Wall clock time and date at job start Tue Mar 31 2020 18:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30866 * 126.20170 * 2 1 4 4 C 1.34573 * 107.28572 * 180.13390 * 3 2 1 5 5 C 1.47837 * 126.02178 * 179.83574 * 4 3 2 6 6 O 1.21563 * 120.00030 * 179.69096 * 5 4 3 7 7 N 1.34777 * 119.99979 * 359.41549 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27958 * 7 5 4 9 9 C 1.52997 * 109.47551 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.46909 * 299.99865 * 9 8 7 11 11 C 1.52994 * 109.47034 * 59.99372 * 9 8 7 12 12 C 1.53000 * 109.47270 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.46983 * 179.97438 * 12 9 8 14 14 H 1.08000 * 119.99624 * 359.97438 * 13 12 9 15 15 C 1.37869 * 120.00027 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00263 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47041 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47126 * 120.00329 * 17 15 13 20 20 H 1.48496 * 109.47151 * 240.00053 * 17 15 13 21 21 N 1.31560 * 107.95442 * 359.56921 * 4 3 2 22 22 N 1.28849 * 108.70719 * 0.26342 * 21 4 3 23 23 C 1.40103 * 125.76776 * 180.02562 * 22 21 4 24 24 N 1.33629 * 125.59939 * 359.97269 * 23 22 21 25 25 C 1.30801 * 109.79080 * 180.02562 * 24 23 22 26 26 N 1.34430 * 108.20017 * 0.02562 * 25 24 23 27 27 H 0.96999 * 126.77839 * 179.97438 * 26 25 24 28 28 N 1.31151 * 125.59339 * 179.67043 * 23 22 21 29 29 H 1.09003 * 109.46975 * 270.34643 * 1 2 3 30 30 H 1.08996 * 109.46759 * 30.34550 * 1 2 3 31 31 H 1.08994 * 109.46818 * 150.34231 * 1 2 3 32 32 H 0.97000 * 119.99736 * 0.27230 * 7 5 4 33 33 H 1.08998 * 109.46795 * 299.99885 * 8 7 5 34 34 H 1.09002 * 109.47196 * 59.99076 * 8 7 5 35 35 H 1.09002 * 109.47062 * 59.99146 * 10 9 8 36 36 H 1.08994 * 109.47483 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.46630 * 300.00083 * 10 9 8 38 38 H 1.09000 * 109.47560 * 60.00364 * 11 9 8 39 39 H 1.09008 * 109.47339 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47717 * 300.00454 * 11 9 8 41 41 H 1.08992 * 109.46818 * 299.99508 * 12 9 8 42 42 H 1.08997 * 109.47123 * 59.99715 * 12 9 8 43 43 H 0.96994 * 120.00789 * 180.02562 * 16 15 13 44 44 H 1.07998 * 125.89926 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6198 -0.0030 5 6 4.7632 1.4690 -0.0075 6 8 5.8655 0.9565 -0.0043 7 7 4.6442 2.8115 -0.0209 8 6 5.8433 3.6530 -0.0316 9 6 5.4322 5.1267 -0.0464 10 6 4.5984 5.4109 -1.2975 11 6 4.6022 5.4371 1.2008 12 6 6.6845 6.0055 -0.0569 13 6 6.2795 7.4570 -0.0721 14 1 5.2334 7.7256 -0.0745 15 6 7.2442 8.4418 -0.0830 16 7 8.5180 8.1147 -0.0806 17 14 6.7421 10.2410 -0.1011 18 1 5.2605 10.3415 -0.1004 19 1 7.2844 10.9184 1.1040 20 1 7.2824 10.8934 -1.3208 21 7 3.5310 -0.6956 0.0046 22 7 2.3039 -1.0884 0.0066 23 6 1.8704 -2.4207 0.0147 24 7 2.6630 -3.4965 0.0212 25 6 1.9348 -4.5830 0.0273 26 7 0.6402 -4.2209 0.0242 27 1 -0.1284 -4.8126 0.0269 28 7 0.6201 -2.8166 0.0228 29 1 -0.3633 0.0062 1.0277 30 1 -0.3633 0.8869 -0.5192 31 1 -0.3633 -0.8930 -0.5085 32 1 3.7646 3.2204 -0.0235 33 1 6.4375 3.4502 0.8594 34 1 6.4344 3.4321 -0.9204 35 1 3.7063 4.7847 -1.2896 36 1 4.3051 6.4606 -1.3079 37 1 5.1897 5.1897 -2.1860 38 1 5.1961 5.2346 2.0922 39 1 4.3089 6.4869 1.1901 40 1 3.7101 4.8110 1.2088 41 1 7.2780 5.8029 0.8346 42 1 7.2761 5.7844 -0.9453 43 1 9.1968 8.8075 -0.0879 44 1 2.3090 -5.5961 0.0337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360421444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:56 Heat of formation + Delta-G solvation = 151.471472 kcal Electronic energy + Delta-G solvation = -27733.430105 eV Core-core repulsion = 23725.441648 eV Total energy + Delta-G solvation = -4007.988457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.06198 -42.85675 -39.40930 -37.03161 -35.27615 -33.78230 -33.53842 -32.93722 -32.04725 -31.27119 -28.54737 -27.30884 -26.70318 -26.41672 -24.80634 -24.30174 -22.83446 -22.30219 -20.89448 -20.30196 -19.31518 -18.64593 -17.85387 -17.56061 -16.78735 -16.24067 -15.98189 -15.65469 -15.59899 -14.90639 -14.54730 -14.38054 -13.85080 -13.63086 -13.50432 -13.37417 -13.02134 -12.80851 -12.67896 -12.17283 -12.16278 -12.01224 -11.80330 -11.08773 -10.96149 -10.95468 -10.94075 -10.79143 -10.78320 -10.57185 -10.34970 -10.32555 -10.18708 -10.12678 -9.81076 -9.62657 -9.14018 -8.86242 -8.71388 -8.31066 -5.94908 -3.95769 0.29193 0.93261 1.16435 1.75682 2.05595 2.32202 2.99000 3.34258 3.39253 3.42235 3.44980 3.46489 3.66387 3.82744 4.30019 4.49682 4.64997 4.83517 5.06198 5.08009 5.16689 5.39353 5.40746 5.54746 5.68035 5.69063 5.83950 5.89061 6.16179 6.18608 6.27317 6.30470 6.33869 6.47562 6.57989 6.72037 6.81059 7.02076 7.13577 7.15331 7.19001 7.56295 7.70359 7.82603 7.84891 8.04303 8.33387 8.46723 9.09286 9.67109 11.16598 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.002029 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.616585 B =13796.191368 C =14413.110168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.248 3.752 3 N -0.468 5.468 4 C 0.169 3.831 5 C 0.607 3.393 6 O -0.515 6.515 7 N -0.696 5.696 8 C 0.128 3.872 9 C -0.072 4.072 10 C -0.129 4.129 11 C -0.129 4.129 12 C 0.036 3.964 13 C -0.509 4.509 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 N -0.226 5.226 22 N -0.233 5.233 23 C 0.462 3.538 24 N -0.518 5.518 25 C 0.294 3.706 26 N -0.467 5.467 27 H 0.453 0.547 28 N -0.296 5.296 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.259 0.741 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.005 -26.936 0.194 34.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 N -0.194 5.194 4 C -0.112 4.112 5 C 0.387 3.613 6 O -0.388 6.388 7 N -0.348 5.348 8 C 0.006 3.994 9 C -0.072 4.072 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.002 4.002 13 C -0.547 4.547 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.212 1.212 21 N -0.061 5.061 22 N -0.026 5.026 23 C 0.093 3.907 24 N -0.247 5.247 25 C -0.005 4.005 26 N -0.188 5.188 27 H 0.301 0.699 28 N -0.131 5.131 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -20.661 -26.687 0.204 33.751 hybrid contribution -1.112 0.373 0.010 1.173 sum -21.773 -26.315 0.214 34.155 Atomic orbital electron populations 1.20529 0.82194 1.05605 1.05066 1.25305 0.97861 0.80470 0.99130 1.71442 1.00471 1.26766 1.20738 1.24225 0.93206 0.88548 1.05255 1.16216 0.84685 0.82074 0.78299 1.90852 1.25082 1.73553 1.49329 1.45930 1.12039 1.04243 1.72626 1.21785 0.85364 0.89940 1.02344 1.20917 0.99415 0.91598 0.95314 1.21781 0.97788 1.01895 0.97168 1.21781 0.97807 1.01865 0.97186 1.19102 0.90223 0.93276 0.97585 1.21229 0.92734 0.90797 1.49947 0.92135 1.25019 0.95020 0.98917 0.95651 1.69974 0.99533 1.32839 1.51066 0.86589 0.78607 0.85643 0.77458 1.19787 1.21199 1.21195 1.74730 0.98960 1.13716 1.18644 1.43138 1.04643 1.02583 1.52284 1.19362 0.87246 0.83823 1.00300 1.70376 1.33957 0.95828 1.24554 1.26308 0.80322 1.00158 0.93748 1.48038 1.09748 1.04254 1.56741 0.69928 1.78231 1.15773 0.89935 1.29195 0.88690 0.87882 0.88560 0.75394 0.91229 0.91229 0.94972 0.91362 0.93313 0.93314 0.91362 0.94973 0.96229 0.96234 0.93138 0.74379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 9.84 36.01 0.35 -0.16 16 2 C 0.25 2.97 7.94 -155.25 -1.23 1.73 16 3 N -0.47 -6.70 11.09 -8.47 -0.09 -6.80 16 4 C 0.17 2.84 7.96 -156.30 -1.24 1.59 16 5 C 0.61 11.12 7.83 -12.33 -0.10 11.02 16 6 O -0.52 -11.05 17.09 5.31 0.09 -10.96 16 7 N -0.70 -11.68 4.96 -61.25 -0.30 -11.98 16 8 C 0.13 2.38 4.56 -4.04 -0.02 2.36 16 9 C -0.07 -1.41 0.54 -154.51 -0.08 -1.50 16 10 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 11 C -0.13 -2.37 8.05 37.15 0.30 -2.07 16 12 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 13 C -0.51 -13.67 7.65 -34.44 -0.26 -13.93 16 14 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 N -0.23 -3.82 12.03 32.08 0.39 -3.43 16 22 N -0.23 -3.17 3.52 -10.92 -0.04 -3.21 16 23 C 0.46 5.11 8.74 -320.52 -2.80 2.31 16 24 N -0.52 -5.23 11.20 -14.87 -0.17 -5.40 16 25 C 0.29 1.05 13.12 -90.68 -1.19 -0.13 16 26 N -0.47 -1.30 7.44 29.52 0.22 -1.08 16 27 H 0.45 -0.76 8.96 -182.34 -1.63 -2.40 16 28 N -0.30 -2.21 10.41 30.08 0.31 -1.89 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.58 6.33 -51.93 -0.33 0.25 16 32 H 0.41 6.24 5.87 -40.82 -0.24 6.00 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 36 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.33 6.62 -51.92 -0.34 0.98 16 40 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.24 -0.51 8.06 -52.49 -0.42 -0.94 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -38.31 370.94 -11.31 -49.62 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.84 Total: -2.31 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -6.19 Total: 1.38 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 1.05 Total: -59.75 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.31 -11.31 -49.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.093 kcal (2) G-P(sol) polarization free energy of solvation -38.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds