Wall clock time and date at job start Tue Mar 31 2020 18:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30866 * 126.20170 * 2 1 4 4 C 1.34573 * 107.28572 * 180.13390 * 3 2 1 5 5 C 1.47837 * 126.02178 * 179.83574 * 4 3 2 6 6 O 1.21563 * 120.00030 * 179.69096 * 5 4 3 7 7 N 1.34777 * 119.99979 * 359.41549 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27958 * 7 5 4 9 9 C 1.52997 * 109.47551 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.46909 * 299.99865 * 9 8 7 11 11 C 1.52994 * 109.47034 * 59.99372 * 9 8 7 12 12 C 1.53000 * 109.47270 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.46983 * 179.97438 * 12 9 8 14 14 H 1.08000 * 119.99624 * 359.97438 * 13 12 9 15 15 C 1.37869 * 120.00027 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00263 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47041 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47126 * 120.00329 * 17 15 13 20 20 H 1.48496 * 109.47151 * 240.00053 * 17 15 13 21 21 N 1.31560 * 107.95442 * 359.56921 * 4 3 2 22 22 N 1.28849 * 108.70719 * 0.26342 * 21 4 3 23 23 C 1.40103 * 125.76776 * 180.02562 * 22 21 4 24 24 N 1.33629 * 125.59939 * 359.97269 * 23 22 21 25 25 C 1.30801 * 109.79080 * 180.02562 * 24 23 22 26 26 N 1.34430 * 108.20017 * 0.02562 * 25 24 23 27 27 H 0.96999 * 126.77839 * 179.97438 * 26 25 24 28 28 N 1.31151 * 125.59339 * 179.67043 * 23 22 21 29 29 H 1.09003 * 109.46975 * 270.34643 * 1 2 3 30 30 H 1.08996 * 109.46759 * 30.34550 * 1 2 3 31 31 H 1.08994 * 109.46818 * 150.34231 * 1 2 3 32 32 H 0.97000 * 119.99736 * 0.27230 * 7 5 4 33 33 H 1.08998 * 109.46795 * 299.99885 * 8 7 5 34 34 H 1.09002 * 109.47196 * 59.99076 * 8 7 5 35 35 H 1.09002 * 109.47062 * 59.99146 * 10 9 8 36 36 H 1.08994 * 109.47483 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.46630 * 300.00083 * 10 9 8 38 38 H 1.09000 * 109.47560 * 60.00364 * 11 9 8 39 39 H 1.09008 * 109.47339 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47717 * 300.00454 * 11 9 8 41 41 H 1.08992 * 109.46818 * 299.99508 * 12 9 8 42 42 H 1.08997 * 109.47123 * 59.99715 * 12 9 8 43 43 H 0.96994 * 120.00789 * 180.02562 * 16 15 13 44 44 H 1.07998 * 125.89926 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6198 -0.0030 5 6 4.7632 1.4690 -0.0075 6 8 5.8655 0.9565 -0.0043 7 7 4.6442 2.8115 -0.0209 8 6 5.8433 3.6530 -0.0316 9 6 5.4322 5.1267 -0.0464 10 6 4.5984 5.4109 -1.2975 11 6 4.6022 5.4371 1.2008 12 6 6.6845 6.0055 -0.0569 13 6 6.2795 7.4570 -0.0721 14 1 5.2334 7.7256 -0.0745 15 6 7.2442 8.4418 -0.0830 16 7 8.5180 8.1147 -0.0806 17 14 6.7421 10.2410 -0.1011 18 1 5.2605 10.3415 -0.1004 19 1 7.2844 10.9184 1.1040 20 1 7.2824 10.8934 -1.3208 21 7 3.5310 -0.6956 0.0046 22 7 2.3039 -1.0884 0.0066 23 6 1.8704 -2.4207 0.0147 24 7 2.6630 -3.4965 0.0212 25 6 1.9348 -4.5830 0.0273 26 7 0.6402 -4.2209 0.0242 27 1 -0.1284 -4.8126 0.0269 28 7 0.6201 -2.8166 0.0228 29 1 -0.3633 0.0062 1.0277 30 1 -0.3633 0.8869 -0.5192 31 1 -0.3633 -0.8930 -0.5085 32 1 3.7646 3.2204 -0.0235 33 1 6.4375 3.4502 0.8594 34 1 6.4344 3.4321 -0.9204 35 1 3.7063 4.7847 -1.2896 36 1 4.3051 6.4606 -1.3079 37 1 5.1897 5.1897 -2.1860 38 1 5.1961 5.2346 2.0922 39 1 4.3089 6.4869 1.1901 40 1 3.7101 4.8110 1.2088 41 1 7.2780 5.8029 0.8346 42 1 7.2761 5.7844 -0.9453 43 1 9.1968 8.8075 -0.0879 44 1 2.3090 -5.5961 0.0337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360421444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:55 Heat of formation + Delta-G solvation = 126.788129 kcal Electronic energy + Delta-G solvation = -27734.500455 eV Core-core repulsion = 23725.441648 eV Total energy + Delta-G solvation = -4009.058807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.03485 -43.39225 -40.90134 -38.67959 -36.15630 -35.30925 -34.56609 -33.98034 -33.49492 -31.92897 -29.36670 -29.16712 -28.21321 -27.93699 -26.15040 -24.95925 -24.53998 -23.09924 -21.90562 -21.49147 -20.08189 -19.81387 -18.96692 -18.46757 -18.34032 -17.86947 -17.09664 -16.76317 -16.41766 -16.21918 -16.02320 -15.53076 -15.20097 -15.13754 -14.70996 -14.36106 -14.13765 -14.00242 -13.91551 -13.80093 -13.53699 -12.88756 -12.88221 -12.68340 -12.67454 -12.56162 -12.31140 -12.21881 -11.94723 -11.87161 -11.67531 -11.52601 -11.50265 -11.46217 -11.16205 -10.96980 -10.83191 -10.51758 -10.48786 -10.17947 -8.10793 -6.18112 -0.49641 0.20867 0.42233 0.77347 1.44144 1.45085 1.57040 1.64231 1.67576 1.80895 2.04621 2.47076 2.65034 2.88941 3.16836 3.23736 3.59561 3.80292 3.95224 4.08717 4.24015 4.32667 4.54108 4.56262 4.60129 4.67762 4.70638 4.72600 4.75941 4.91207 4.99280 5.00487 5.06481 5.15638 5.28755 5.42429 5.46552 5.53194 5.54787 5.60024 5.82568 5.93163 5.99371 6.22092 6.35040 6.51269 6.80692 6.94849 6.96928 7.49213 9.01884 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.002029 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.616585 B =13796.191368 C =14413.110168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.255 3.745 3 N -0.479 5.479 4 C 0.151 3.849 5 C 0.610 3.390 6 O -0.556 6.556 7 N -0.680 5.680 8 C 0.139 3.861 9 C -0.064 4.064 10 C -0.124 4.124 11 C -0.124 4.124 12 C 0.040 3.960 13 C -0.511 4.511 14 H 0.073 0.927 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.959 3.041 18 H -0.257 1.257 19 H -0.285 1.285 20 H -0.285 1.285 21 N -0.258 5.258 22 N -0.234 5.234 23 C 0.425 3.575 24 N -0.576 5.576 25 C 0.316 3.684 26 N -0.442 5.442 27 H 0.474 0.526 28 N -0.290 5.290 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.419 0.581 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.064 0.936 41 H -0.010 1.010 42 H -0.010 1.010 43 H 0.259 0.741 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.099 -28.379 0.228 38.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.020 4.020 3 N -0.206 5.206 4 C -0.130 4.130 5 C 0.392 3.608 6 O -0.432 6.432 7 N -0.333 5.333 8 C 0.016 3.984 9 C -0.064 4.064 10 C -0.181 4.181 11 C -0.181 4.181 12 C 0.003 3.997 13 C -0.549 4.549 14 H 0.091 0.909 15 C -0.204 4.204 16 N -0.580 5.580 17 Si 0.785 3.215 18 H -0.180 1.180 19 H -0.211 1.211 20 H -0.211 1.211 21 N -0.094 5.094 22 N -0.027 5.027 23 C 0.056 3.944 24 N -0.307 5.307 25 C 0.019 3.981 26 N -0.165 5.165 27 H 0.328 0.672 28 N -0.127 5.127 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.258 0.742 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -24.856 -28.169 0.238 37.568 hybrid contribution 0.042 0.560 0.002 0.562 sum -24.814 -27.609 0.240 37.122 Atomic orbital electron populations 1.20798 0.78547 1.06918 1.06620 1.26191 0.99410 0.79480 0.96905 1.71389 0.99447 1.27891 1.21875 1.23741 0.93464 0.88567 1.07251 1.16398 0.84853 0.82300 0.77266 1.90819 1.26864 1.74305 1.51188 1.45668 1.11759 1.03750 1.72118 1.21480 0.85897 0.89692 1.01364 1.20722 0.97503 0.90966 0.97211 1.21718 0.98578 1.02019 0.95783 1.21717 0.98599 1.01982 0.95805 1.18972 0.91946 0.94111 0.94706 1.21622 0.93265 0.91554 1.48466 0.90853 1.25952 0.94988 1.03822 0.95592 1.70127 1.00820 1.34282 1.52722 0.85476 0.79033 0.79818 0.77181 1.18021 1.21138 1.21129 1.74593 1.01399 1.13915 1.19530 1.43222 1.03752 1.04252 1.51452 1.19516 0.88429 0.83172 1.03271 1.70292 1.36372 0.97182 1.26884 1.27249 0.79696 1.00583 0.90585 1.48010 1.10798 1.02800 1.54890 0.67225 1.78119 1.14136 0.92412 1.27991 0.86773 0.86181 0.87466 0.74151 0.92355 0.92353 0.91675 0.92168 0.94099 0.94103 0.92170 0.91680 0.99199 0.99206 0.93226 0.69052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 9.84 71.24 0.70 -0.08 16 2 C 0.25 5.80 7.94 138.07 1.10 6.90 16 3 N -0.48 -13.38 11.09 -180.70 -2.00 -15.38 16 4 C 0.15 5.14 7.96 137.09 1.09 6.24 16 5 C 0.61 22.99 7.83 86.78 0.68 23.67 16 6 O -0.56 -25.01 17.09 -3.91 -0.07 -25.07 16 7 N -0.68 -22.86 4.96 -465.98 -2.31 -25.17 16 8 C 0.14 5.32 4.56 86.38 0.39 5.71 16 9 C -0.06 -2.52 0.54 -52.18 -0.03 -2.55 16 10 C -0.12 -4.41 8.05 71.98 0.58 -3.83 16 11 C -0.12 -4.42 8.05 71.98 0.58 -3.84 16 12 C 0.04 2.08 4.04 29.85 0.12 2.20 16 13 C -0.51 -27.74 7.65 25.60 0.20 -27.54 16 14 H 0.07 3.73 5.68 -2.91 -0.02 3.72 16 15 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 16 N -0.94 -57.68 13.29 21.44 0.28 -57.40 16 17 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 N -0.26 -8.95 12.03 -52.42 -0.63 -9.58 16 22 N -0.23 -6.32 3.52 -188.45 -0.66 -6.98 16 23 C 0.42 8.96 8.74 260.69 2.28 11.24 16 24 N -0.58 -10.99 11.20 -200.95 -2.25 -13.24 16 25 C 0.32 1.28 13.12 180.37 2.37 3.64 16 26 N -0.44 -0.94 7.44 -60.51 -0.45 -1.39 16 27 H 0.47 -3.58 8.96 -213.10 -1.91 -5.49 16 28 N -0.29 -3.63 10.41 -58.74 -0.61 -4.24 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 0.99 6.33 -2.39 -0.02 0.97 16 32 H 0.42 12.23 5.87 -92.71 -0.54 11.69 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 1.88 6.86 -2.39 -0.02 1.87 16 36 H 0.06 2.25 6.62 -2.39 -0.02 2.23 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 2.25 6.62 -2.38 -0.02 2.23 16 40 H 0.06 1.88 6.86 -2.39 -0.02 1.87 16 41 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.29 -2.65 8.06 -2.91 -0.02 -2.67 16 Total: -1.00 -88.85 370.94 2.46 -86.39 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -1.38 Total: 3.97 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 10.52 Total: 21.83 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -8.63 Total: -133.38 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -88.85 2.46 -86.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.175 kcal (2) G-P(sol) polarization free energy of solvation -88.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds