Wall clock time and date at job start Tue Mar 31 2020 18:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 116.99990 * 2 1 4 4 C 1.38750 * 120.05925 * 0.25629 * 3 2 1 5 5 C 1.38114 * 119.94414 * 180.27807 * 4 3 2 6 6 C 1.38286 * 120.05909 * 359.72080 * 5 4 3 7 7 C 1.38240 * 120.10888 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05848 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.02813 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46940 * 264.99416 * 9 8 7 11 11 C 1.52999 * 109.46932 * 60.00314 * 10 9 8 12 12 C 1.52997 * 109.46911 * 299.99998 * 10 9 8 13 13 C 1.50700 * 109.47189 * 180.02562 * 10 9 8 14 14 O 1.21286 * 119.99788 * 354.44454 * 13 10 9 15 15 N 1.34771 * 120.00105 * 174.45382 * 13 10 9 16 16 C 1.47584 * 134.49224 * 355.24531 * 15 13 10 17 17 C 1.53941 * 86.11984 * 155.36523 * 16 15 13 18 18 O 1.42905 * 113.73532 * 269.15349 * 17 16 15 19 19 C 1.50699 * 113.74851 * 137.95322 * 17 16 15 20 20 H 1.07998 * 119.99240 * 359.97438 * 19 17 16 21 21 C 1.37871 * 120.00449 * 179.97438 * 19 17 16 22 22 N 1.31510 * 120.00121 * 179.97438 * 21 19 17 23 23 Si 1.86800 * 119.99913 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.47193 * 270.00293 * 23 21 19 25 25 H 1.48506 * 109.47372 * 29.99787 * 23 21 19 26 26 H 1.48499 * 109.47477 * 149.99877 * 23 21 19 27 27 C 1.47588 * 134.49623 * 175.24835 * 15 13 10 28 28 H 1.09004 * 109.46818 * 299.99559 * 1 2 3 29 29 H 1.08996 * 109.47487 * 59.99563 * 1 2 3 30 30 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02321 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97131 * 179.74663 * 5 4 3 33 33 H 1.08005 * 119.94325 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.97144 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47372 * 144.99852 * 9 8 7 36 36 H 1.09002 * 109.47360 * 24.99200 * 9 8 7 37 37 H 1.09006 * 109.47067 * 177.50739 * 11 10 9 38 38 H 1.09000 * 109.46958 * 297.49771 * 11 10 9 39 39 H 1.08994 * 109.47642 * 57.50628 * 11 10 9 40 40 H 1.08993 * 109.47565 * 304.23407 * 12 10 9 41 41 H 1.09003 * 109.47011 * 64.23568 * 12 10 9 42 42 H 1.09002 * 109.47205 * 184.22913 * 12 10 9 43 43 H 1.08993 * 113.77000 * 41.05839 * 16 15 13 44 44 H 1.09002 * 113.86886 * 269.67672 * 16 15 13 45 45 H 0.96703 * 113.99976 * 178.07432 * 18 17 16 46 46 H 0.97005 * 119.99606 * 179.97438 * 22 21 19 47 47 H 1.08992 * 113.76806 * 90.32995 * 27 15 13 48 48 H 1.08997 * 113.76239 * 318.93496 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3753 0.0054 5 6 1.9209 3.6047 -0.0004 6 6 3.3019 3.6757 -0.0058 7 6 4.0559 2.5171 -0.0059 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0007 10 6 4.4201 -0.4773 -1.4373 11 6 5.1280 0.5929 -2.2705 12 6 3.0435 -0.7651 -2.0398 13 6 5.2422 -1.7404 -1.4380 14 8 5.7389 -2.1411 -0.4066 15 7 5.4256 -2.4244 -2.5846 16 6 4.9162 -2.2883 -3.9630 17 6 6.1879 -3.0401 -4.3958 18 8 7.2895 -2.1811 -4.6971 19 6 5.9458 -4.0800 -5.4593 20 1 4.9488 -4.2377 -5.8431 21 6 6.9971 -4.8299 -5.9422 22 7 6.7858 -5.7377 -6.8699 23 14 8.7218 -4.5565 -5.2787 24 1 9.4083 -3.5233 -6.0952 25 1 8.6429 -4.1003 -3.8677 26 1 9.4854 -5.8283 -5.3457 27 6 6.2166 -3.6106 -2.9662 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2129 2.3204 0.0100 32 1 1.3340 4.5114 -0.0004 33 1 3.7922 4.6381 -0.0099 34 1 5.1344 2.5751 -0.0104 35 1 3.7494 -0.7404 0.5929 36 1 5.2344 0.2272 0.4286 37 1 5.2862 0.2199 -3.2825 38 1 4.5120 1.4915 -2.3068 39 1 6.0900 0.8299 -1.8162 40 1 2.5093 -1.4716 -1.4046 41 1 2.4758 0.1629 -2.1086 42 1 3.1647 -1.1915 -3.0356 43 1 4.8734 -1.2579 -4.3158 44 1 3.9948 -2.8401 -4.1492 45 1 8.0990 -2.6504 -4.9410 46 1 7.5256 -6.2651 -7.2099 47 1 5.6775 -4.5516 -2.8578 48 1 7.2122 -3.6357 -2.5232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332483712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:08 Heat of formation + Delta-G solvation = -48.995516 kcal Electronic energy + Delta-G solvation = -30043.954723 eV Core-core repulsion = 26066.228206 eV Total energy + Delta-G solvation = -3977.726517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.79437 -39.85429 -38.04922 -37.47087 -35.49752 -34.47871 -32.53521 -31.57452 -30.28233 -28.73617 -27.68342 -27.10374 -26.57889 -25.58726 -25.37728 -22.70746 -22.20678 -21.00745 -19.67002 -18.32460 -17.93897 -17.39001 -16.45317 -16.33880 -16.18100 -16.12077 -15.61425 -15.40297 -14.89459 -14.59224 -14.13224 -13.78918 -13.72558 -13.56874 -13.43720 -13.14359 -12.88289 -12.83381 -12.59789 -12.29615 -12.18087 -12.16115 -11.98486 -11.76611 -11.71770 -11.33264 -11.15857 -11.08355 -11.02732 -10.87245 -10.76283 -10.65539 -10.51071 -10.09615 -9.66625 -9.15447 -8.98321 -8.87799 -8.64744 -8.23705 -7.96374 -6.41474 -4.47244 1.16840 1.30068 3.01161 3.07809 3.14616 3.16658 3.17914 3.42697 3.64863 4.05321 4.54420 4.65466 4.66282 4.73283 4.89788 4.91505 4.95051 5.01525 5.08817 5.14661 5.23770 5.27107 5.31841 5.41399 5.52222 5.62628 5.73006 5.78611 5.82274 5.92459 5.96192 6.04029 6.06702 6.15426 6.18338 6.22521 6.28650 6.31674 6.35899 6.40923 6.46868 6.52407 6.62818 6.64891 6.66284 7.21367 7.25910 8.02279 8.36344 8.51935 8.61128 8.71483 9.16825 10.70680 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003043 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.254218 B = 9199.524369 C = 9565.221509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.133 3.867 4 C -0.210 4.210 5 C -0.088 4.088 6 C -0.157 4.157 7 C -0.078 4.078 8 C -0.102 4.102 9 C -0.048 4.048 10 C -0.066 4.066 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.541 3.459 14 O -0.561 6.561 15 N -0.630 5.630 16 C 0.119 3.881 17 C 0.195 3.805 18 O -0.554 6.554 19 C -0.536 4.536 20 H 0.091 0.909 21 C 0.081 3.919 22 N -0.877 5.877 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.255 1.255 26 H -0.283 1.283 27 C 0.072 3.928 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.352 0.648 46 H 0.271 0.729 47 H 0.090 0.910 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.926 15.941 11.484 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.087 3.913 4 C -0.229 4.229 5 C -0.107 4.107 6 C -0.176 4.176 7 C -0.096 4.096 8 C -0.102 4.102 9 C -0.085 4.085 10 C -0.069 4.069 11 C -0.199 4.199 12 C -0.195 4.195 13 C 0.331 3.669 14 O -0.441 6.441 15 N -0.363 5.363 16 C -0.004 4.004 17 C 0.154 3.846 18 O -0.365 6.365 19 C -0.574 4.574 20 H 0.109 0.891 21 C -0.124 4.124 22 N -0.512 5.512 23 Si 0.685 3.315 24 H -0.193 1.193 25 H -0.180 1.180 26 H -0.210 1.210 27 C -0.051 4.051 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.204 0.796 46 H 0.081 0.919 47 H 0.109 0.891 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.967 15.924 12.211 22.868 hybrid contribution 1.019 -0.251 0.111 1.056 sum -9.947 15.674 12.322 22.281 Atomic orbital electron populations 1.23044 0.78918 1.03969 1.01052 1.86229 1.20819 1.26468 1.88348 1.18822 0.91792 0.84290 0.96362 1.21194 0.99854 0.92419 1.09390 1.20880 0.94686 0.96825 0.98262 1.21026 0.93899 0.98317 1.04323 1.20962 1.00036 0.90991 0.97565 1.19268 0.90534 0.95911 1.04524 1.20274 0.99391 0.93736 0.95121 1.20606 0.96220 0.93406 0.96710 1.21920 1.00055 0.97646 1.00243 1.21993 0.94316 1.02241 1.00934 1.20096 0.80386 0.84741 0.81698 1.90628 1.51803 1.70399 1.31230 1.50030 1.47470 1.30028 1.08789 1.23414 0.97938 1.00947 0.78056 1.20569 0.84464 0.88478 0.91099 1.86434 1.21999 1.37583 1.90478 1.21225 0.97716 1.17565 1.20889 0.89091 1.24985 0.98907 0.94426 0.94121 1.69853 1.32597 1.21873 1.26921 0.87363 0.85279 0.78313 0.80548 1.19296 1.18035 1.21000 1.24514 0.95231 0.88984 0.96364 0.92946 0.92715 0.88258 0.85695 0.86143 0.86067 0.85390 0.90150 0.90470 0.91361 0.91696 0.92434 0.91645 0.92091 0.91999 0.90416 0.88727 0.79562 0.91908 0.89147 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.46 6.97 -19.44 -0.14 -3.60 16 3 C 0.13 1.52 5.25 -39.22 -0.21 1.32 16 4 C -0.21 -2.02 9.04 -39.44 -0.36 -2.38 16 5 C -0.09 -0.79 10.04 -39.61 -0.40 -1.19 16 6 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 7 C -0.08 -0.83 8.35 -39.61 -0.33 -1.16 16 8 C -0.10 -1.24 4.02 -104.48 -0.42 -1.67 16 9 C -0.05 -0.68 3.57 -27.88 -0.10 -0.78 16 10 C -0.07 -1.02 0.57 -155.66 -0.09 -1.11 16 11 C -0.14 -2.00 7.83 37.16 0.29 -1.71 16 12 C -0.14 -1.91 6.78 37.16 0.25 -1.66 16 13 C 0.54 10.62 6.71 -10.99 -0.07 10.55 16 14 O -0.56 -12.71 16.72 5.55 0.09 -12.62 16 15 N -0.63 -12.67 3.54 -178.30 -0.63 -13.30 16 16 C 0.12 2.27 5.49 -2.98 -0.02 2.25 16 17 C 0.19 4.40 1.06 -90.85 -0.10 4.31 16 18 O -0.55 -12.88 13.32 -35.23 -0.47 -13.35 16 19 C -0.54 -13.76 9.20 -34.44 -0.32 -14.07 16 20 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.88 -24.62 13.96 55.43 0.77 -23.84 16 23 Si 0.86 19.36 24.34 -169.99 -4.14 15.22 16 24 H -0.27 -5.82 7.06 56.52 0.40 -5.42 16 25 H -0.26 -5.59 5.28 56.52 0.30 -5.29 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.07 1.56 7.43 -2.97 -0.02 1.54 16 28 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 29 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 36 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 37 H 0.07 1.04 5.87 -51.93 -0.30 0.73 16 38 H 0.06 0.81 6.58 -51.93 -0.34 0.46 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.94 7.14 -51.93 -0.37 0.56 16 41 H 0.06 0.78 6.04 -51.93 -0.31 0.47 16 42 H 0.06 0.87 5.27 -51.93 -0.27 0.59 16 43 H 0.08 1.37 6.06 -51.93 -0.31 1.05 16 44 H 0.09 1.68 7.94 -51.93 -0.41 1.26 16 45 H 0.35 7.98 3.31 45.56 0.15 8.13 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.09 1.92 8.09 -51.93 -0.42 1.50 16 48 H 0.07 1.50 6.99 -51.93 -0.36 1.14 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -31.04 366.35 -7.05 -38.09 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.68 Total: 12.29 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.38 Total: -4.41 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.14 Total: -37.14 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.51 Total: -29.56 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.14 Total: 15.22 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.04 -7.05 -38.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332483712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.910 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds