Wall clock time and date at job start Tue Mar 31 2020 19:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34710 * 116.99992 * 2 1 4 4 O 1.21464 * 119.99949 * 0.02562 * 3 2 1 5 5 C 1.47733 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.39641 * 120.15129 * 5.70523 * 5 3 2 7 7 C 1.37921 * 119.85006 * 180.31860 * 6 5 3 8 8 C 1.38396 * 120.14969 * 359.65916 * 7 6 5 9 9 C 1.38348 * 120.29806 * 359.97438 * 8 7 6 10 10 C 1.37966 * 120.15436 * 0.04755 * 9 8 7 11 11 C 1.50698 * 120.07863 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46826 * 100.39532 * 11 10 9 13 13 O 1.21276 * 120.00136 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99830 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99561 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46732 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47515 * 300.00512 * 16 15 14 18 18 C 1.52996 * 109.46894 * 60.00534 * 16 15 14 19 19 C 1.52997 * 109.47082 * 180.02562 * 16 15 14 20 20 C 1.50699 * 109.47566 * 180.02562 * 19 16 15 21 21 H 1.08008 * 119.99533 * 0.02562 * 20 19 16 22 22 C 1.37878 * 120.00619 * 180.02562 * 20 19 16 23 23 N 1.31514 * 119.99772 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00115 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47540 * 59.99532 * 24 22 20 26 26 H 1.48501 * 109.46964 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46883 * 299.99730 * 24 22 20 28 28 H 1.08994 * 109.47346 * 60.00289 * 1 2 3 29 29 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46937 * 299.99900 * 1 2 3 31 31 H 1.08001 * 120.07989 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.93096 * 179.68009 * 7 6 5 33 33 H 1.07997 * 119.85159 * 180.02562 * 8 7 6 34 34 H 1.08002 * 119.92422 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47390 * 340.40141 * 11 10 9 36 36 H 1.08993 * 109.47116 * 220.39475 * 11 10 9 37 37 H 0.96994 * 119.99621 * 359.97438 * 14 12 11 38 38 H 1.08990 * 109.47644 * 300.00387 * 15 14 12 39 39 H 1.09001 * 109.47224 * 60.00639 * 15 14 12 40 40 H 1.08996 * 109.47416 * 59.99440 * 17 16 15 41 41 H 1.09002 * 109.47156 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.46587 * 299.99624 * 17 16 15 43 43 H 1.09003 * 109.47322 * 59.99728 * 18 16 15 44 44 H 1.09005 * 109.47412 * 179.97438 * 18 16 15 45 45 H 1.09000 * 109.47096 * 299.99671 * 18 16 15 46 46 H 1.09000 * 109.47490 * 300.00774 * 19 16 15 47 47 H 1.09000 * 109.47337 * 60.00182 * 19 16 15 48 48 H 0.97002 * 120.00122 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3021 0.1144 -0.1211 7 6 5.6790 0.1931 -0.1143 8 6 6.3045 1.4220 0.0045 9 6 5.5543 2.5790 0.1167 10 6 4.1762 2.5146 0.1118 11 6 3.3607 3.7760 0.2347 12 6 2.8720 4.1930 -1.1286 13 8 3.1574 3.5309 -2.1038 14 7 2.1170 5.3012 -1.2639 15 6 1.6424 5.7068 -2.5892 16 6 0.8133 6.9866 -2.4643 17 6 -0.3859 6.7302 -1.5495 18 6 1.6793 8.0992 -1.8701 19 6 0.3172 7.4100 -3.8483 20 6 -0.4989 8.6709 -3.7254 21 1 -0.6484 9.1252 -2.7570 22 6 -1.0548 9.2446 -4.8492 23 7 -0.8724 8.6918 -6.0285 24 14 -2.0658 10.8080 -4.6969 25 1 -1.2242 11.8877 -4.1218 26 1 -2.5485 11.2181 -6.0400 27 1 -3.2291 10.5604 -3.8077 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8154 -0.8452 -0.2139 32 1 6.2706 -0.7061 -0.2023 33 1 7.3830 1.4781 0.0089 34 1 6.0487 3.5348 0.2088 35 1 3.9785 4.5684 0.6572 36 1 2.5066 3.5943 0.8869 37 1 1.8878 5.8301 -0.4838 38 1 2.4967 5.8890 -3.2410 39 1 1.0251 4.9144 -3.0123 40 1 -0.0329 6.4284 -0.5635 41 1 -0.9768 7.6419 -1.4609 42 1 -1.0029 5.9376 -1.9729 43 1 2.5337 8.2819 -2.5218 44 1 1.0888 9.0112 -1.7815 45 1 2.0324 7.7974 -0.8841 46 1 1.1713 7.5925 -4.5004 47 1 -0.2999 6.6172 -4.2712 48 1 -1.2638 9.0952 -6.8190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359759449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:57 Heat of formation + Delta-G solvation = -130.690774 kcal Electronic energy + Delta-G solvation = -28901.441189 eV Core-core repulsion = 24920.172100 eV Total energy + Delta-G solvation = -3981.269089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91672 -40.75586 -39.69537 -38.56094 -37.52540 -35.21267 -34.05182 -33.62102 -32.50240 -29.64551 -28.96684 -28.50544 -27.98071 -27.14639 -25.05234 -24.70235 -23.02542 -22.02838 -21.25926 -19.88267 -18.94784 -18.39244 -18.15520 -17.94427 -17.34044 -17.09170 -16.74707 -16.54431 -16.22226 -15.90330 -15.56411 -15.17531 -15.07670 -14.69503 -14.48702 -14.41680 -14.21866 -13.98874 -13.95209 -13.85523 -13.37435 -13.13395 -13.00254 -12.81288 -12.76461 -12.69620 -12.57816 -12.34776 -12.23728 -12.08619 -12.01188 -11.83947 -11.55328 -11.25810 -11.17902 -10.92068 -10.79323 -10.52005 -10.02982 -9.98518 -9.78321 -8.14829 -6.23249 -0.30348 0.35808 1.41454 1.44137 1.48565 1.51340 1.68784 1.79348 2.29291 2.44747 2.85144 3.19175 3.59213 3.66022 3.89800 3.92876 4.05753 4.10085 4.12399 4.21233 4.25998 4.28026 4.34348 4.45838 4.55371 4.62509 4.65243 4.68194 4.70947 4.76198 4.84495 4.95139 5.03112 5.09087 5.10745 5.24817 5.30858 5.39774 5.46440 5.47441 5.48081 5.50623 5.51667 5.57610 5.78154 5.88071 5.92083 6.28814 6.64415 6.65147 6.91485 7.34536 7.44509 8.97767 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.002526 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.612603 B =11084.061018 C =11860.067021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.501 3.499 4 O -0.524 6.524 5 C -0.142 4.142 6 C -0.070 4.070 7 C -0.133 4.133 8 C -0.078 4.078 9 C -0.130 4.130 10 C -0.020 4.020 11 C -0.105 4.105 12 C 0.527 3.473 13 O -0.591 6.591 14 N -0.710 5.710 15 C 0.147 3.853 16 C -0.064 4.064 17 C -0.119 4.119 18 C -0.120 4.120 19 C 0.041 3.959 20 C -0.515 4.515 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.940 5.940 24 Si 0.961 3.039 25 H -0.265 1.265 26 H -0.290 1.290 27 H -0.267 1.267 28 H 0.048 0.952 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.412 0.588 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.071 0.929 46 H -0.014 1.014 47 H -0.019 1.019 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.894 -17.475 20.441 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.348 3.652 4 O -0.415 6.415 5 C -0.143 4.143 6 C -0.088 4.088 7 C -0.151 4.151 8 C -0.096 4.096 9 C -0.148 4.148 10 C -0.021 4.021 11 C -0.144 4.144 12 C 0.315 3.685 13 O -0.472 6.472 14 N -0.362 5.362 15 C 0.022 3.978 16 C -0.064 4.064 17 C -0.176 4.176 18 C -0.177 4.177 19 C 0.004 3.996 20 C -0.553 4.553 21 H 0.092 0.908 22 C -0.203 4.203 23 N -0.581 5.581 24 Si 0.786 3.214 25 H -0.189 1.189 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.249 0.751 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.004 0.996 47 H -0.001 1.001 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.800 -17.630 19.583 29.294 hybrid contribution -1.371 1.003 -0.710 1.841 sum 11.429 -16.627 18.873 27.628 Atomic orbital electron populations 1.23521 0.74576 1.05765 1.02255 1.86503 1.24953 1.31980 1.84097 1.21632 0.89910 0.81557 0.72145 1.90781 1.67611 1.36338 1.46804 1.19090 0.88500 0.95900 1.10822 1.21647 0.94977 0.97391 0.94750 1.21556 0.93692 0.99651 1.00191 1.21846 1.01967 0.91702 0.94041 1.21342 0.91597 1.00907 1.00959 1.19591 0.94738 0.92247 0.95546 1.20896 1.02057 0.96758 0.94704 1.20795 0.77029 0.79417 0.91273 1.90653 1.59499 1.54529 1.42499 1.45888 1.52708 1.27414 1.10226 1.21113 0.96629 0.95723 0.84317 1.20701 0.95271 0.93102 0.97345 1.21669 0.96926 1.01069 0.97983 1.21681 0.98400 0.97985 0.99645 1.18955 0.94279 0.95087 0.91310 1.21558 1.30786 1.09174 0.93748 0.90841 1.25984 0.98104 1.01057 0.95142 1.70126 1.46774 1.42008 0.99180 0.85561 0.79195 0.79645 0.77021 1.18934 1.21633 1.19186 0.93270 0.84582 0.91409 0.83515 0.82024 0.81960 0.83027 0.84882 0.86046 0.75083 0.93662 0.94954 0.91419 0.92298 0.95101 0.94266 0.92410 0.91033 0.99570 1.00079 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -8.39 9.83 -56.20 -0.55 -8.95 16 3 C 0.50 13.93 7.82 70.33 0.55 14.48 16 4 O -0.52 -16.81 12.05 19.95 0.24 -16.57 16 5 C -0.14 -3.49 5.77 -20.10 -0.12 -3.61 16 6 C -0.07 -1.29 9.62 22.53 0.22 -1.08 16 7 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 8 C -0.08 -1.02 10.04 22.33 0.22 -0.80 16 9 C -0.13 -2.24 9.66 22.23 0.21 -2.03 16 10 C -0.02 -0.47 4.45 -19.60 -0.09 -0.56 16 11 C -0.11 -2.41 5.12 29.10 0.15 -2.26 16 12 C 0.53 17.12 6.33 87.66 0.55 17.68 16 13 O -0.59 -24.60 15.95 -3.02 -0.05 -24.65 16 14 N -0.71 -22.19 4.96 -463.07 -2.30 -24.49 16 15 C 0.15 5.78 4.56 86.38 0.39 6.17 16 16 C -0.06 -2.56 0.54 -52.18 -0.03 -2.59 16 17 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 18 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 19 C 0.04 2.19 4.04 29.85 0.12 2.31 16 20 C -0.51 -28.30 7.65 25.60 0.20 -28.10 16 21 H 0.07 3.76 5.68 -2.91 -0.02 3.74 16 22 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 23 N -0.94 -58.38 13.29 21.45 0.28 -58.09 16 24 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.15 2.26 7.63 -2.91 -0.02 2.24 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.15 1.88 8.03 -2.91 -0.02 1.86 16 35 H 0.13 1.98 8.00 -2.39 -0.02 1.96 16 36 H 0.12 2.81 6.10 -2.39 -0.01 2.79 16 37 H 0.41 10.21 6.16 -92.71 -0.57 9.64 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 41 H 0.06 2.24 6.62 -2.39 -0.02 2.23 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 2.12 6.62 -2.38 -0.02 2.11 16 45 H 0.07 1.88 6.86 -2.39 -0.02 1.86 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 48 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.55 390.94 5.48 -74.07 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.40 Total: 19.85 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.43 Total: -7.46 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.01 Total: -82.58 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.36 Total: -50.17 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -79.55 5.48 -74.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.622 kcal (2) G-P(sol) polarization free energy of solvation -79.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds