Wall clock time and date at job start Tue Mar 31 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46819 * 179.97438 * 10 9 8 12 12 N 1.30716 * 125.52774 * 269.69099 * 11 10 9 13 13 N 1.40447 * 106.79565 * 179.86057 * 12 11 10 14 14 H 0.96991 * 126.82287 * 180.16126 * 13 12 11 15 15 C 1.34438 * 106.34858 * 0.39748 * 13 12 11 16 16 C 1.50699 * 125.95556 * 179.73456 * 15 13 12 17 17 N 1.30830 * 108.07891 * 359.75592 * 15 13 12 18 18 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97468 * 359.94647 * 19 2 1 21 21 C 1.50702 * 109.47635 * 89.99791 * 20 19 2 22 22 H 1.07999 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99972 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99519 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00229 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46756 * 89.99914 * 25 23 21 27 27 H 1.48499 * 109.47184 * 210.00000 * 25 23 21 28 28 H 1.48498 * 109.47225 * 330.00250 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 34 34 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 36 36 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 37 37 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 38 38 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 39 39 H 1.08998 * 109.47184 * 270.00082 * 16 15 13 40 40 H 1.09000 * 109.47433 * 30.00593 * 16 15 13 41 41 H 1.09003 * 109.46830 * 149.99755 * 16 15 13 42 42 H 1.09001 * 109.47030 * 210.00125 * 20 19 2 43 43 H 1.09005 * 109.47259 * 329.99077 * 20 19 2 44 44 H 0.96997 * 119.99511 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 6 6.8116 7.2151 0.0310 12 7 6.7390 7.9762 -1.0292 13 7 6.5988 9.2967 -0.5720 14 1 6.5170 10.0949 -1.1168 15 6 6.6060 9.2350 0.7710 16 6 6.4875 10.4067 1.7113 17 7 6.7341 7.9803 1.1190 18 7 3.6337 -0.6575 -0.0044 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0124 21 6 1.6941 -2.9555 -1.4354 22 1 1.9094 -2.2838 -2.2532 23 6 1.2765 -4.2440 -1.6933 24 7 1.1408 -4.6551 -2.9351 25 14 0.9048 -5.4061 -0.2788 26 1 -0.5258 -5.2830 0.1000 27 1 1.1876 -6.8024 -0.6979 28 1 1.7570 -5.0566 0.8860 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0037 34 1 6.6148 3.2075 0.0131 35 1 5.0323 5.3759 -0.8654 36 1 5.0339 5.3670 0.9146 37 1 7.5137 5.4022 0.9118 38 1 7.5114 5.4109 -0.8682 39 1 7.4813 10.7930 1.9373 40 1 5.8911 11.1896 1.2429 41 1 6.0043 10.0847 2.6338 42 1 2.5851 -3.1070 0.4978 43 1 0.8919 -2.5584 0.5019 44 1 0.8467 -5.5614 -3.1165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352815548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:12 Heat of formation + Delta-G solvation = 135.838329 kcal Electronic energy + Delta-G solvation = -26715.452561 eV Core-core repulsion = 22706.786200 eV Total energy + Delta-G solvation = -4008.666361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.60744 -40.77138 -39.61914 -36.11042 -34.72750 -33.79475 -33.21903 -32.83353 -31.57789 -31.09052 -30.40632 -28.34532 -27.03806 -26.34054 -24.49778 -22.60200 -21.86217 -21.47123 -20.85457 -19.84304 -19.52382 -18.35324 -17.70025 -17.07848 -16.60660 -16.10509 -15.89483 -15.57855 -15.08179 -14.83381 -14.55254 -14.35847 -14.09363 -13.89427 -13.68254 -13.54454 -13.26233 -13.07657 -12.53753 -12.41255 -12.36936 -12.32951 -12.26119 -11.96075 -11.82083 -11.49730 -11.14392 -10.77977 -10.53857 -10.52602 -10.47059 -10.02381 -9.93051 -9.91770 -9.68397 -9.54189 -9.21638 -8.75796 -7.92582 -7.38531 -6.23482 -4.26387 1.10497 2.10956 2.26671 2.51219 2.63227 3.10736 3.16740 3.24601 3.25974 3.41423 3.63858 3.84512 4.08321 4.24142 4.26425 4.40006 4.59529 4.67362 4.81363 5.01806 5.04835 5.10666 5.22218 5.38097 5.62158 5.65504 5.69837 5.78336 5.92028 5.94961 6.07891 6.20986 6.26021 6.42087 6.51309 6.54144 6.56025 6.66092 6.83657 7.08807 7.32500 7.51525 7.63199 7.91648 7.95107 8.35115 8.61759 8.65574 8.82807 9.31913 10.89051 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.034205 B = 0.001699 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.400397 B =16472.360275 C =16677.886458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.285 4.285 4 C 0.287 3.713 5 N -0.643 5.643 6 C 0.715 3.285 7 O -0.565 6.565 8 N -0.743 5.743 9 C 0.150 3.850 10 C -0.038 4.038 11 C 0.236 3.764 12 N -0.308 5.308 13 N -0.483 5.483 14 H 0.441 0.559 15 C 0.284 3.716 16 C -0.079 4.079 17 N -0.535 5.535 18 N -0.321 5.321 19 N -0.319 5.319 20 C 0.232 3.768 21 C -0.541 4.541 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.887 5.887 25 Si 0.873 3.127 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.407 0.593 34 H 0.398 0.602 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 28.359 9.234 32.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.033 3.967 5 N -0.293 5.293 6 C 0.414 3.586 7 O -0.440 6.440 8 N -0.400 5.400 9 C 0.024 3.976 10 C -0.078 4.078 11 C -0.048 4.048 12 N -0.137 5.137 13 N -0.201 5.201 14 H 0.287 0.713 15 C 0.006 3.994 16 C -0.138 4.138 17 N -0.265 5.265 18 N -0.151 5.151 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.579 4.579 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.524 5.524 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.242 0.758 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.511 27.068 8.733 30.683 hybrid contribution 0.285 0.257 0.131 0.406 sum 11.796 27.325 8.863 31.054 Atomic orbital electron populations 1.20400 0.87902 1.04142 1.02413 1.21050 0.94880 0.86972 1.00787 1.21267 0.89705 0.99883 1.20784 1.18646 0.86644 0.89179 1.02226 1.41365 1.07587 1.03689 1.76685 1.15555 0.84667 0.80353 0.78055 1.90883 1.23543 1.73461 1.56074 1.44887 1.07755 1.06196 1.81210 1.21016 0.95442 0.77712 1.03412 1.20075 0.98364 0.84149 1.05235 1.23854 0.97905 0.97360 0.85642 1.78059 1.26143 0.87256 1.22214 1.48005 1.57117 1.08580 1.06404 0.71345 1.24451 0.95477 0.95388 0.84116 1.20424 1.04397 0.91386 0.97602 1.70385 1.24997 1.00195 1.30881 1.77243 0.99399 1.08443 1.30048 1.48473 1.01181 1.06928 1.53503 1.19971 0.95250 0.73850 0.99621 1.21203 1.47248 0.99000 0.90430 0.90095 1.24810 0.94516 0.97455 0.95760 1.69877 1.45727 1.18301 1.18484 0.86903 0.79426 0.80982 0.82840 1.19628 1.20541 1.18786 0.91120 0.89892 0.90387 0.82051 0.75822 0.76788 0.91023 0.90720 0.88053 0.88514 0.88892 0.89746 0.88127 0.93254 0.93692 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 2 C 0.09 1.99 6.93 -82.28 -0.57 1.42 16 3 C -0.29 -6.01 9.52 -39.83 -0.38 -6.39 16 4 C 0.29 5.93 8.11 -154.36 -1.25 4.68 16 5 N -0.64 -10.12 5.46 -15.51 -0.08 -10.20 16 6 C 0.71 10.80 8.53 -86.92 -0.74 10.06 16 7 O -0.56 -10.66 13.47 5.28 0.07 -10.59 16 8 N -0.74 -7.51 5.56 -65.22 -0.36 -7.87 16 9 C 0.15 1.47 5.66 -4.04 -0.02 1.45 16 10 C -0.04 -0.28 5.96 -27.88 -0.17 -0.45 16 11 C 0.24 2.31 7.39 -156.85 -1.16 1.15 16 12 N -0.31 -3.08 12.80 32.42 0.41 -2.66 16 13 N -0.48 -3.22 7.45 32.62 0.24 -2.97 16 14 H 0.44 1.31 8.96 -182.34 -1.63 -0.32 16 15 C 0.28 1.93 8.24 -155.69 -1.28 0.65 16 16 C -0.08 -0.17 10.51 36.01 0.38 0.21 16 17 N -0.53 -5.24 11.19 -8.16 -0.09 -5.33 16 18 N -0.32 -7.42 12.59 31.44 0.40 -7.02 16 19 N -0.32 -7.52 3.59 -58.32 -0.21 -7.73 16 20 C 0.23 5.66 4.88 -5.20 -0.03 5.63 16 21 C -0.54 -15.29 9.94 -34.44 -0.34 -15.63 16 22 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 23 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 24 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 25 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.16 3.36 5.91 -52.49 -0.31 3.05 16 33 H 0.41 5.00 8.84 -40.82 -0.36 4.64 16 34 H 0.40 2.62 8.49 -40.82 -0.35 2.27 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 40 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 43 H 0.05 1.01 7.08 -51.93 -0.37 0.64 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -38.99 379.13 -10.30 -49.29 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.19 Total: 5.82 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -5.30 Total: 3.70 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: 1.08 Total: -69.54 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.99 -10.30 -49.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352815548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.129 kcal (2) G-P(sol) polarization free energy of solvation -38.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds