Wall clock time and date at job start Tue Mar 31 2020 18:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35247 * 126.06970 * 2 1 4 4 C 1.40403 * 107.86349 * 180.15996 * 3 2 1 5 5 N 1.40197 * 125.96872 * 179.83235 * 4 3 2 6 6 C 1.34775 * 120.00195 * 359.71063 * 5 4 3 7 7 O 1.21595 * 119.99952 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00179 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00237 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 N 1.33241 * 125.52671 * 269.69903 * 12 11 10 14 14 C 1.30831 * 109.82677 * 179.85560 * 13 12 11 15 15 N 1.34425 * 108.07738 * 0.39700 * 14 13 12 16 16 H 0.97001 * 126.82292 * 179.78979 * 15 14 13 17 17 N 1.30717 * 125.52587 * 89.99840 * 12 11 10 18 18 N 1.31209 * 108.05510 * 359.56532 * 4 3 2 19 19 N 1.34956 * 126.06901 * 179.68361 * 2 1 3 20 20 C 1.46506 * 125.97937 * 359.97438 * 19 2 1 21 21 C 1.50703 * 109.47194 * 270.00414 * 20 19 2 22 22 H 1.07999 * 119.99584 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99987 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00117 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99921 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47098 * 59.99941 * 25 23 21 27 27 H 1.48501 * 109.47232 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47331 * 299.99987 * 25 23 21 29 29 H 1.09000 * 109.47489 * 270.32091 * 1 2 3 30 30 H 1.09005 * 109.47420 * 30.31658 * 1 2 3 31 31 H 1.09001 * 109.47517 * 150.32030 * 1 2 3 32 32 H 1.07997 * 126.06595 * 359.97438 * 3 2 1 33 33 H 0.96996 * 119.99762 * 179.71793 * 5 4 3 34 34 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 35 35 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 36 36 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 37 37 H 1.09000 * 109.47050 * 299.99945 * 10 9 8 38 38 H 1.09001 * 109.46801 * 60.00058 * 10 9 8 39 39 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 40 40 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 41 41 H 1.08001 * 125.95893 * 180.12539 * 14 13 12 42 42 H 1.09000 * 109.47000 * 30.00013 * 20 19 2 43 43 H 1.08994 * 109.46949 * 150.00029 * 20 19 2 44 44 H 0.96998 * 120.00323 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0037 5 7 4.7738 1.4751 -0.0083 6 6 4.6370 2.8159 -0.0153 7 8 3.5277 3.3139 -0.0171 8 7 5.7297 3.6047 -0.0191 9 6 5.5811 5.0621 -0.0261 10 6 6.9644 5.7159 -0.0300 11 6 6.8091 7.2379 -0.0379 12 6 8.1717 7.8819 -0.0411 13 7 8.8691 8.2235 1.0416 14 6 10.0099 8.7554 0.6850 15 7 10.0607 8.7719 -0.6582 16 1 10.7842 9.1106 -1.2085 17 7 8.8586 8.2008 -1.1065 18 7 3.6336 -0.6575 0.0036 19 7 2.3016 -1.0908 0.0060 20 6 1.8500 -2.4846 0.0143 21 6 1.6956 -2.9542 1.4379 22 1 1.9126 -2.2819 2.2548 23 6 1.2774 -4.2421 1.6974 24 7 1.0127 -5.0606 0.7026 25 14 1.0867 -4.8244 3.4620 26 1 0.0868 -3.9753 4.1581 27 1 0.6277 -6.2367 3.4704 28 1 2.3933 -4.7240 4.1604 29 1 -0.3634 0.0058 1.0276 30 1 -0.3634 0.8872 -0.5188 31 1 -0.3634 -0.8928 -0.5088 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0779 -0.0065 34 1 6.6147 3.2074 -0.0172 35 1 5.0331 5.3758 0.8623 36 1 5.0330 5.3672 -0.9175 37 1 7.5129 5.4108 0.8613 38 1 7.5120 5.4022 -0.9187 39 1 6.2608 7.5426 -0.9294 40 1 6.2614 7.5519 0.8506 41 1 10.7753 9.1216 1.3532 42 1 0.8912 -2.5588 -0.4988 43 1 2.5845 -3.1074 -0.4962 44 1 0.7188 -5.9668 0.8852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345971606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:19 Heat of formation + Delta-G solvation = 102.847351 kcal Electronic energy + Delta-G solvation = -26477.608635 eV Core-core repulsion = 22467.511678 eV Total energy + Delta-G solvation = -4010.096957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.02342 -42.27626 -40.89928 -37.27501 -36.19507 -35.30243 -34.74391 -33.15331 -32.80215 -32.55791 -31.61260 -28.67853 -27.86344 -27.47019 -25.00304 -23.80388 -23.28790 -22.59506 -21.38980 -21.19172 -20.87718 -19.21326 -18.99484 -18.73567 -17.75944 -17.19635 -17.03285 -16.46011 -16.40494 -16.23163 -16.02702 -15.74353 -15.54020 -15.29665 -14.69059 -14.34568 -14.27948 -13.77355 -13.72900 -13.55839 -13.37770 -13.35733 -13.10627 -13.05650 -12.82841 -12.64150 -12.42248 -12.22233 -12.10551 -11.82702 -11.55206 -11.33651 -11.14118 -11.04364 -11.01499 -10.71407 -10.63911 -10.15973 -9.53176 -9.04467 -8.30371 -6.48316 0.68607 1.04975 1.15217 1.39605 1.41129 1.50225 1.70052 1.86135 1.91673 2.13733 2.37224 2.42718 2.98874 3.12491 3.29102 3.72073 3.88635 4.01109 4.13706 4.19883 4.24165 4.34011 4.47274 4.67117 4.71056 4.74720 4.77648 4.87888 4.92171 5.00344 5.04614 5.15680 5.18091 5.21669 5.24558 5.29489 5.42912 5.54124 5.55846 5.83402 5.90301 6.00741 6.28093 6.29961 6.63594 6.78214 7.14538 7.16292 7.22478 7.46281 8.74998 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.001611 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.751795 B =17379.440856 C =17815.518217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.710 3.290 7 O -0.600 6.600 8 N -0.723 5.723 9 C 0.142 3.858 10 C -0.105 4.105 11 C -0.023 4.023 12 C 0.219 3.781 13 N -0.580 5.580 14 C 0.274 3.726 15 N -0.479 5.479 16 H 0.457 0.543 17 N -0.348 5.348 18 N -0.361 5.361 19 N -0.344 5.344 20 C 0.275 3.725 21 C -0.554 4.554 22 H 0.049 0.951 23 C 0.024 3.976 24 N -0.918 5.918 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.421 0.579 34 H 0.413 0.587 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.269 0.731 42 H 0.052 0.948 43 H 0.024 0.976 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.702 28.158 -1.832 33.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.329 4.329 4 C 0.037 3.963 5 N -0.288 5.288 6 C 0.410 3.590 7 O -0.478 6.478 8 N -0.380 5.380 9 C 0.018 3.982 10 C -0.144 4.144 11 C -0.063 4.063 12 C -0.063 4.063 13 N -0.309 5.309 14 C -0.025 4.025 15 N -0.198 5.198 16 H 0.305 0.695 17 N -0.178 5.178 18 N -0.192 5.192 19 N -0.126 5.126 20 C 0.157 3.843 21 C -0.592 4.592 22 H 0.068 0.932 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.197 1.197 28 H -0.201 1.201 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.258 0.742 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.284 0.716 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.970 27.143 -2.274 32.091 hybrid contribution 1.141 -0.115 0.438 1.228 sum 18.111 27.028 -1.836 32.586 Atomic orbital electron populations 1.20464 0.85383 1.04178 1.03918 1.21734 0.96633 0.86457 0.99524 1.21410 0.89953 0.99888 1.21625 1.18960 0.88127 0.88903 1.00327 1.41390 1.07039 1.03867 1.76553 1.15794 0.85353 0.80063 0.77830 1.90842 1.25261 1.73912 1.57803 1.44880 1.07114 1.06845 1.79111 1.21265 0.97643 0.76477 1.02797 1.21524 0.95740 0.93481 1.03704 1.19856 0.87602 0.93376 1.05511 1.24506 0.98568 0.97628 0.85626 1.70452 1.06562 1.21816 1.32075 1.27029 0.96623 0.94087 0.84725 1.48114 1.16447 1.47535 1.07704 0.69471 1.77952 0.95808 1.20565 1.23494 1.77165 1.00058 1.09762 1.32203 1.48750 1.01671 1.07459 1.54731 1.19235 0.94907 0.72459 0.97741 1.21424 1.47572 0.98424 0.91809 0.93235 1.25720 0.93935 0.95862 1.02239 1.69995 1.45033 1.07393 1.33172 0.85419 0.78714 0.77675 0.78752 1.19039 1.19719 1.20122 0.89857 0.87591 0.91280 0.81597 0.74178 0.75010 0.91318 0.91294 0.90422 0.90659 0.88374 0.88010 0.71571 0.92997 0.95791 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 2 C 0.09 3.77 6.92 41.39 0.29 4.05 16 3 C -0.30 -12.61 9.52 22.11 0.21 -12.40 16 4 C 0.29 12.24 8.11 133.31 1.08 13.32 16 5 N -0.64 -19.90 5.46 -321.23 -1.75 -21.65 16 6 C 0.71 20.68 8.53 179.06 1.53 22.21 16 7 O -0.60 -21.87 13.47 -4.01 -0.05 -21.92 16 8 N -0.72 -13.41 5.56 -478.54 -2.66 -16.07 16 9 C 0.14 2.21 5.67 86.38 0.49 2.70 16 10 C -0.11 -1.20 5.31 30.60 0.16 -1.04 16 11 C -0.02 -0.28 5.84 29.85 0.17 -0.11 16 12 C 0.22 3.50 7.39 138.63 1.03 4.52 16 13 N -0.58 -8.76 11.19 -191.80 -2.15 -10.91 16 14 C 0.27 1.83 13.13 180.36 2.37 4.20 16 15 N -0.48 -3.68 7.45 -60.49 -0.45 -4.13 16 16 H 0.46 0.12 8.96 -213.10 -1.91 -1.79 16 17 N -0.35 -5.58 12.80 -51.33 -0.66 -6.24 16 18 N -0.36 -17.36 12.59 -54.43 -0.69 -18.04 16 19 N -0.34 -17.02 3.59 -338.44 -1.22 -18.23 16 20 C 0.28 14.82 5.99 85.63 0.51 15.33 16 21 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 22 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 23 C 0.02 1.30 5.46 84.65 0.46 1.76 16 24 N -0.92 -52.26 13.29 21.45 0.28 -51.97 16 25 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 31 H 0.07 2.41 7.07 -2.39 -0.02 2.40 16 32 H 0.17 6.84 5.91 -2.91 -0.02 6.83 16 33 H 0.42 10.30 8.84 -92.71 -0.82 9.48 16 34 H 0.41 5.10 8.49 -92.70 -0.79 4.31 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.27 -1.24 8.06 -2.91 -0.02 -1.26 16 42 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 43 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -82.72 381.39 -0.49 -83.21 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -2.44 Total: 19.26 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 9.26 Total: 21.21 kcal Atomic # 7 Polarization: -137.96 SS G_CDS: -9.28 Total: -147.24 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -82.72 -0.49 -83.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345971606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.056 kcal (2) G-P(sol) polarization free energy of solvation -82.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds