Wall clock time and date at job start Tue Mar 31 2020 19:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99698 * 2 1 4 4 O 1.20827 * 120.00482 * 5.10785 * 3 2 1 5 5 C 1.50705 * 119.99794 * 185.10226 * 3 2 1 6 6 H 1.08998 * 109.47000 * 53.83832 * 5 3 2 7 7 C 1.53002 * 109.47213 * 173.83982 * 5 3 2 8 8 N 1.46490 * 109.47376 * 189.10024 * 7 5 3 9 9 C 1.34780 * 120.00362 * 187.75639 * 8 7 5 10 10 O 1.21578 * 119.99618 * 359.97438 * 9 8 7 11 11 C 1.47639 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.40014 * 119.89679 * 359.72483 * 11 9 8 13 13 C 1.36318 * 120.10664 * 179.71916 * 12 11 9 14 14 C 1.40890 * 119.88932 * 0.57194 * 13 12 11 15 15 C 1.41109 * 120.10326 * 179.67548 * 14 13 12 16 16 H 1.08003 * 120.00190 * 213.06745 * 15 14 13 17 17 C 1.40225 * 120.00110 * 33.05927 * 15 14 13 18 18 N 1.30644 * 119.99755 * 6.58841 * 17 15 14 19 19 Si 1.86797 * 120.00283 * 186.58630 * 17 15 14 20 20 H 1.48503 * 109.47338 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47384 * 120.00229 * 19 17 15 22 22 H 1.48497 * 109.47077 * 240.00281 * 19 17 15 23 23 C 1.40884 * 119.79566 * 359.70448 * 14 13 12 24 24 C 1.36320 * 119.88958 * 359.97438 * 23 14 13 25 25 C 1.53002 * 109.46900 * 293.83874 * 5 3 2 26 26 C 1.52999 * 109.46768 * 172.67099 * 25 5 3 27 27 C 1.53000 * 109.47351 * 297.72728 * 26 25 5 28 28 C 1.53002 * 109.47353 * 177.72955 * 26 25 5 29 29 H 1.09002 * 109.47187 * 299.99681 * 1 2 3 30 30 H 1.09005 * 109.46985 * 59.99666 * 1 2 3 31 31 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46779 * 309.10207 * 7 5 3 33 33 H 1.08997 * 109.47059 * 69.09452 * 7 5 3 34 34 H 0.97012 * 120.00004 * 7.75439 * 8 7 5 35 35 H 1.07994 * 119.94647 * 0.02562 * 12 11 9 36 36 H 1.07997 * 120.05755 * 180.25703 * 13 12 11 37 37 H 0.97000 * 120.00117 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.05980 * 179.97438 * 23 14 13 39 39 H 1.08004 * 119.94198 * 180.02562 * 24 23 14 40 40 H 1.08994 * 109.47028 * 52.67125 * 25 5 3 41 41 H 1.09000 * 109.47071 * 292.66914 * 25 5 3 42 42 H 1.09001 * 109.47243 * 57.72743 * 26 25 5 43 43 H 1.09007 * 109.47028 * 55.21554 * 27 26 25 44 44 H 1.08999 * 109.47778 * 175.21445 * 27 26 25 45 45 H 1.09002 * 109.47257 * 295.21646 * 27 26 25 46 46 H 1.08995 * 109.47568 * 180.02562 * 28 26 25 47 47 H 1.09003 * 109.47024 * 300.00034 * 28 26 25 48 48 H 1.09001 * 109.47119 * 59.99712 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4070 2.2075 0.0932 5 6 3.5617 1.2772 -0.1161 6 1 3.8883 0.7253 -0.9974 7 6 3.9846 2.7419 -0.2458 8 7 5.4104 2.8112 -0.5751 9 6 6.0427 4.0014 -0.5851 10 8 5.4296 5.0176 -0.3214 11 6 7.4795 4.0712 -0.9176 12 6 8.1844 2.8990 -1.2164 13 6 9.5098 2.9591 -1.5295 14 6 10.1730 4.2021 -1.5403 15 6 11.5464 4.2688 -1.8571 16 1 12.1729 5.0142 -1.3898 17 6 12.0981 3.3670 -2.7785 18 7 11.3207 2.5510 -3.4393 19 14 13.9442 3.3326 -3.0611 20 1 14.5965 4.3478 -2.1955 21 1 14.4712 1.9853 -2.7263 22 1 14.2327 3.6371 -4.4856 23 6 9.4608 5.3783 -1.2333 24 6 8.1341 5.3089 -0.9278 25 6 4.2034 0.6698 1.1330 26 6 5.7186 0.5850 0.9379 27 6 6.0302 -0.3410 -0.2395 28 6 6.3662 0.0302 2.2083 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.4055 3.2186 -1.0366 33 1 3.8041 3.2571 0.6976 34 1 5.8995 2.0004 -0.7859 35 1 7.6762 1.9462 -1.2036 36 1 10.0518 2.0549 -1.7639 37 1 11.7022 1.9275 -4.0769 38 1 9.9650 6.3333 -1.2399 39 1 7.5872 6.2100 -0.6927 40 1 3.8019 -0.3299 1.2981 41 1 3.9828 1.2972 1.9965 42 1 6.1147 1.5795 0.7327 43 1 5.4997 0.0071 -1.1259 44 1 7.1030 -0.3351 -0.4325 45 1 5.7100 -1.3548 0.0009 46 1 7.4456 -0.0297 2.0695 47 1 6.1442 0.6900 3.0471 48 1 5.9700 -0.9643 2.4135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340213209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:05 Heat of formation + Delta-G solvation = -117.679180 kcal Electronic energy + Delta-G solvation = -28958.269791 eV Core-core repulsion = 24977.564927 eV Total energy + Delta-G solvation = -3980.704864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.96408 -39.43612 -37.76688 -36.92883 -36.64697 -33.92175 -33.81030 -32.08174 -30.09449 -29.49047 -28.03136 -27.29734 -26.63135 -25.50465 -23.82964 -21.86399 -21.01168 -20.57877 -20.45131 -19.34306 -17.82613 -17.52549 -17.10558 -16.88732 -16.37537 -15.75382 -15.50918 -15.09082 -14.43888 -14.29765 -14.06825 -13.84559 -13.70601 -13.58217 -13.38712 -13.17652 -12.99232 -12.72077 -12.46170 -12.26088 -12.17772 -12.00382 -11.86515 -11.75018 -11.48220 -11.39074 -11.28427 -11.13100 -11.06328 -10.93958 -10.80935 -10.62689 -10.58307 -10.39563 -9.98568 -9.55361 -9.46968 -9.03733 -8.53778 -7.75273 -7.47235 -6.94908 -4.62914 1.95670 2.17625 2.37160 2.91743 2.96435 2.98806 3.01887 3.76579 3.78605 3.86238 4.28838 4.46332 4.58534 4.62869 4.81957 4.89423 4.90851 4.92238 4.99968 5.17727 5.24459 5.50868 5.53530 5.59225 5.65114 5.72238 5.78693 5.81946 5.83952 5.87636 5.98615 6.08266 6.12793 6.19439 6.25301 6.28397 6.36178 6.74423 6.81936 6.86315 6.99561 7.10264 7.43393 7.50148 7.59748 7.73275 7.85297 8.07071 8.14097 8.40258 8.63960 8.72799 9.00071 9.97893 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002683 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.580393 B =10432.947679 C =11193.479878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.499 6.499 5 C -0.098 4.098 6 H 0.118 0.882 7 C 0.138 3.862 8 N -0.743 5.743 9 C 0.569 3.431 10 O -0.568 6.568 11 C -0.274 4.274 12 C -0.068 4.068 13 C -0.164 4.164 14 C 0.130 3.870 15 C -0.449 4.449 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.787 5.787 19 Si 0.916 3.084 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.230 4.230 24 C -0.026 4.026 25 C -0.103 4.103 26 C -0.125 4.125 27 C -0.161 4.161 28 C -0.143 4.143 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.284 0.716 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 -11.239 5.101 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.386 6.386 5 C -0.117 4.117 6 H 0.135 0.865 7 C 0.014 3.986 8 N -0.401 5.401 9 C 0.364 3.636 10 O -0.449 6.449 11 C -0.279 4.279 12 C -0.088 4.088 13 C -0.184 4.184 14 C 0.127 3.873 15 C -0.478 4.478 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.412 5.412 19 Si 0.740 3.260 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.250 4.250 24 C -0.046 4.046 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.218 4.218 28 C -0.200 4.200 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.243 0.757 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.285 -10.415 5.143 16.907 hybrid contribution 0.662 -0.526 -0.477 0.971 sum -11.623 -10.941 4.666 16.630 Atomic orbital electron populations 1.23283 0.76290 1.03691 1.02663 1.86500 1.23395 1.33301 1.84214 1.23501 0.91435 0.81357 0.72398 1.90706 1.67123 1.36361 1.44400 1.21415 0.87437 0.99703 1.03173 0.86457 1.20987 0.82697 0.92232 1.02697 1.46385 1.09641 1.10579 1.73505 1.18629 0.87690 0.81938 0.75359 1.90657 1.68493 1.34681 1.51076 1.18936 0.91516 0.95135 1.22271 1.20507 0.95098 0.94848 0.98308 1.21013 0.93659 0.98507 1.05193 1.17828 0.93089 0.90738 0.85623 1.19818 0.94151 1.13456 1.20345 0.89841 1.26033 1.00818 0.93417 0.94472 1.69697 1.37363 1.15884 1.18236 0.86120 0.81459 0.79327 0.79083 1.18246 1.19581 1.19735 1.20832 0.93832 0.97502 1.12802 1.20394 0.94136 0.95454 0.94571 1.21666 0.95853 1.01373 0.95210 1.21679 0.94210 1.02162 0.96315 1.22048 1.02490 0.99739 0.97491 1.21774 1.00995 1.00448 0.96814 0.91800 0.91867 0.88055 0.91246 0.90375 0.75730 0.89383 0.86057 0.90511 0.88225 0.87961 0.90467 0.90937 0.88063 0.92641 0.91563 0.92158 0.92076 0.92739 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.58 101.05 1.07 1.32 16 2 O -0.36 -3.62 10.53 -39.25 -0.41 -4.04 16 3 C 0.47 5.66 7.18 36.01 0.26 5.92 16 4 O -0.50 -7.44 15.65 -18.75 -0.29 -7.73 16 5 C -0.10 -1.09 2.35 -91.77 -0.22 -1.31 16 6 H 0.12 1.14 6.05 -51.93 -0.31 0.83 16 7 C 0.14 2.03 4.42 -4.05 -0.02 2.01 16 8 N -0.74 -12.11 3.64 -61.32 -0.22 -12.33 16 9 C 0.57 11.92 7.76 -12.42 -0.10 11.82 16 10 O -0.57 -13.53 16.29 5.30 0.09 -13.45 16 11 C -0.27 -6.10 5.89 -104.73 -0.62 -6.71 16 12 C -0.07 -1.46 9.47 -39.61 -0.38 -1.83 16 13 C -0.16 -3.90 8.57 -39.27 -0.34 -4.23 16 14 C 0.13 3.25 5.52 -106.80 -0.59 2.66 16 15 C -0.45 -11.03 9.04 -37.75 -0.34 -11.38 16 16 H 0.08 1.97 7.86 -52.48 -0.41 1.56 16 17 C 0.07 1.66 5.30 -17.31 -0.09 1.57 16 18 N -0.79 -18.73 10.91 55.56 0.61 -18.12 16 19 Si 0.92 17.33 29.57 -169.99 -5.03 12.30 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.23 -5.47 9.73 -39.27 -0.38 -5.85 16 24 C -0.03 -0.61 9.52 -39.61 -0.38 -0.99 16 25 C -0.10 -1.04 4.15 -26.73 -0.11 -1.15 16 26 C -0.13 -1.34 2.37 -90.62 -0.21 -1.56 16 27 C -0.16 -1.57 8.20 37.16 0.30 -1.26 16 28 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 33 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 34 H 0.40 5.82 2.81 -40.81 -0.11 5.70 16 35 H 0.09 1.57 6.37 -52.49 -0.33 1.24 16 36 H 0.12 2.92 6.39 -52.49 -0.34 2.58 16 37 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.10 1.34 4.80 -51.93 -0.25 1.09 16 43 H 0.05 0.52 5.51 -51.92 -0.29 0.23 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -29.48 388.15 -8.26 -37.74 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -7.05 Total: 11.84 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.79 Total: -12.05 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.38 Total: -30.45 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.62 Total: -25.22 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.48 -8.26 -37.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340213209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.944 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds