.9868 -4.1282 2.5105 18 6 5.6506 -3.7513 2.5070 19 8 4.7863 -4.2993 3.3953 20 6 5.3069 -5.1209 4.3287 21 1 6.3536 -5.3847 4.2927 22 6 4.4972 -5.6319 5.3322 23 7 3.2213 -5.3153 5.3727 24 14 5.2184 -6.7709 6.6252 25 1 6.6657 -6.9694 6.3581 26 1 5.0421 -6.1672 7.9705 27 1 4.5211 -8.0811 6.5753 28 6 2.0405 -0.7205 1.2610 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5099 -0.8924 31 1 -0.3633 -1.0276 0.0046 32 1 3.1274 1.4454 -0.0005 33 1 1.6730 1.9566 -0.8900 34 1 1.6733 1.9566 0.8900 35 1 2.1866 -1.7596 -1.0172 36 1 1.2947 -0.6031 -2.0354 37 1 4.3137 0.0959 -3.4505 38 1 4.5831 -1.6949 -1.1635 39 1 5.4310 -0.1514 -1.4110 40 1 4.2214 0.7195 0.6866 41 1 5.4281 -0.5535 0.9860 42 1 5.7631 -1.5022 -0.0405 43 1 8.1191 -2.1964 -0.0163 44 1 8.9021 -3.8725 1.6051 45 1 7.3390 -4.8601 3.2223 46 1 2.6549 -5.6730 6.0743 47 1 1.4135 -1.5921 1.4489 48 1 1.9652 -0.0412 2.1102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297128487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:19 Heat of formation + Delta-G solvation = -56.449024 kcal Electronic energy + Delta-G solvation = -30630.812626 eV Core-core repulsion = 26652.762900 eV Total energy + Delta-G solvation = -3978.049726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.32518 -40.71081 -39.34451 -38.26297 -37.30383 -36.15324 -34.35285 -33.10364 -31.95056 -30.64949 -29.15734 -28.41797 -27.72522 -27.18258 -25.57887 -23.94592 -23.48896 -22.23325 -20.53606 -20.07289 -19.51303 -18.87248 -18.42343 -17.99504 -17.11311 -16.82026 -16.52526 -16.11245 -15.92863 -15.77561 -15.62826 -15.43553 -15.24940 -14.88086 -14.60015 -14.46615 -14.16139 -14.03454 -13.74093 -13.47849 -13.19446 -13.12874 -13.01971 -12.91512 -12.62841 -12.54216 -12.51889 -12.48046 -12.28541 -12.11910 -11.79635 -11.67989 -11.59121 -11.39644 -11.31788 -10.86529 -10.54463 -10.44777 -9.73916 -9.62190 -9.02836 -8.48290 -6.19281 0.14668 0.69784 1.30026 1.40808 1.50287 1.96235 2.07257 2.13563 2.81939 3.16153 3.26863 3.40314 3.50382 3.69899 3.73823 3.83052 3.86953 4.10814 4.14047 4.22788 4.24747 4.37777 4.40837 4.52236 4.56216 4.61797 4.63702 4.65305 4.70231 4.79336 4.83394 4.94266 4.97716 5.00331 5.06080 5.07641 5.14666 5.17562 5.21246 5.30416 5.33834 5.48209 5.51168 5.58593 5.68609 5.70994 5.93424 6.17140 6.45825 6.91742 7.02261 7.36916 7.77218 8.73265 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.003906 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.142139 B = 7167.519078 C = 8602.779472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.156 4.156 4 C -0.102 4.102 5 C 0.103 3.897 6 H 0.098 0.902 7 O -0.590 6.590 8 C -0.183 4.183 9 C 0.072 3.928 10 N -0.598 5.598 11 C 0.546 3.454 12 O -0.578 6.578 13 C -0.243 4.243 14 C -0.074 4.074 15 C -0.201 4.201 16 C -0.042 4.042 17 C -0.258 4.258 18 C 0.147 3.853 19 O -0.199 6.199 20 C -0.425 4.425 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.910 5.910 24 Si 1.024 2.976 25 H -0.245 1.245 26 H -0.266 1.266 27 H -0.270 1.270 28 C 0.119 3.881 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.057 0.943 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.198 0.802 43 H 0.168 0.832 44 H 0.154 0.846 45 H 0.122 0.878 46 H 0.271 0.729 47 H 0.049 0.951 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 17.568 -14.691 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.212 4.212 4 C -0.140 4.140 5 C 0.045 3.955 6 H 0.115 0.885 7 O -0.399 6.399 8 C -0.222 4.222 9 C -0.050 4.050 10 N -0.330 5.330 11 C 0.338 3.662 12 O -0.458 6.458 13 C -0.247 4.247 14 C -0.091 4.091 15 C -0.219 4.219 16 C -0.060 4.060 17 C -0.278 4.278 18 C 0.093 3.907 19 O -0.102 6.102 20 C -0.501 4.501 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.546 5.546 24 Si 0.842 3.158 25 H -0.168 1.168 26 H -0.191 1.191 27 H -0.195 1.195 28 C -0.003 4.003 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.244 0.756 38 H 0.075 0.925 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.214 0.786 43 H 0.185 0.815 44 H 0.172 0.828 45 H 0.139 0.861 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.684 16.883 -14.245 22.581 hybrid contribution 0.121 -1.238 1.134 1.683 sum 4.805 15.645 -13.111 20.970 Atomic orbital electron populations 1.21883 0.92744 1.01583 1.03364 1.20507 0.96716 0.96772 0.92260 1.22412 1.02425 0.92942 1.03410 1.21056 0.97448 0.98470 0.96976 1.20970 0.93044 1.00974 0.80490 0.88480 1.86557 1.47410 1.83497 1.22447 1.22353 1.01419 1.02672 0.95709 1.22885 0.92872 0.96833 0.92378 1.47453 1.09930 1.15133 1.60516 1.18758 0.88781 0.82015 0.76684 1.90830 1.52511 1.53924 1.48567 1.19239 0.94346 1.05791 1.05339 1.22911 0.93038 0.97146 0.96044 1.21280 0.95987 1.01888 1.02778 1.21465 0.99518 0.93373 0.91660 1.21279 0.92792 1.07648 1.06039 1.20080 0.90389 0.90533 0.89747 1.84120 1.34184 1.54592 1.37353 1.22061 0.97024 1.25299 1.05736 0.87591 1.26783 0.95509 0.99769 1.00164 1.70315 1.06561 1.43949 1.33814 0.84480 0.78993 0.76363 0.75945 1.16802 1.19132 1.19490 1.21969 0.81319 0.98690 0.98334 0.91403 0.90100 0.94246 0.89964 0.90182 0.91604 0.95304 0.90552 0.75615 0.92492 0.85160 0.86542 0.87430 0.78630 0.81455 0.82849 0.86052 0.92000 0.93263 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.16 71.98 0.59 -2.20 16 2 C -0.06 -1.34 0.75 -52.55 -0.04 -1.38 16 3 C -0.16 -2.18 6.75 71.98 0.49 -1.70 16 4 C -0.10 -2.45 4.55 29.76 0.14 -2.32 16 5 C 0.10 1.78 2.72 28.61 0.08 1.86 16 6 H 0.10 1.15 4.65 -2.39 -0.01 1.13 16 7 O -0.59 -10.31 13.19 -148.98 -1.96 -12.28 16 8 C -0.18 -3.16 3.47 29.59 0.10 -3.06 16 9 C 0.07 1.57 4.84 87.57 0.42 2.00 16 10 N -0.60 -20.35 2.23 -820.79 -1.83 -22.18 16 11 C 0.55 26.20 7.37 86.69 0.64 26.84 16 12 O -0.58 -35.52 14.91 14.92 0.22 -35.30 16 13 C -0.24 -10.98 5.60 -19.99 -0.11 -11.09 16 14 C -0.07 -2.32 6.98 22.52 0.16 -2.16 16 15 C -0.20 -5.39 10.03 22.25 0.22 -5.17 16 16 C -0.04 -1.33 10.03 22.30 0.22 -1.11 16 17 C -0.26 -11.33 9.16 22.36 0.20 -11.13 16 18 C 0.15 7.82 6.63 22.91 0.15 7.97 16 19 O -0.20 -13.04 8.18 -1.09 -0.01 -13.05 16 20 C -0.43 -26.29 9.49 67.93 0.64 -25.65 16 21 H 0.11 5.89 5.21 -2.91 -0.02 5.88 16 22 C -0.02 -1.43 5.49 84.85 0.47 -0.96 16 23 N -0.91 -60.51 13.67 21.62 0.30 -60.21 16 24 Si 1.02 44.99 29.55 68.60 2.03 47.02 16 25 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 C 0.12 3.77 5.03 86.49 0.43 4.20 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.29 8.08 -2.38 -0.02 1.27 16 31 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 32 H 0.08 0.97 3.13 -2.39 -0.01 0.96 16 33 H 0.08 0.87 7.91 -2.38 -0.02 0.85 16 34 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 35 H 0.03 0.94 7.48 -2.39 -0.02 0.92 16 36 H 0.08 1.79 7.66 -2.39 -0.02 1.77 16 37 H 0.39 2.90 8.96 -74.06 -0.66 2.23 16 38 H 0.06 1.39 6.99 -2.39 -0.02 1.37 16 39 H 0.13 1.02 8.05 -2.39 -0.02 1.00 16 40 H 0.12 1.77 5.23 -2.39 -0.01 1.76 16 41 H 0.11 2.46 4.50 -2.39 -0.01 2.45 16 42 H 0.20 4.45 1.97 -3.81 -0.01 4.44 16 43 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 46 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 47 H 0.05 2.00 6.72 -2.39 -0.02 1.98 16 48 H 0.07 1.99 7.97 -2.39 -0.02 1.97 16 Total: -1.00 -94.86 359.04 3.91 -90.96 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.36 Total: 30.10 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 4.81 Total: -25.07 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.53 Total: -82.39 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -1.75 Total: -60.62 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -94.86 3.91 -90.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297128487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.509 kcal (2) G-P(sol) polarization free energy of solvation -94.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds