Wall clock time and date at job start Tue Mar 31 2020 18:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46819 * 179.97438 * 10 9 8 12 12 N 1.30716 * 125.52774 * 269.69099 * 11 10 9 13 13 N 1.40447 * 106.79565 * 179.86057 * 12 11 10 14 14 H 0.96991 * 126.82287 * 180.16126 * 13 12 11 15 15 C 1.34438 * 106.34858 * 0.39748 * 13 12 11 16 16 C 1.50699 * 125.95556 * 179.73456 * 15 13 12 17 17 N 1.30830 * 108.07891 * 359.75592 * 15 13 12 18 18 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97468 * 359.94647 * 19 2 1 21 21 C 1.50702 * 109.47635 * 89.99791 * 20 19 2 22 22 H 1.07999 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99972 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99519 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00229 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46756 * 89.99914 * 25 23 21 27 27 H 1.48499 * 109.47184 * 210.00000 * 25 23 21 28 28 H 1.48498 * 109.47225 * 330.00250 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 34 34 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 36 36 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 37 37 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 38 38 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 39 39 H 1.08998 * 109.47184 * 270.00082 * 16 15 13 40 40 H 1.09000 * 109.47433 * 30.00593 * 16 15 13 41 41 H 1.09003 * 109.46830 * 149.99755 * 16 15 13 42 42 H 1.09001 * 109.47030 * 210.00125 * 20 19 2 43 43 H 1.09005 * 109.47259 * 329.99077 * 20 19 2 44 44 H 0.96997 * 119.99511 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 6 6.8116 7.2151 0.0310 12 7 6.7390 7.9762 -1.0292 13 7 6.5988 9.2967 -0.5720 14 1 6.5170 10.0949 -1.1168 15 6 6.6060 9.2350 0.7710 16 6 6.4875 10.4067 1.7113 17 7 6.7341 7.9803 1.1190 18 7 3.6337 -0.6575 -0.0044 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0124 21 6 1.6941 -2.9555 -1.4354 22 1 1.9094 -2.2838 -2.2532 23 6 1.2765 -4.2440 -1.6933 24 7 1.1408 -4.6551 -2.9351 25 14 0.9048 -5.4061 -0.2788 26 1 -0.5258 -5.2830 0.1000 27 1 1.1876 -6.8024 -0.6979 28 1 1.7570 -5.0566 0.8860 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0037 34 1 6.6148 3.2075 0.0131 35 1 5.0323 5.3759 -0.8654 36 1 5.0339 5.3670 0.9146 37 1 7.5137 5.4022 0.9118 38 1 7.5114 5.4109 -0.8682 39 1 7.4813 10.7930 1.9373 40 1 5.8911 11.1896 1.2429 41 1 6.0043 10.0847 2.6338 42 1 2.5851 -3.1070 0.4978 43 1 0.8919 -2.5584 0.5019 44 1 0.8467 -5.5614 -3.1165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352815548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:11 Heat of formation + Delta-G solvation = 106.149865 kcal Electronic energy + Delta-G solvation = -26716.739949 eV Core-core repulsion = 22706.786200 eV Total energy + Delta-G solvation = -4009.953750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.18625 -42.32456 -40.95343 -37.08369 -36.18735 -35.24621 -34.45317 -33.37591 -33.16795 -32.77490 -31.23625 -29.03236 -28.66475 -27.86826 -25.50921 -24.36671 -22.79777 -22.40222 -21.65848 -21.21873 -20.97247 -19.21338 -19.13094 -18.77468 -17.84010 -17.28982 -16.98106 -16.76492 -16.38318 -16.08026 -15.81134 -15.51126 -15.38293 -14.89274 -14.83712 -14.52134 -14.34434 -13.86804 -13.81620 -13.73322 -13.65330 -13.58507 -13.25783 -13.06830 -12.84694 -12.79543 -12.55635 -12.49436 -12.24986 -11.82621 -11.59277 -11.41634 -11.20004 -11.12671 -11.10313 -10.87744 -10.52099 -10.25638 -9.56322 -9.03557 -8.38889 -6.50079 0.53190 0.98107 1.07603 1.36601 1.39478 1.49578 1.65022 1.70398 1.75924 2.08661 2.28466 2.38077 2.92731 2.94727 3.24210 3.58882 3.82697 3.88777 3.92208 4.11415 4.15690 4.43892 4.47336 4.56911 4.65652 4.71540 4.74054 4.78866 4.83537 4.89909 4.93701 5.02179 5.08333 5.12738 5.19569 5.23283 5.25158 5.36053 5.40068 5.85409 5.90941 6.02890 6.18426 6.39387 6.53711 6.72813 7.04864 7.11453 7.14119 7.41492 8.77823 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.034205 B = 0.001699 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.400397 B =16472.360275 C =16677.886458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.299 4.299 4 C 0.294 3.706 5 N -0.633 5.633 6 C 0.712 3.288 7 O -0.603 6.603 8 N -0.717 5.717 9 C 0.158 3.842 10 C -0.028 4.028 11 C 0.222 3.778 12 N -0.341 5.341 13 N -0.476 5.476 14 H 0.455 0.545 15 C 0.287 3.713 16 C -0.076 4.076 17 N -0.570 5.570 18 N -0.356 5.356 19 N -0.343 5.343 20 C 0.242 3.758 21 C -0.551 4.551 22 H 0.023 0.977 23 C 0.021 3.979 24 N -0.938 5.938 25 Si 0.952 3.048 26 H -0.250 1.250 27 H -0.278 1.278 28 H -0.244 1.244 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.164 0.836 33 H 0.424 0.576 34 H 0.419 0.581 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.253 29.439 11.487 33.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.330 4.330 4 C 0.039 3.961 5 N -0.286 5.286 6 C 0.411 3.589 7 O -0.481 6.481 8 N -0.374 5.374 9 C 0.032 3.968 10 C -0.068 4.068 11 C -0.061 4.061 12 N -0.171 5.171 13 N -0.196 5.196 14 H 0.304 0.696 15 C 0.009 3.991 16 C -0.135 4.135 17 N -0.301 5.301 18 N -0.186 5.186 19 N -0.126 5.126 20 C 0.122 3.878 21 C -0.589 4.589 22 H 0.041 0.959 23 C -0.178 4.178 24 N -0.576 5.576 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.204 1.204 28 H -0.167 1.167 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.182 0.818 33 H 0.261 0.739 34 H 0.257 0.743 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.982 28.214 10.979 32.559 hybrid contribution 0.228 0.162 -0.660 0.717 sum 12.210 28.375 10.318 32.569 Atomic orbital electron populations 1.20543 0.85205 1.04382 1.04488 1.21739 0.96701 0.86343 0.99170 1.21427 0.90150 0.99949 1.21505 1.18942 0.88088 0.88932 1.00170 1.41323 1.07176 1.03644 1.76414 1.15742 0.85196 0.80161 0.77760 1.90852 1.25460 1.73992 1.57749 1.44663 1.07521 1.06010 1.79242 1.20933 0.96869 0.77088 1.01885 1.20044 0.96797 0.83060 1.06855 1.24180 0.98007 0.98184 0.85742 1.77956 1.27250 0.88706 1.23163 1.47958 1.56655 1.08215 1.06783 0.69608 1.25259 0.93468 0.95774 0.84563 1.20656 1.05949 0.90262 0.96662 1.70389 1.26631 1.01575 1.31472 1.77157 0.99738 1.09647 1.32072 1.48409 1.01781 1.07011 1.55375 1.19769 0.96440 0.74618 0.96954 1.21271 1.47742 0.98738 0.91197 0.95894 1.25840 0.93711 0.99246 0.99022 1.70040 1.46934 1.19188 1.21446 0.85667 0.80501 0.77621 0.78976 1.17429 1.20374 1.16748 0.87971 0.91265 0.88469 0.81833 0.73863 0.74305 0.92749 0.92110 0.86334 0.86951 0.87096 0.87105 0.88237 0.93189 0.90971 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.91 9.89 71.24 0.70 -2.21 16 2 C 0.09 3.82 6.93 41.39 0.29 4.11 16 3 C -0.30 -12.65 9.52 22.11 0.21 -12.44 16 4 C 0.29 12.19 8.11 133.31 1.08 13.27 16 5 N -0.63 -19.57 5.46 -321.23 -1.75 -21.32 16 6 C 0.71 21.12 8.53 179.06 1.53 22.65 16 7 O -0.60 -22.82 13.47 -4.02 -0.05 -22.87 16 8 N -0.72 -13.59 5.56 -478.52 -2.66 -16.25 16 9 C 0.16 3.01 5.66 86.38 0.49 3.50 16 10 C -0.03 -0.38 5.96 29.85 0.18 -0.20 16 11 C 0.22 4.23 7.39 138.63 1.03 5.26 16 12 N -0.34 -6.68 12.80 -51.33 -0.66 -7.34 16 13 N -0.48 -5.88 7.45 -50.70 -0.38 -6.25 16 14 H 0.46 2.15 8.96 -213.11 -1.91 0.24 16 15 C 0.29 3.54 8.24 138.22 1.14 4.68 16 16 C -0.08 -0.16 10.51 71.24 0.75 0.59 16 17 N -0.57 -10.76 11.19 -179.72 -2.01 -12.77 16 18 N -0.36 -16.62 12.59 -54.44 -0.69 -17.31 16 19 N -0.34 -16.32 3.59 -338.44 -1.22 -17.53 16 20 C 0.24 11.71 4.88 85.63 0.42 12.13 16 21 C -0.55 -32.08 9.94 25.60 0.25 -31.83 16 22 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 23 C 0.02 1.22 5.47 84.66 0.46 1.68 16 24 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 25 Si 0.95 41.12 27.47 68.60 1.88 43.00 16 26 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.48 7.71 -2.39 -0.02 2.47 16 31 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.16 6.84 5.91 -2.91 -0.02 6.83 16 33 H 0.42 9.95 8.84 -92.71 -0.82 9.13 16 34 H 0.42 4.59 8.49 -92.70 -0.79 3.80 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.11 -0.35 8.14 -2.39 -0.02 -0.36 16 41 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.05 2.40 7.20 -2.39 -0.02 2.38 16 43 H 0.07 3.08 7.08 -2.38 -0.02 3.07 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -88.78 379.13 -1.20 -89.97 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -2.49 Total: 24.72 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 8.52 Total: 21.20 kcal Atomic # 7 Polarization: -146.97 SS G_CDS: -9.06 Total: -156.03 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.88 Total: 43.00 kcal Total: -88.78 -1.20 -89.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352815548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.122 kcal (2) G-P(sol) polarization free energy of solvation -88.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds