Wall clock time and date at job start Tue Mar 31 2020 19:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99698 * 2 1 4 4 O 1.20827 * 120.00482 * 5.10785 * 3 2 1 5 5 C 1.50705 * 119.99794 * 185.10226 * 3 2 1 6 6 H 1.08998 * 109.47000 * 53.83832 * 5 3 2 7 7 C 1.53002 * 109.47213 * 173.83982 * 5 3 2 8 8 N 1.46490 * 109.47376 * 189.10024 * 7 5 3 9 9 C 1.34780 * 120.00362 * 187.75639 * 8 7 5 10 10 O 1.21578 * 119.99618 * 359.97438 * 9 8 7 11 11 C 1.47639 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.40014 * 119.89679 * 359.72483 * 11 9 8 13 13 C 1.36318 * 120.10664 * 179.71916 * 12 11 9 14 14 C 1.40890 * 119.88932 * 0.57194 * 13 12 11 15 15 C 1.41109 * 120.10326 * 179.67548 * 14 13 12 16 16 H 1.08003 * 120.00190 * 213.06745 * 15 14 13 17 17 C 1.40225 * 120.00110 * 33.05927 * 15 14 13 18 18 N 1.30644 * 119.99755 * 6.58841 * 17 15 14 19 19 Si 1.86797 * 120.00283 * 186.58630 * 17 15 14 20 20 H 1.48503 * 109.47338 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47384 * 120.00229 * 19 17 15 22 22 H 1.48497 * 109.47077 * 240.00281 * 19 17 15 23 23 C 1.40884 * 119.79566 * 359.70448 * 14 13 12 24 24 C 1.36320 * 119.88958 * 359.97438 * 23 14 13 25 25 C 1.53002 * 109.46900 * 293.83874 * 5 3 2 26 26 C 1.52999 * 109.46768 * 172.67099 * 25 5 3 27 27 C 1.53000 * 109.47351 * 297.72728 * 26 25 5 28 28 C 1.53002 * 109.47353 * 177.72955 * 26 25 5 29 29 H 1.09002 * 109.47187 * 299.99681 * 1 2 3 30 30 H 1.09005 * 109.46985 * 59.99666 * 1 2 3 31 31 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46779 * 309.10207 * 7 5 3 33 33 H 1.08997 * 109.47059 * 69.09452 * 7 5 3 34 34 H 0.97012 * 120.00004 * 7.75439 * 8 7 5 35 35 H 1.07994 * 119.94647 * 0.02562 * 12 11 9 36 36 H 1.07997 * 120.05755 * 180.25703 * 13 12 11 37 37 H 0.97000 * 120.00117 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.05980 * 179.97438 * 23 14 13 39 39 H 1.08004 * 119.94198 * 180.02562 * 24 23 14 40 40 H 1.08994 * 109.47028 * 52.67125 * 25 5 3 41 41 H 1.09000 * 109.47071 * 292.66914 * 25 5 3 42 42 H 1.09001 * 109.47243 * 57.72743 * 26 25 5 43 43 H 1.09007 * 109.47028 * 55.21554 * 27 26 25 44 44 H 1.08999 * 109.47778 * 175.21445 * 27 26 25 45 45 H 1.09002 * 109.47257 * 295.21646 * 27 26 25 46 46 H 1.08995 * 109.47568 * 180.02562 * 28 26 25 47 47 H 1.09003 * 109.47024 * 300.00034 * 28 26 25 48 48 H 1.09001 * 109.47119 * 59.99712 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4070 2.2075 0.0932 5 6 3.5617 1.2772 -0.1161 6 1 3.8883 0.7253 -0.9974 7 6 3.9846 2.7419 -0.2458 8 7 5.4104 2.8112 -0.5751 9 6 6.0427 4.0014 -0.5851 10 8 5.4296 5.0176 -0.3214 11 6 7.4795 4.0712 -0.9176 12 6 8.1844 2.8990 -1.2164 13 6 9.5098 2.9591 -1.5295 14 6 10.1730 4.2021 -1.5403 15 6 11.5464 4.2688 -1.8571 16 1 12.1729 5.0142 -1.3898 17 6 12.0981 3.3670 -2.7785 18 7 11.3207 2.5510 -3.4393 19 14 13.9442 3.3326 -3.0611 20 1 14.5965 4.3478 -2.1955 21 1 14.4712 1.9853 -2.7263 22 1 14.2327 3.6371 -4.4856 23 6 9.4608 5.3783 -1.2333 24 6 8.1341 5.3089 -0.9278 25 6 4.2034 0.6698 1.1330 26 6 5.7186 0.5850 0.9379 27 6 6.0302 -0.3410 -0.2395 28 6 6.3662 0.0302 2.2083 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.4055 3.2186 -1.0366 33 1 3.8041 3.2571 0.6976 34 1 5.8995 2.0004 -0.7859 35 1 7.6762 1.9462 -1.2036 36 1 10.0518 2.0549 -1.7639 37 1 11.7022 1.9275 -4.0769 38 1 9.9650 6.3333 -1.2399 39 1 7.5872 6.2100 -0.6927 40 1 3.8019 -0.3299 1.2981 41 1 3.9828 1.2972 1.9965 42 1 6.1147 1.5795 0.7327 43 1 5.4997 0.0071 -1.1259 44 1 7.1030 -0.3351 -0.4325 45 1 5.7100 -1.3548 0.0009 46 1 7.4456 -0.0297 2.0695 47 1 6.1442 0.6900 3.0471 48 1 5.9700 -0.9643 2.4135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340213209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:03 Heat of formation + Delta-G solvation = -131.922319 kcal Electronic energy + Delta-G solvation = -28958.887420 eV Core-core repulsion = 24977.564927 eV Total energy + Delta-G solvation = -3981.322493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95143 -40.91268 -39.17268 -38.42310 -37.56977 -35.59363 -35.19033 -33.28528 -31.77591 -31.30915 -28.80425 -28.07318 -28.02622 -26.82390 -24.95559 -23.48011 -22.76347 -21.77732 -21.54401 -20.58727 -19.33444 -18.79711 -18.51338 -17.79604 -17.50378 -17.11989 -16.81399 -16.56817 -15.78310 -15.72892 -15.27336 -15.12156 -14.96029 -14.77505 -14.52983 -14.43690 -14.20005 -14.04521 -13.87590 -13.65174 -13.30149 -13.25339 -12.98807 -12.89987 -12.84165 -12.64839 -12.56839 -12.36280 -12.30320 -12.02598 -11.84362 -11.71867 -11.67776 -11.47816 -11.37024 -11.31861 -11.17620 -10.77653 -9.97631 -9.57193 -9.30295 -8.69227 -6.48605 0.40424 1.02310 1.13862 1.41760 1.42876 1.48598 1.56511 2.11797 2.20918 2.43039 2.81603 3.29376 3.56375 3.66872 3.74113 4.04013 4.06833 4.13555 4.19711 4.27820 4.28787 4.31225 4.32863 4.44241 4.63608 4.68038 4.71517 4.80111 4.85113 4.88933 4.92557 4.96667 5.06010 5.08188 5.11010 5.14387 5.26009 5.30248 5.38922 5.40985 5.46060 5.54279 5.61944 5.79726 5.92382 6.01557 6.25271 6.56182 6.59974 6.61296 6.81167 6.89274 7.36074 8.26274 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002683 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.580393 B =10432.947679 C =11193.479878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.477 3.523 4 O -0.535 6.535 5 C -0.088 4.088 6 H 0.140 0.860 7 C 0.139 3.861 8 N -0.720 5.720 9 C 0.569 3.431 10 O -0.601 6.601 11 C -0.281 4.281 12 C -0.055 4.055 13 C -0.180 4.180 14 C 0.104 3.896 15 C -0.479 4.479 16 H 0.082 0.918 17 C 0.035 3.965 18 N -0.812 5.812 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.260 1.260 22 H -0.267 1.267 23 C -0.243 4.243 24 C -0.038 4.038 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.162 4.162 28 C -0.142 4.142 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.413 0.587 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.294 0.706 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 -13.956 4.922 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.321 3.679 4 O -0.424 6.424 5 C -0.108 4.108 6 H 0.157 0.843 7 C 0.015 3.985 8 N -0.377 5.377 9 C 0.362 3.638 10 O -0.485 6.485 11 C -0.286 4.286 12 C -0.074 4.074 13 C -0.200 4.200 14 C 0.101 3.899 15 C -0.508 4.508 16 H 0.100 0.900 17 C -0.182 4.182 18 N -0.437 5.437 19 Si 0.809 3.191 20 H -0.183 1.183 21 H -0.185 1.185 22 H -0.192 1.192 23 C -0.263 4.263 24 C -0.057 4.057 25 C -0.135 4.135 26 C -0.143 4.143 27 C -0.219 4.219 28 C -0.200 4.200 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.558 -13.190 4.966 18.877 hybrid contribution 0.595 0.273 -0.394 0.764 sum -11.963 -12.917 4.572 18.190 Atomic orbital electron populations 1.23604 0.74578 1.05944 1.02548 1.86485 1.24998 1.31842 1.83550 1.23517 0.91511 0.81441 0.71475 1.90704 1.67876 1.37626 1.46208 1.21324 0.87395 0.97191 1.04845 0.84276 1.20994 0.81158 0.94917 1.01398 1.46168 1.10366 1.09498 1.71706 1.18482 0.87268 0.82736 0.75278 1.90638 1.68980 1.36156 1.52765 1.19185 0.92485 0.95150 1.21741 1.20724 0.94322 0.96002 0.96392 1.21031 0.94606 0.97905 1.06430 1.18171 0.93890 0.91514 0.86346 1.20051 0.94374 1.14731 1.21622 0.89953 1.26833 1.05248 0.92537 0.93546 1.69724 1.39331 1.16197 1.18455 0.85052 0.75581 0.79585 0.78928 1.18272 1.18490 1.19200 1.20959 0.94187 0.97722 1.13383 1.20531 0.94117 0.96185 0.94845 1.21648 0.95264 1.02395 0.94185 1.21602 0.94519 1.00871 0.97282 1.22076 1.02137 1.00635 0.97079 1.21766 1.00571 1.01388 0.96238 0.92041 0.91983 0.84619 0.92441 0.91902 0.74421 0.85944 0.86610 0.89530 0.87681 0.87896 0.88060 0.91601 0.90947 0.92150 0.92347 0.90140 0.92807 0.93239 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.58 113.37 1.20 1.52 16 2 O -0.35 -6.20 10.53 -51.38 -0.54 -6.74 16 3 C 0.48 10.66 7.18 71.24 0.51 11.17 16 4 O -0.53 -15.66 15.65 21.96 0.34 -15.32 16 5 C -0.09 -1.80 2.35 -11.54 -0.03 -1.83 16 6 H 0.14 2.27 6.05 -2.39 -0.01 2.25 16 7 C 0.14 4.03 4.42 86.38 0.38 4.42 16 8 N -0.72 -23.00 3.64 -466.18 -1.70 -24.70 16 9 C 0.57 23.94 7.76 86.73 0.67 24.62 16 10 O -0.60 -29.23 16.29 -3.96 -0.06 -29.29 16 11 C -0.28 -12.61 5.89 -19.93 -0.12 -12.73 16 12 C -0.06 -2.34 9.47 22.25 0.21 -2.13 16 13 C -0.18 -8.64 8.57 22.47 0.19 -8.45 16 14 C 0.10 5.30 5.52 -21.28 -0.12 5.19 16 15 C -0.48 -23.99 9.04 23.46 0.21 -23.78 16 16 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16 17 C 0.04 1.62 5.30 85.35 0.45 2.08 16 18 N -0.81 -38.49 10.91 21.87 0.24 -38.25 16 19 Si 0.99 34.97 29.57 68.60 2.03 36.99 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 22 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 23 C -0.24 -11.91 9.73 22.47 0.22 -11.70 16 24 C -0.04 -1.79 9.52 22.25 0.21 -1.58 16 25 C -0.10 -1.72 4.15 30.59 0.13 -1.59 16 26 C -0.12 -2.40 2.37 -10.79 -0.03 -2.42 16 27 C -0.16 -2.68 8.20 71.98 0.59 -2.09 16 28 C -0.14 -2.57 9.19 71.98 0.66 -1.91 16 29 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.83 7.90 -2.39 -0.02 1.81 16 33 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 34 H 0.41 11.31 2.81 -92.70 -0.26 11.05 16 35 H 0.12 4.18 6.37 -2.91 -0.02 4.17 16 36 H 0.12 5.62 6.39 -2.91 -0.02 5.60 16 37 H 0.29 12.41 8.29 -92.71 -0.77 11.64 16 38 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 40 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 41 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 42 H 0.07 1.83 4.80 -2.39 -0.01 1.82 16 43 H 0.06 0.92 5.51 -2.38 -0.01 0.91 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -65.06 388.15 6.38 -58.68 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.72 Total: 39.83 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.36 Total: -21.21 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -1.46 Total: -62.95 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.26 Total: -51.35 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 36.99 kcal Total: -65.06 6.38 -58.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340213209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.238 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds