Wall clock time and date at job start Tue Mar 31 2020 18:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 116.99990 * 2 1 4 4 C 1.38750 * 120.05925 * 0.25629 * 3 2 1 5 5 C 1.38114 * 119.94414 * 180.27807 * 4 3 2 6 6 C 1.38286 * 120.05909 * 359.72080 * 5 4 3 7 7 C 1.38240 * 120.10888 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05848 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.02813 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46940 * 264.99416 * 9 8 7 11 11 C 1.52999 * 109.46932 * 60.00314 * 10 9 8 12 12 C 1.52997 * 109.46911 * 299.99998 * 10 9 8 13 13 C 1.50700 * 109.47189 * 180.02562 * 10 9 8 14 14 O 1.21286 * 119.99788 * 354.44454 * 13 10 9 15 15 N 1.34771 * 120.00105 * 174.45382 * 13 10 9 16 16 C 1.47584 * 134.49224 * 355.24531 * 15 13 10 17 17 C 1.53941 * 86.11984 * 155.36523 * 16 15 13 18 18 O 1.42905 * 113.73532 * 269.15349 * 17 16 15 19 19 C 1.50699 * 113.74851 * 137.95322 * 17 16 15 20 20 H 1.07998 * 119.99240 * 359.97438 * 19 17 16 21 21 C 1.37871 * 120.00449 * 179.97438 * 19 17 16 22 22 N 1.31510 * 120.00121 * 179.97438 * 21 19 17 23 23 Si 1.86800 * 119.99913 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.47193 * 270.00293 * 23 21 19 25 25 H 1.48506 * 109.47372 * 29.99787 * 23 21 19 26 26 H 1.48499 * 109.47477 * 149.99877 * 23 21 19 27 27 C 1.47588 * 134.49623 * 175.24835 * 15 13 10 28 28 H 1.09004 * 109.46818 * 299.99559 * 1 2 3 29 29 H 1.08996 * 109.47487 * 59.99563 * 1 2 3 30 30 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02321 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97131 * 179.74663 * 5 4 3 33 33 H 1.08005 * 119.94325 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.97144 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47372 * 144.99852 * 9 8 7 36 36 H 1.09002 * 109.47360 * 24.99200 * 9 8 7 37 37 H 1.09006 * 109.47067 * 177.50739 * 11 10 9 38 38 H 1.09000 * 109.46958 * 297.49771 * 11 10 9 39 39 H 1.08994 * 109.47642 * 57.50628 * 11 10 9 40 40 H 1.08993 * 109.47565 * 304.23407 * 12 10 9 41 41 H 1.09003 * 109.47011 * 64.23568 * 12 10 9 42 42 H 1.09002 * 109.47205 * 184.22913 * 12 10 9 43 43 H 1.08993 * 113.77000 * 41.05839 * 16 15 13 44 44 H 1.09002 * 113.86886 * 269.67672 * 16 15 13 45 45 H 0.96703 * 113.99976 * 178.07432 * 18 17 16 46 46 H 0.97005 * 119.99606 * 179.97438 * 22 21 19 47 47 H 1.08992 * 113.76806 * 90.32995 * 27 15 13 48 48 H 1.08997 * 113.76239 * 318.93496 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3753 0.0054 5 6 1.9209 3.6047 -0.0004 6 6 3.3019 3.6757 -0.0058 7 6 4.0559 2.5171 -0.0059 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0007 10 6 4.4201 -0.4773 -1.4373 11 6 5.1280 0.5929 -2.2705 12 6 3.0435 -0.7651 -2.0398 13 6 5.2422 -1.7404 -1.4380 14 8 5.7389 -2.1411 -0.4066 15 7 5.4256 -2.4244 -2.5846 16 6 4.9162 -2.2883 -3.9630 17 6 6.1879 -3.0401 -4.3958 18 8 7.2895 -2.1811 -4.6971 19 6 5.9458 -4.0800 -5.4593 20 1 4.9488 -4.2377 -5.8431 21 6 6.9971 -4.8299 -5.9422 22 7 6.7858 -5.7377 -6.8699 23 14 8.7218 -4.5565 -5.2787 24 1 9.4083 -3.5233 -6.0952 25 1 8.6429 -4.1003 -3.8677 26 1 9.4854 -5.8283 -5.3457 27 6 6.2166 -3.6106 -2.9662 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2129 2.3204 0.0100 32 1 1.3340 4.5114 -0.0004 33 1 3.7922 4.6381 -0.0099 34 1 5.1344 2.5751 -0.0104 35 1 3.7494 -0.7404 0.5929 36 1 5.2344 0.2272 0.4286 37 1 5.2862 0.2199 -3.2825 38 1 4.5120 1.4915 -2.3068 39 1 6.0900 0.8299 -1.8162 40 1 2.5093 -1.4716 -1.4046 41 1 2.4758 0.1629 -2.1086 42 1 3.1647 -1.1915 -3.0356 43 1 4.8734 -1.2579 -4.3158 44 1 3.9948 -2.8401 -4.1492 45 1 8.0990 -2.6504 -4.9410 46 1 7.5256 -6.2651 -7.2099 47 1 5.6775 -4.5516 -2.8578 48 1 7.2122 -3.6357 -2.5232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332483712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:07 Heat of formation + Delta-G solvation = -69.808786 kcal Electronic energy + Delta-G solvation = -30044.857254 eV Core-core repulsion = 26066.228206 eV Total energy + Delta-G solvation = -3978.629048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93102 -41.12281 -39.56684 -38.30937 -36.75583 -36.25239 -34.55637 -32.52529 -31.00878 -30.41739 -28.49977 -28.13202 -27.61266 -27.35312 -27.02189 -23.89132 -22.92671 -22.25090 -21.21632 -19.85039 -19.23112 -18.72497 -18.18871 -17.72726 -17.25941 -17.12899 -16.62825 -16.45087 -16.32377 -15.60950 -15.40756 -15.29480 -15.17833 -14.83801 -14.63615 -14.58021 -14.41603 -14.05526 -13.77625 -13.65317 -13.50638 -13.22717 -12.98831 -12.86425 -12.80825 -12.68495 -12.58954 -12.50934 -12.25388 -12.09188 -11.93340 -11.83008 -11.79137 -11.61050 -11.36156 -11.07611 -10.67592 -10.41849 -9.72429 -9.65096 -9.00829 -8.45129 -6.55145 0.41126 0.56131 1.19998 1.27220 1.34901 1.61138 1.88691 2.14240 2.48207 2.75842 2.85580 3.17864 3.41449 3.79794 3.81148 3.86400 3.95213 4.04202 4.18745 4.24707 4.34749 4.35723 4.42534 4.44847 4.47886 4.54131 4.54392 4.63553 4.71934 4.73109 4.75021 4.79051 4.82357 4.87891 4.88393 4.94293 5.01723 5.08780 5.18870 5.27190 5.31859 5.33773 5.46971 5.59096 5.67942 5.94594 6.01370 6.52660 6.55229 6.63433 6.79546 7.11683 7.13127 8.70067 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003043 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.254218 B = 9199.524369 C = 9565.221509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.121 3.879 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.159 4.159 7 C -0.084 4.084 8 C -0.123 4.123 9 C -0.037 4.037 10 C -0.059 4.059 11 C -0.134 4.134 12 C -0.127 4.127 13 C 0.535 3.465 14 O -0.596 6.596 15 N -0.630 5.630 16 C 0.131 3.869 17 C 0.186 3.814 18 O -0.556 6.556 19 C -0.538 4.538 20 H 0.066 0.934 21 C 0.032 3.968 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.250 1.250 25 H -0.247 1.247 26 H -0.284 1.284 27 C 0.068 3.932 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.353 0.647 46 H 0.273 0.727 47 H 0.091 0.909 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 18.809 12.033 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.076 3.924 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.177 4.177 7 C -0.102 4.102 8 C -0.124 4.124 9 C -0.075 4.075 10 C -0.062 4.062 11 C -0.191 4.191 12 C -0.184 4.184 13 C 0.326 3.674 14 O -0.478 6.478 15 N -0.363 5.363 16 C 0.010 3.990 17 C 0.145 3.855 18 O -0.367 6.367 19 C -0.576 4.576 20 H 0.084 0.916 21 C -0.169 4.169 22 N -0.558 5.558 23 Si 0.736 3.264 24 H -0.175 1.175 25 H -0.172 1.172 26 H -0.210 1.210 27 C -0.055 4.055 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.206 0.794 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.931 18.817 12.756 25.674 hybrid contribution 1.209 -1.133 -0.025 1.657 sum -10.722 17.684 12.731 24.285 Atomic orbital electron populations 1.23273 0.77178 1.04992 1.02221 1.86194 1.22754 1.26868 1.88441 1.18971 0.91697 0.85020 0.96730 1.21474 1.00942 0.91979 1.08660 1.21277 0.94834 0.97639 0.96557 1.21319 0.94279 0.98683 1.03468 1.21096 1.00550 0.91006 0.97585 1.19140 0.90906 0.95214 1.07131 1.20078 0.98987 0.94535 0.93888 1.20634 0.96209 0.91385 0.98006 1.21872 1.00204 0.97884 0.99142 1.21910 0.93361 1.02818 1.00354 1.20962 0.80047 0.85582 0.80765 1.90604 1.53315 1.71474 1.32419 1.50037 1.47314 1.29464 1.09468 1.23423 0.96709 1.01943 0.76952 1.20618 0.85936 0.88630 0.90299 1.86432 1.22170 1.37624 1.90523 1.21386 0.96723 1.18203 1.21332 0.91577 1.25706 1.02792 0.94130 0.94318 1.69973 1.33916 1.23270 1.28665 0.86459 0.80787 0.78585 0.80525 1.17508 1.17195 1.21047 1.24378 0.95273 0.89883 0.95954 0.91710 0.91502 0.87474 0.83623 0.83385 0.83861 0.84949 0.92302 0.91678 0.92218 0.89513 0.92760 0.92370 0.90542 0.92101 0.88361 0.87326 0.79405 0.91744 0.89120 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.04 6.97 -92.46 -0.64 -7.69 16 3 C 0.12 2.56 5.25 22.51 0.12 2.68 16 4 C -0.21 -3.43 9.04 22.36 0.20 -3.23 16 5 C -0.09 -1.21 10.04 22.25 0.22 -0.98 16 6 C -0.16 -2.47 10.04 22.28 0.22 -2.24 16 7 C -0.08 -1.64 8.35 22.25 0.19 -1.46 16 8 C -0.12 -2.86 4.02 -19.77 -0.08 -2.94 16 9 C -0.04 -1.06 3.57 29.85 0.11 -0.96 16 10 C -0.06 -1.78 0.57 -52.93 -0.03 -1.81 16 11 C -0.13 -3.56 7.83 71.98 0.56 -3.00 16 12 C -0.13 -3.37 6.78 71.98 0.49 -2.88 16 13 C 0.53 20.93 6.71 87.66 0.59 21.52 16 14 O -0.60 -27.45 16.72 -3.05 -0.05 -27.50 16 15 N -0.63 -25.01 3.54 -840.23 -2.97 -27.98 16 16 C 0.13 4.86 5.49 86.48 0.47 5.33 16 17 C 0.19 8.30 1.06 -10.88 -0.01 8.29 16 18 O -0.56 -25.12 13.32 -148.98 -1.98 -27.11 16 19 C -0.54 -27.87 9.20 25.60 0.24 -27.63 16 20 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 21 C 0.03 1.70 5.47 84.65 0.46 2.16 16 22 N -0.92 -52.64 13.96 21.44 0.30 -52.34 16 23 Si 0.91 39.78 24.34 68.60 1.67 41.45 16 24 H -0.25 -10.20 7.06 99.48 0.70 -9.50 16 25 H -0.25 -10.40 5.28 99.48 0.53 -9.87 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.07 2.98 7.43 86.48 0.64 3.63 16 28 H 0.06 0.66 7.65 -2.39 -0.02 0.64 16 29 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 32 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.06 1.90 7.70 -2.39 -0.02 1.88 16 36 H 0.06 1.96 7.95 -2.39 -0.02 1.94 16 37 H 0.06 1.69 5.87 -2.38 -0.01 1.68 16 38 H 0.09 1.94 6.58 -2.39 -0.02 1.92 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.62 7.14 -2.39 -0.02 1.61 16 41 H 0.08 1.80 6.04 -2.39 -0.01 1.79 16 42 H 0.06 1.60 5.27 -2.39 -0.01 1.59 16 43 H 0.10 3.25 6.06 -2.39 -0.01 3.24 16 44 H 0.11 3.72 7.94 -2.39 -0.02 3.70 16 45 H 0.35 15.44 3.31 -74.05 -0.24 15.19 16 46 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 47 H 0.09 3.90 8.09 -2.39 -0.02 3.88 16 48 H 0.06 2.60 6.99 -2.39 -0.02 2.58 16 Total: -1.00 -67.65 366.35 2.38 -65.27 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.55 Total: 38.06 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.51 Total: -2.17 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.67 Total: -80.32 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -2.68 Total: -62.29 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.67 Total: 41.45 kcal Total: -67.65 2.38 -65.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332483712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.539 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds