Wall clock time and date at job start Tue Mar 31 2020 19:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50703 * 119.93018 * 180.29987 * 9 8 7 11 11 C 1.50693 * 109.46995 * 270.25217 * 10 9 8 12 12 O 1.21282 * 120.00342 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99707 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46773 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47222 * 299.99833 * 15 14 13 17 17 C 1.53002 * 109.46945 * 60.00022 * 15 14 13 18 18 C 1.52994 * 109.46892 * 179.97438 * 15 14 13 19 19 C 1.50707 * 109.47046 * 179.97438 * 18 15 14 20 20 H 1.07995 * 119.99977 * 0.02562 * 19 18 15 21 21 C 1.37876 * 119.99925 * 180.02562 * 19 18 15 22 22 N 1.31510 * 120.00076 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99988 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46808 * 90.00727 * 23 21 19 25 25 H 1.48499 * 109.47130 * 209.99997 * 23 21 19 26 26 H 1.48493 * 109.47427 * 330.00455 * 23 21 19 27 27 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 28 28 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 30 30 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 31 31 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 34 34 H 1.09005 * 109.46626 * 30.24674 * 10 9 8 35 35 H 1.08997 * 109.47068 * 150.24798 * 10 9 8 36 36 H 0.96995 * 120.00090 * 359.97438 * 13 11 10 37 37 H 1.09005 * 109.46822 * 299.99340 * 14 13 11 38 38 H 1.08991 * 109.47210 * 59.99663 * 14 13 11 39 39 H 1.09001 * 109.47146 * 60.00013 * 16 15 14 40 40 H 1.08997 * 109.47319 * 180.02562 * 16 15 14 41 41 H 1.09005 * 109.46739 * 300.00287 * 16 15 14 42 42 H 1.08993 * 109.47548 * 60.00031 * 17 15 14 43 43 H 1.08997 * 109.46720 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47054 * 299.99761 * 17 15 14 45 45 H 1.08997 * 109.48003 * 300.00115 * 18 15 14 46 46 H 1.09006 * 109.46979 * 60.00391 * 18 15 14 47 47 H 0.96999 * 120.00275 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.07576 * 179.75004 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0003 11 6 6.4732 4.3720 1.4209 12 8 6.1122 3.6717 2.3430 13 7 7.0799 5.5502 1.6668 14 6 7.3037 5.9846 3.0479 15 6 8.0047 7.3446 3.0475 16 6 9.3487 7.2254 2.3262 17 6 7.1278 8.3700 2.3260 18 6 8.2378 7.7986 4.4898 19 6 8.9289 9.1379 4.4893 20 1 9.1765 9.6174 3.5539 21 6 9.2449 9.7509 5.6832 22 7 9.8474 10.9199 5.6829 23 14 8.8159 8.9217 7.3012 24 1 9.9463 8.0597 7.7306 25 1 8.5619 9.9565 8.3356 26 1 7.5987 8.0899 7.1238 27 6 4.1759 2.5199 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8159 -0.8558 0.0006 32 1 6.2712 -0.7157 0.0010 33 1 7.3829 1.4790 0.0110 34 1 7.2012 3.8405 -0.5135 35 1 5.6184 4.6549 -0.5139 36 1 7.3689 6.1101 0.9294 37 1 6.3461 6.0692 3.5619 38 1 7.9286 5.2543 3.5618 39 1 9.1822 6.9021 1.2986 40 1 9.8483 8.1941 2.3262 41 1 9.9733 6.4948 2.8402 42 1 6.1703 8.4550 2.8398 43 1 7.6270 9.3390 2.3261 44 1 6.9613 8.0468 1.2984 45 1 7.2802 7.8836 5.0034 46 1 8.8624 7.0681 5.0041 47 1 10.0695 11.3514 6.5227 48 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345882175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:54 Heat of formation + Delta-G solvation = -114.121212 kcal Electronic energy + Delta-G solvation = -27719.425881 eV Core-core repulsion = 23738.875302 eV Total energy + Delta-G solvation = -3980.550579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90701 -40.00181 -38.87895 -37.20673 -36.71984 -33.67355 -33.30223 -32.09573 -31.61465 -28.76152 -28.01829 -27.62362 -26.58258 -25.84271 -24.42024 -22.77405 -22.06370 -21.09590 -20.24147 -18.44322 -17.86047 -17.45452 -17.03220 -16.73209 -16.64867 -16.37138 -15.82471 -15.61435 -14.90760 -14.67219 -14.19234 -13.94596 -13.92461 -13.79345 -13.70049 -13.45156 -13.27710 -12.74725 -12.63247 -12.58528 -12.49278 -12.28087 -12.09383 -11.89435 -11.43886 -11.25870 -11.16307 -11.14144 -11.02209 -10.83206 -10.63492 -10.50916 -9.99404 -9.98464 -9.75774 -9.52201 -9.33422 -9.08277 -8.99647 -8.83338 -8.54690 -6.05419 -4.02771 0.40232 1.01277 2.23180 2.32591 2.71264 3.24535 3.30762 3.38975 3.43187 3.61391 4.27929 4.36075 4.44697 4.50062 4.73007 4.75983 4.82298 4.89050 4.90601 4.99098 5.09969 5.20535 5.25257 5.27148 5.37474 5.49955 5.51695 5.61505 5.62540 5.89902 5.94066 6.07058 6.08232 6.09770 6.16585 6.18701 6.29223 6.45588 6.51282 6.57305 6.66854 6.88193 6.99689 7.03287 7.18578 7.35086 7.40812 7.62930 7.78108 8.32857 8.51507 8.98424 9.57287 11.07221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.002034 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.237714 B =13764.726752 C =14253.861570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.505 6.505 5 C -0.129 4.129 6 C -0.064 4.064 7 C -0.132 4.132 8 C -0.066 4.066 9 C -0.073 4.073 10 C -0.105 4.105 11 C 0.508 3.492 12 O -0.538 6.538 13 N -0.721 5.721 14 C 0.126 3.874 15 C -0.063 4.063 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 C -0.038 4.038 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 -22.544 -16.979 30.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.393 6.393 5 C -0.130 4.130 6 C -0.082 4.082 7 C -0.150 4.150 8 C -0.084 4.084 9 C -0.074 4.074 10 C -0.145 4.145 11 C 0.293 3.707 12 O -0.415 6.415 13 N -0.373 5.373 14 C 0.003 3.997 15 C -0.064 4.064 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.135 4.135 22 N -0.542 5.542 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 C -0.056 4.056 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.235 0.765 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.032 0.968 47 H 0.072 0.928 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.896 -22.607 -16.175 30.236 hybrid contribution -0.224 0.042 0.741 0.776 sum -12.119 -22.565 -15.434 29.904 Atomic orbital electron populations 1.23297 0.75845 1.03806 1.02777 1.86531 1.23667 1.32673 1.84414 1.21241 0.89185 0.81442 0.72637 1.90848 1.66794 1.36011 1.45684 1.18987 0.88794 0.95011 1.10205 1.21431 0.93994 0.97741 0.95014 1.21115 0.94295 0.97993 1.01577 1.21319 1.00337 0.91876 0.94871 1.19226 0.92825 0.94409 1.00900 1.20710 1.02862 0.95182 0.95733 1.20420 0.78021 0.81449 0.90833 1.90730 1.50457 1.54126 1.46168 1.46171 1.60331 1.20743 1.10083 1.21637 1.00352 0.96493 0.81214 1.20694 0.94683 0.91696 0.99308 1.21775 0.96776 1.02909 0.97118 1.21775 0.99394 1.00308 0.97141 1.19593 0.96857 0.97244 0.90313 1.21074 1.37491 1.01947 0.94374 0.90394 1.25004 0.94708 0.94725 0.99046 1.69898 1.41811 1.15696 1.26837 0.86858 0.79533 0.79429 0.83945 1.20381 1.21494 1.19000 1.21086 0.93885 0.96843 0.93816 0.87900 0.91696 0.91769 0.84545 0.84961 0.85275 0.87558 0.87643 0.76473 0.91857 0.91866 0.94978 0.90868 0.93431 0.93404 0.90863 0.94963 0.96374 0.96834 0.92790 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.41 9.82 -40.51 -0.40 -3.80 16 3 C 0.51 5.98 7.90 34.60 0.27 6.26 16 4 O -0.50 -7.18 16.14 -19.24 -0.31 -7.49 16 5 C -0.13 -1.41 5.87 -104.99 -0.62 -2.03 16 6 C -0.06 -0.56 9.62 -39.17 -0.38 -0.94 16 7 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 8 C -0.07 -0.59 9.69 -39.49 -0.38 -0.97 16 9 C -0.07 -0.74 4.37 -104.68 -0.46 -1.20 16 10 C -0.10 -0.92 5.82 -29.04 -0.17 -1.09 16 11 C 0.51 6.70 7.82 -10.99 -0.09 6.62 16 12 O -0.54 -9.46 16.03 5.56 0.09 -9.37 16 13 N -0.72 -9.32 4.96 -60.29 -0.30 -9.62 16 14 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 15 C -0.06 -1.13 0.54 -154.51 -0.08 -1.21 16 16 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 17 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 18 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 19 C -0.51 -13.57 8.20 -34.44 -0.28 -13.85 16 20 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 21 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 22 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 23 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 27 C -0.04 -0.43 9.24 -39.17 -0.36 -0.79 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 0.94 7.61 -52.49 -0.40 0.54 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.11 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.40 4.20 6.16 -40.82 -0.25 3.95 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 40 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 44 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 46 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -34.38 394.70 -7.68 -42.06 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.34 Total: 1.17 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.48 Total: -9.41 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.47 Total: -35.94 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.62 Total: -20.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.38 -7.68 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345882175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.060 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds