Wall clock time and date at job start Tue Mar 31 2020 18:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35247 * 126.06970 * 2 1 4 4 C 1.40403 * 107.86349 * 180.15996 * 3 2 1 5 5 N 1.40197 * 125.96872 * 179.83235 * 4 3 2 6 6 C 1.34775 * 120.00195 * 359.71063 * 5 4 3 7 7 O 1.21595 * 119.99952 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00179 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00237 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 N 1.33241 * 125.52671 * 269.69903 * 12 11 10 14 14 C 1.30831 * 109.82677 * 179.85560 * 13 12 11 15 15 N 1.34425 * 108.07738 * 0.39700 * 14 13 12 16 16 H 0.97001 * 126.82292 * 179.78979 * 15 14 13 17 17 N 1.30717 * 125.52587 * 89.99840 * 12 11 10 18 18 N 1.31209 * 108.05510 * 359.56532 * 4 3 2 19 19 N 1.34956 * 126.06901 * 179.68361 * 2 1 3 20 20 C 1.46506 * 125.97937 * 359.97438 * 19 2 1 21 21 C 1.50703 * 109.47194 * 270.00414 * 20 19 2 22 22 H 1.07999 * 119.99584 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99987 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00117 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99921 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47098 * 59.99941 * 25 23 21 27 27 H 1.48501 * 109.47232 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47331 * 299.99987 * 25 23 21 29 29 H 1.09000 * 109.47489 * 270.32091 * 1 2 3 30 30 H 1.09005 * 109.47420 * 30.31658 * 1 2 3 31 31 H 1.09001 * 109.47517 * 150.32030 * 1 2 3 32 32 H 1.07997 * 126.06595 * 359.97438 * 3 2 1 33 33 H 0.96996 * 119.99762 * 179.71793 * 5 4 3 34 34 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 35 35 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 36 36 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 37 37 H 1.09000 * 109.47050 * 299.99945 * 10 9 8 38 38 H 1.09001 * 109.46801 * 60.00058 * 10 9 8 39 39 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 40 40 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 41 41 H 1.08001 * 125.95893 * 180.12539 * 14 13 12 42 42 H 1.09000 * 109.47000 * 30.00013 * 20 19 2 43 43 H 1.08994 * 109.46949 * 150.00029 * 20 19 2 44 44 H 0.96998 * 120.00323 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0037 5 7 4.7738 1.4751 -0.0083 6 6 4.6370 2.8159 -0.0153 7 8 3.5277 3.3139 -0.0171 8 7 5.7297 3.6047 -0.0191 9 6 5.5811 5.0621 -0.0261 10 6 6.9644 5.7159 -0.0300 11 6 6.8091 7.2379 -0.0379 12 6 8.1717 7.8819 -0.0411 13 7 8.8691 8.2235 1.0416 14 6 10.0099 8.7554 0.6850 15 7 10.0607 8.7719 -0.6582 16 1 10.7842 9.1106 -1.2085 17 7 8.8586 8.2008 -1.1065 18 7 3.6336 -0.6575 0.0036 19 7 2.3016 -1.0908 0.0060 20 6 1.8500 -2.4846 0.0143 21 6 1.6956 -2.9542 1.4379 22 1 1.9126 -2.2819 2.2548 23 6 1.2774 -4.2421 1.6974 24 7 1.0127 -5.0606 0.7026 25 14 1.0867 -4.8244 3.4620 26 1 0.0868 -3.9753 4.1581 27 1 0.6277 -6.2367 3.4704 28 1 2.3933 -4.7240 4.1604 29 1 -0.3634 0.0058 1.0276 30 1 -0.3634 0.8872 -0.5188 31 1 -0.3634 -0.8928 -0.5088 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0779 -0.0065 34 1 6.6147 3.2074 -0.0172 35 1 5.0331 5.3758 0.8623 36 1 5.0330 5.3672 -0.9175 37 1 7.5129 5.4108 0.8613 38 1 7.5120 5.4022 -0.9187 39 1 6.2608 7.5426 -0.9294 40 1 6.2614 7.5519 0.8506 41 1 10.7753 9.1216 1.3532 42 1 0.8912 -2.5588 -0.4988 43 1 2.5845 -3.1074 -0.4962 44 1 0.7188 -5.9668 0.8852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345971606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:20 Heat of formation + Delta-G solvation = 129.214478 kcal Electronic energy + Delta-G solvation = -26476.465271 eV Core-core repulsion = 22467.511678 eV Total energy + Delta-G solvation = -4008.953593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58477 -40.69930 -39.56918 -36.44715 -34.70384 -34.05987 -33.30440 -32.44919 -31.49873 -31.05997 -30.59803 -27.21655 -26.38151 -26.17353 -23.42410 -23.08574 -22.42114 -21.47923 -20.62860 -19.79147 -19.48675 -18.82603 -17.67099 -16.64923 -16.42216 -16.22198 -15.91691 -15.66249 -15.47252 -14.92039 -14.76633 -14.48459 -14.16998 -13.95652 -13.71932 -13.01268 -12.82596 -12.75632 -12.59929 -12.42780 -12.22337 -12.10945 -11.81278 -11.62104 -11.35178 -11.28204 -11.06004 -10.77973 -10.59391 -10.52577 -10.41067 -10.21487 -10.16909 -9.95271 -9.60676 -9.50520 -9.16801 -8.60399 -7.85404 -7.34492 -6.21661 -4.29170 1.10178 2.15261 2.32668 2.51352 2.71100 3.16262 3.26099 3.29602 3.34122 3.56348 3.70403 3.90098 4.14468 4.29476 4.38984 4.40645 4.69154 4.75355 4.80578 5.11864 5.20561 5.28645 5.42661 5.50294 5.70056 5.75683 5.77201 5.80381 5.93785 5.98411 6.17111 6.26776 6.32790 6.49780 6.51758 6.66032 6.68271 7.00003 7.10285 7.19587 7.57926 7.58749 7.71100 7.93283 8.01007 8.12686 8.65855 8.72773 8.80539 9.36882 10.85418 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.001611 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.751795 B =17379.440856 C =17815.518217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.566 6.566 8 N -0.745 5.745 9 C 0.142 3.858 10 C -0.124 4.124 11 C -0.024 4.024 12 C 0.232 3.768 13 N -0.540 5.540 14 C 0.262 3.738 15 N -0.487 5.487 16 H 0.442 0.558 17 N -0.313 5.313 18 N -0.325 5.325 19 N -0.319 5.319 20 C 0.259 3.741 21 C -0.535 4.535 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.406 0.594 34 H 0.396 0.604 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.223 0.777 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.621 26.659 -2.780 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.412 3.588 7 O -0.441 6.441 8 N -0.402 5.402 9 C 0.017 3.983 10 C -0.163 4.163 11 C -0.064 4.064 12 C -0.051 4.051 13 N -0.269 5.269 14 C -0.038 4.038 15 N -0.204 5.204 16 H 0.287 0.713 17 N -0.142 5.142 18 N -0.155 5.155 19 N -0.101 5.101 20 C 0.142 3.858 21 C -0.574 4.574 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.239 0.761 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.806 25.597 -3.197 30.253 hybrid contribution 1.342 0.177 0.772 1.559 sum 17.148 25.775 -2.425 31.053 Atomic orbital electron populations 1.20326 0.87952 1.02767 1.03121 1.21055 0.94868 0.87181 1.00994 1.21237 0.89692 0.99817 1.21257 1.18665 0.86588 0.89246 1.02605 1.41392 1.07572 1.03758 1.76699 1.15609 0.84743 0.80381 0.78089 1.90875 1.23519 1.73486 1.56227 1.44985 1.07588 1.06535 1.81103 1.21148 0.96329 0.77763 1.03029 1.21714 0.97310 0.93675 1.03605 1.19845 0.87863 0.93606 1.05094 1.24291 0.98056 0.97317 0.85431 1.70462 1.04934 1.20032 1.31436 1.26158 0.96948 0.96175 0.84490 1.48162 1.16978 1.48128 1.07169 0.71258 1.78051 0.94282 1.19312 1.22604 1.77245 0.99931 1.08353 1.30017 1.48946 1.00900 1.07714 1.52551 1.19662 0.95929 0.71417 0.98838 1.21299 1.46717 0.97968 0.91416 0.91803 1.24919 0.94704 0.96047 0.98094 1.69910 1.44954 1.06980 1.31198 0.86416 0.78786 0.77625 0.83853 1.19939 1.20987 1.20025 0.90472 0.90837 0.90924 0.82209 0.75974 0.76984 0.90970 0.91102 0.90518 0.90878 0.88844 0.88323 0.76086 0.92823 0.93075 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.01 0.36 -1.10 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -6.14 9.52 -39.83 -0.38 -6.52 16 4 C 0.28 5.91 8.11 -154.36 -1.25 4.66 16 5 N -0.64 -10.31 5.46 -15.51 -0.08 -10.40 16 6 C 0.71 10.75 8.53 -86.93 -0.74 10.01 16 7 O -0.57 -10.50 13.47 5.28 0.07 -10.43 16 8 N -0.75 -7.52 5.56 -65.23 -0.36 -7.88 16 9 C 0.14 1.20 5.67 -4.04 -0.02 1.17 16 10 C -0.12 -0.79 5.31 -26.73 -0.14 -0.93 16 11 C -0.02 -0.15 5.84 -27.88 -0.16 -0.32 16 12 C 0.23 1.95 7.39 -156.85 -1.16 0.79 16 13 N -0.54 -4.45 11.19 -11.97 -0.13 -4.58 16 14 C 0.26 1.17 13.13 -90.66 -1.19 -0.02 16 15 N -0.49 -2.29 7.45 29.53 0.22 -2.07 16 16 H 0.44 0.46 8.96 -182.34 -1.63 -1.17 16 17 N -0.31 -2.66 12.80 32.42 0.41 -2.24 16 18 N -0.32 -7.66 12.59 31.44 0.40 -7.26 16 19 N -0.32 -7.72 3.59 -58.32 -0.21 -7.93 16 20 C 0.26 6.75 5.99 -5.19 -0.03 6.72 16 21 C -0.54 -14.95 9.39 -34.44 -0.32 -15.27 16 22 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 25 Si 0.91 21.33 29.54 -169.99 -5.02 16.30 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 32 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 33 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 34 H 0.40 2.87 8.49 -40.82 -0.35 2.53 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.22 -0.11 8.06 -52.49 -0.42 -0.54 16 42 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -37.83 381.39 -11.09 -48.92 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.16 Total: 4.07 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -5.71 Total: 2.29 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: 0.98 Total: -66.90 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.83 -11.09 -48.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345971606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.133 kcal (2) G-P(sol) polarization free energy of solvation -37.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds