Wall clock time and date at job start Tue Mar 31 2020 19:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50703 * 119.93018 * 180.29987 * 9 8 7 11 11 C 1.50693 * 109.46995 * 270.25217 * 10 9 8 12 12 O 1.21282 * 120.00342 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99707 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46773 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47222 * 299.99833 * 15 14 13 17 17 C 1.53002 * 109.46945 * 60.00022 * 15 14 13 18 18 C 1.52994 * 109.46892 * 179.97438 * 15 14 13 19 19 C 1.50707 * 109.47046 * 179.97438 * 18 15 14 20 20 H 1.07995 * 119.99977 * 0.02562 * 19 18 15 21 21 C 1.37876 * 119.99925 * 180.02562 * 19 18 15 22 22 N 1.31510 * 120.00076 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99988 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46808 * 90.00727 * 23 21 19 25 25 H 1.48499 * 109.47130 * 209.99997 * 23 21 19 26 26 H 1.48493 * 109.47427 * 330.00455 * 23 21 19 27 27 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 28 28 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 30 30 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 31 31 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 34 34 H 1.09005 * 109.46626 * 30.24674 * 10 9 8 35 35 H 1.08997 * 109.47068 * 150.24798 * 10 9 8 36 36 H 0.96995 * 120.00090 * 359.97438 * 13 11 10 37 37 H 1.09005 * 109.46822 * 299.99340 * 14 13 11 38 38 H 1.08991 * 109.47210 * 59.99663 * 14 13 11 39 39 H 1.09001 * 109.47146 * 60.00013 * 16 15 14 40 40 H 1.08997 * 109.47319 * 180.02562 * 16 15 14 41 41 H 1.09005 * 109.46739 * 300.00287 * 16 15 14 42 42 H 1.08993 * 109.47548 * 60.00031 * 17 15 14 43 43 H 1.08997 * 109.46720 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47054 * 299.99761 * 17 15 14 45 45 H 1.08997 * 109.48003 * 300.00115 * 18 15 14 46 46 H 1.09006 * 109.46979 * 60.00391 * 18 15 14 47 47 H 0.96999 * 120.00275 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.07576 * 179.75004 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0003 11 6 6.4732 4.3720 1.4209 12 8 6.1122 3.6717 2.3430 13 7 7.0799 5.5502 1.6668 14 6 7.3037 5.9846 3.0479 15 6 8.0047 7.3446 3.0475 16 6 9.3487 7.2254 2.3262 17 6 7.1278 8.3700 2.3260 18 6 8.2378 7.7986 4.4898 19 6 8.9289 9.1379 4.4893 20 1 9.1765 9.6174 3.5539 21 6 9.2449 9.7509 5.6832 22 7 9.8474 10.9199 5.6829 23 14 8.8159 8.9217 7.3012 24 1 9.9463 8.0597 7.7306 25 1 8.5619 9.9565 8.3356 26 1 7.5987 8.0899 7.1238 27 6 4.1759 2.5199 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8159 -0.8558 0.0006 32 1 6.2712 -0.7157 0.0010 33 1 7.3829 1.4790 0.0110 34 1 7.2012 3.8405 -0.5135 35 1 5.6184 4.6549 -0.5139 36 1 7.3689 6.1101 0.9294 37 1 6.3461 6.0692 3.5619 38 1 7.9286 5.2543 3.5618 39 1 9.1822 6.9021 1.2986 40 1 9.8483 8.1941 2.3262 41 1 9.9733 6.4948 2.8402 42 1 6.1703 8.4550 2.8398 43 1 7.6270 9.3390 2.3261 44 1 6.9613 8.0468 1.2984 45 1 7.2802 7.8836 5.0034 46 1 8.8624 7.0681 5.0041 47 1 10.0695 11.3514 6.5227 48 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345882175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:53 Heat of formation + Delta-G solvation = -135.124348 kcal Electronic energy + Delta-G solvation = -27720.336645 eV Core-core repulsion = 23738.875302 eV Total energy + Delta-G solvation = -3981.461344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71140 -41.00181 -39.75038 -38.57893 -37.55591 -35.17666 -34.18432 -33.81767 -32.30968 -29.96622 -29.24523 -28.54603 -27.96927 -27.05414 -25.14440 -24.41697 -22.97245 -21.95799 -21.25125 -19.81790 -18.91267 -18.71285 -18.24808 -17.94265 -17.44543 -17.04392 -16.79800 -16.68868 -16.14638 -15.89884 -15.41816 -15.27446 -15.11508 -14.81343 -14.59902 -14.48544 -14.23054 -14.13391 -14.00354 -13.94296 -13.34420 -13.13670 -13.00068 -12.86438 -12.83229 -12.64557 -12.54326 -12.29602 -12.16352 -12.09554 -11.88391 -11.78261 -11.67345 -11.50583 -11.28513 -10.94507 -10.86034 -10.71251 -10.04014 -10.00331 -9.80274 -8.23191 -6.23013 -0.34437 0.32041 1.34270 1.37482 1.42900 1.47282 1.62218 1.71549 2.29503 2.37919 2.82363 3.12101 3.57940 3.66356 3.87678 3.91948 4.06599 4.07404 4.12060 4.17830 4.25214 4.28483 4.29077 4.35105 4.54743 4.64281 4.66142 4.68512 4.73019 4.80247 4.85058 4.97083 4.98463 5.04403 5.10921 5.16633 5.25783 5.30703 5.38590 5.39774 5.41455 5.49447 5.51241 5.57745 5.71005 5.77064 5.86877 6.37442 6.58637 6.64913 6.83931 7.33605 7.39684 8.92229 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.002034 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.237714 B =13764.726752 C =14253.861570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.541 6.541 5 C -0.152 4.152 6 C -0.062 4.062 7 C -0.130 4.130 8 C -0.069 4.069 9 C -0.086 4.086 10 C -0.096 4.096 11 C 0.508 3.492 12 O -0.585 6.585 13 N -0.711 5.711 14 C 0.140 3.860 15 C -0.059 4.059 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.004 4.004 19 C -0.501 4.501 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.933 3.067 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.254 1.254 27 C -0.058 4.058 28 H 0.138 0.862 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.415 0.585 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.011 0.989 46 H 0.013 0.987 47 H 0.262 0.738 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 -25.373 -18.496 33.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.433 6.433 5 C -0.153 4.153 6 C -0.080 4.080 7 C -0.147 4.147 8 C -0.087 4.087 9 C -0.087 4.087 10 C -0.135 4.135 11 C 0.295 3.705 12 O -0.465 6.465 13 N -0.364 5.364 14 C 0.015 3.985 15 C -0.059 4.059 16 C -0.180 4.180 17 C -0.182 4.182 18 C -0.042 4.042 19 C -0.539 4.539 20 H 0.072 0.928 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.758 3.242 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.178 1.178 27 C -0.076 4.076 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.253 0.747 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.029 0.971 46 H 0.031 0.969 47 H 0.071 0.929 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.789 -25.455 -17.732 33.186 hybrid contribution -0.280 0.867 1.141 1.460 sum -12.069 -24.587 -16.591 32.023 Atomic orbital electron populations 1.23607 0.74261 1.06053 1.02544 1.86523 1.25255 1.31496 1.83828 1.21529 0.89699 0.81494 0.71707 1.90817 1.67613 1.37182 1.47703 1.19146 0.88558 0.95907 1.11670 1.21691 0.94534 0.97703 0.94027 1.21512 0.94097 0.99029 1.00094 1.21700 1.01541 0.91728 0.93726 1.19427 0.92396 0.95641 1.01214 1.20765 1.05060 0.94923 0.92736 1.21169 0.76518 0.80549 0.92233 1.90717 1.52249 1.55446 1.48107 1.45988 1.60340 1.21143 1.08961 1.21218 0.99036 0.95053 0.83179 1.20559 0.95984 0.92841 0.96532 1.21701 0.95503 1.01358 0.99473 1.21712 0.98335 0.98698 0.99439 1.19576 0.95737 0.95105 0.93818 1.21371 1.36130 1.03146 0.93236 0.92828 1.25832 0.95201 0.95394 1.02729 1.70033 1.44011 1.17484 1.27615 0.85912 0.79802 0.78561 0.79883 1.19598 1.21488 1.17845 1.21149 0.94715 0.96658 0.95075 0.84389 0.92300 0.91725 0.82775 0.81908 0.83023 0.83876 0.85526 0.74704 0.93414 0.92733 0.90781 0.93722 0.93647 0.94080 0.93630 0.90885 0.97080 0.96911 0.92873 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.55 9.82 -56.18 -0.55 -7.10 16 3 C 0.51 12.08 7.90 70.33 0.56 12.63 16 4 O -0.54 -16.01 16.14 19.93 0.32 -15.69 16 5 C -0.15 -3.26 5.87 -20.10 -0.12 -3.38 16 6 C -0.06 -0.97 9.62 22.54 0.22 -0.75 16 7 C -0.13 -1.69 10.03 22.23 0.22 -1.46 16 8 C -0.07 -1.02 9.69 22.33 0.22 -0.80 16 9 C -0.09 -1.57 4.37 -19.90 -0.09 -1.66 16 10 C -0.10 -1.36 5.82 29.10 0.17 -1.19 16 11 C 0.51 12.15 7.82 87.65 0.69 12.83 16 12 O -0.59 -19.89 16.03 -3.04 -0.05 -19.94 16 13 N -0.71 -16.30 4.96 -463.05 -2.30 -18.59 16 14 C 0.14 4.33 4.56 86.38 0.39 4.72 16 15 C -0.06 -2.03 0.54 -52.18 -0.03 -2.06 16 16 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 17 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 18 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 19 C -0.50 -27.10 8.20 25.60 0.21 -26.89 16 20 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16 21 C 0.00 0.27 5.47 84.66 0.46 0.73 16 22 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 23 Si 0.93 44.69 27.47 68.60 1.88 46.57 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 27 C -0.06 -1.27 9.24 22.54 0.21 -1.07 16 28 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.15 1.77 7.61 -2.91 -0.02 1.75 16 32 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 1.01 8.09 -2.38 -0.02 0.99 16 35 H 0.13 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.41 6.95 6.16 -92.71 -0.57 6.37 16 37 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 40 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 41 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 44 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 45 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 46 H 0.01 0.57 7.57 -2.38 -0.02 0.55 16 47 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 48 H 0.12 2.90 7.65 -2.91 -0.02 2.88 16 Total: -1.00 -78.39 394.70 5.51 -72.88 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.34 Total: 13.76 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.56 Total: -13.69 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -2.00 Total: -76.80 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.28 Total: -42.72 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -78.39 5.51 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345882175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.241 kcal (2) G-P(sol) polarization free energy of solvation -78.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds