Wall clock time and date at job start Tue Mar 31 2020 19:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34710 * 116.99992 * 2 1 4 4 O 1.21464 * 119.99949 * 0.02562 * 3 2 1 5 5 C 1.47733 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.39641 * 120.15129 * 5.70523 * 5 3 2 7 7 C 1.37921 * 119.85006 * 180.31860 * 6 5 3 8 8 C 1.38396 * 120.14969 * 359.65916 * 7 6 5 9 9 C 1.38348 * 120.29806 * 359.97438 * 8 7 6 10 10 C 1.37966 * 120.15436 * 0.04755 * 9 8 7 11 11 C 1.50698 * 120.07863 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46826 * 100.39532 * 11 10 9 13 13 O 1.21276 * 120.00136 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99830 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99561 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46732 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47515 * 300.00512 * 16 15 14 18 18 C 1.52996 * 109.46894 * 60.00534 * 16 15 14 19 19 C 1.52997 * 109.47082 * 180.02562 * 16 15 14 20 20 C 1.50699 * 109.47566 * 180.02562 * 19 16 15 21 21 H 1.08008 * 119.99533 * 0.02562 * 20 19 16 22 22 C 1.37878 * 120.00619 * 180.02562 * 20 19 16 23 23 N 1.31514 * 119.99772 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00115 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47540 * 59.99532 * 24 22 20 26 26 H 1.48501 * 109.46964 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46883 * 299.99730 * 24 22 20 28 28 H 1.08994 * 109.47346 * 60.00289 * 1 2 3 29 29 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46937 * 299.99900 * 1 2 3 31 31 H 1.08001 * 120.07989 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.93096 * 179.68009 * 7 6 5 33 33 H 1.07997 * 119.85159 * 180.02562 * 8 7 6 34 34 H 1.08002 * 119.92422 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47390 * 340.40141 * 11 10 9 36 36 H 1.08993 * 109.47116 * 220.39475 * 11 10 9 37 37 H 0.96994 * 119.99621 * 359.97438 * 14 12 11 38 38 H 1.08990 * 109.47644 * 300.00387 * 15 14 12 39 39 H 1.09001 * 109.47224 * 60.00639 * 15 14 12 40 40 H 1.08996 * 109.47416 * 59.99440 * 17 16 15 41 41 H 1.09002 * 109.47156 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.46587 * 299.99624 * 17 16 15 43 43 H 1.09003 * 109.47322 * 59.99728 * 18 16 15 44 44 H 1.09005 * 109.47412 * 179.97438 * 18 16 15 45 45 H 1.09000 * 109.47096 * 299.99671 * 18 16 15 46 46 H 1.09000 * 109.47490 * 300.00774 * 19 16 15 47 47 H 1.09000 * 109.47337 * 60.00182 * 19 16 15 48 48 H 0.97002 * 120.00122 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3021 0.1144 -0.1211 7 6 5.6790 0.1931 -0.1143 8 6 6.3045 1.4220 0.0045 9 6 5.5543 2.5790 0.1167 10 6 4.1762 2.5146 0.1118 11 6 3.3607 3.7760 0.2347 12 6 2.8720 4.1930 -1.1286 13 8 3.1574 3.5309 -2.1038 14 7 2.1170 5.3012 -1.2639 15 6 1.6424 5.7068 -2.5892 16 6 0.8133 6.9866 -2.4643 17 6 -0.3859 6.7302 -1.5495 18 6 1.6793 8.0992 -1.8701 19 6 0.3172 7.4100 -3.8483 20 6 -0.4989 8.6709 -3.7254 21 1 -0.6484 9.1252 -2.7570 22 6 -1.0548 9.2446 -4.8492 23 7 -0.8724 8.6918 -6.0285 24 14 -2.0658 10.8080 -4.6969 25 1 -1.2242 11.8877 -4.1218 26 1 -2.5485 11.2181 -6.0400 27 1 -3.2291 10.5604 -3.8077 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8154 -0.8452 -0.2139 32 1 6.2706 -0.7061 -0.2023 33 1 7.3830 1.4781 0.0089 34 1 6.0487 3.5348 0.2088 35 1 3.9785 4.5684 0.6572 36 1 2.5066 3.5943 0.8869 37 1 1.8878 5.8301 -0.4838 38 1 2.4967 5.8890 -3.2410 39 1 1.0251 4.9144 -3.0123 40 1 -0.0329 6.4284 -0.5635 41 1 -0.9768 7.6419 -1.4609 42 1 -1.0029 5.9376 -1.9729 43 1 2.5337 8.2819 -2.5218 44 1 1.0888 9.0112 -1.7815 45 1 2.0324 7.7974 -0.8841 46 1 1.1713 7.5925 -4.5004 47 1 -0.2999 6.6172 -4.2712 48 1 -1.2638 9.0952 -6.8190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359759449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:58 Heat of formation + Delta-G solvation = -109.747234 kcal Electronic energy + Delta-G solvation = -28900.533009 eV Core-core repulsion = 24920.172100 eV Total energy + Delta-G solvation = -3980.360909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98133 -39.54221 -38.75539 -37.01173 -36.53345 -33.47083 -32.93968 -31.99168 -31.76120 -28.57191 -27.73557 -26.98785 -26.45182 -25.72183 -24.12279 -22.95579 -22.10920 -21.07220 -20.01599 -18.33021 -18.03649 -17.14342 -16.80540 -16.40154 -16.29103 -16.09022 -15.71351 -15.18322 -14.82234 -14.67284 -14.46841 -13.87097 -13.76015 -13.48320 -13.35689 -13.30492 -12.93852 -12.70837 -12.54035 -12.37590 -12.32552 -12.02636 -11.97986 -11.81206 -11.39048 -11.08278 -10.96549 -10.93533 -10.84415 -10.58570 -10.34828 -10.30716 -10.22669 -9.81932 -9.70282 -9.26736 -9.19074 -8.98031 -8.86933 -8.56394 -8.32981 -5.97083 -3.98274 0.49748 1.07354 2.38836 2.51887 3.05159 3.33636 3.38631 3.39007 3.41116 3.79080 4.41306 4.44467 4.47578 4.62256 4.71459 4.93599 5.00575 5.03600 5.13040 5.15604 5.29882 5.35236 5.38229 5.44745 5.56790 5.60486 5.70107 5.73230 5.81934 5.98225 6.07221 6.15026 6.24139 6.30574 6.31456 6.37192 6.47520 6.57810 6.66618 6.68392 6.88034 7.11779 7.13016 7.19086 7.60465 7.67647 7.80788 7.90634 8.02028 8.43913 8.61493 9.06374 9.64481 11.14431 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.002526 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.612603 B =11084.061018 C =11860.067021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.507 3.493 4 O -0.493 6.493 5 C -0.112 4.112 6 C -0.062 4.062 7 C -0.137 4.137 8 C -0.082 4.082 9 C -0.123 4.123 10 C 0.006 3.994 11 C -0.116 4.116 12 C 0.530 3.470 13 O -0.547 6.547 14 N -0.720 5.720 15 C 0.132 3.868 16 C -0.072 4.072 17 C -0.126 4.126 18 C -0.126 4.126 19 C 0.037 3.963 20 C -0.511 4.511 21 H 0.059 0.941 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.397 0.603 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.029 0.971 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.399 -17.539 17.570 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.352 3.648 4 O -0.381 6.381 5 C -0.113 4.113 6 C -0.080 4.080 7 C -0.155 4.155 8 C -0.100 4.100 9 C -0.141 4.141 10 C 0.005 3.995 11 C -0.155 4.155 12 C 0.315 3.685 13 O -0.425 6.425 14 N -0.371 5.371 15 C 0.009 3.991 16 C -0.073 4.073 17 C -0.183 4.183 18 C -0.183 4.183 19 C -0.001 4.001 20 C -0.549 4.549 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.232 0.768 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.303 -17.690 16.657 26.798 hybrid contribution -0.964 1.165 0.210 1.526 sum 10.339 -16.525 16.866 25.777 Atomic orbital electron populations 1.23282 0.75774 1.03655 1.02918 1.86505 1.23714 1.32745 1.84517 1.21187 0.89106 0.81532 0.72926 1.90822 1.66838 1.35454 1.45023 1.18871 0.89020 0.94552 1.08894 1.21404 0.94000 0.97672 0.94928 1.21131 0.94279 0.98196 1.01915 1.21391 1.00292 0.92356 0.95977 1.21003 0.92382 0.99208 1.01498 1.19406 0.93618 0.92570 0.93922 1.20936 1.01379 0.95328 0.97868 1.19992 0.78101 0.80421 0.89958 1.90679 1.57976 1.53353 1.40508 1.46069 1.52805 1.26980 1.11238 1.21556 0.97845 0.96999 0.82734 1.20894 0.94151 0.92060 1.00157 1.21742 0.97950 1.01955 0.96643 1.21754 0.99378 0.99420 0.97798 1.19079 0.96101 0.96327 0.88586 1.21157 1.31461 1.09042 0.93223 0.92319 1.25015 0.96645 0.97364 0.95496 1.69959 1.45199 1.40041 0.98263 0.86708 0.80644 0.83869 0.77058 1.20333 1.21413 1.20346 0.91545 0.88064 0.91799 0.84543 0.85181 0.85264 0.84995 0.88523 0.86096 0.76833 0.92072 0.92139 0.95155 0.91564 0.93475 0.93431 0.91498 0.95222 0.96407 0.96421 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.15 9.83 -40.52 -0.40 -4.55 16 3 C 0.51 6.92 7.82 34.61 0.27 7.19 16 4 O -0.49 -7.69 12.05 -19.24 -0.23 -7.93 16 5 C -0.11 -1.40 5.77 -104.98 -0.61 -2.00 16 6 C -0.06 -0.61 9.62 -39.17 -0.38 -0.99 16 7 C -0.14 -1.12 10.03 -39.64 -0.40 -1.52 16 8 C -0.08 -0.67 10.04 -39.48 -0.40 -1.07 16 9 C -0.12 -1.21 9.66 -39.64 -0.38 -1.59 16 10 C 0.01 0.07 4.45 -104.21 -0.46 -0.40 16 11 C -0.12 -1.41 5.12 -29.03 -0.15 -1.55 16 12 C 0.53 8.66 6.33 -10.98 -0.07 8.60 16 13 O -0.55 -11.10 15.95 5.56 0.09 -11.01 16 14 N -0.72 -11.47 4.96 -60.30 -0.30 -11.77 16 15 C 0.13 2.51 4.56 -4.04 -0.02 2.49 16 16 C -0.07 -1.43 0.54 -154.51 -0.08 -1.52 16 17 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 18 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 19 C 0.04 0.92 4.04 -27.89 -0.11 0.81 16 20 C -0.51 -13.82 7.65 -34.44 -0.26 -14.08 16 21 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 22 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 23 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 24 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 1.12 7.63 -52.49 -0.40 0.72 16 32 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 1.03 8.03 -52.49 -0.42 0.61 16 35 H 0.10 0.87 8.00 -51.93 -0.42 0.45 16 36 H 0.12 1.46 6.10 -51.93 -0.32 1.14 16 37 H 0.40 5.40 6.16 -40.82 -0.25 5.14 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 41 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 45 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -34.48 390.94 -8.00 -42.48 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.29 Total: 3.33 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.48 Total: -6.78 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.44 Total: -37.90 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.54 Total: -23.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.48 -8.00 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.270 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds