Wall clock time and date at job start Tue Mar 31 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.33876 * 2 1 4 4 C 1.54290 * 109.40811 * 119.79853 * 2 1 3 5 5 N 1.48186 * 110.65964 * 80.71377 * 4 2 1 6 6 C 1.34782 * 118.51014 * 138.79318 * 5 4 2 7 7 O 1.21279 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.46947 * 180.02562 * 8 6 5 10 10 C 1.38329 * 119.96524 * 89.99908 * 9 8 6 11 11 C 1.38277 * 120.13562 * 179.97438 * 10 9 8 12 12 C 1.38117 * 120.07393 * 359.97438 * 11 10 9 13 13 C 1.38856 * 119.93121 * 0.02562 * 12 11 10 14 14 O 1.35747 * 120.07565 * 180.02562 * 13 12 11 15 15 C 1.34837 * 116.99684 * 353.97354 * 14 13 12 16 16 H 1.08001 * 119.99879 * 354.60200 * 15 14 13 17 17 C 1.38657 * 120.00052 * 174.61133 * 15 14 13 18 18 N 1.31555 * 119.99951 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99880 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47039 * 90.00182 * 19 17 15 21 21 H 1.48498 * 109.47044 * 210.00302 * 19 17 15 22 22 H 1.48501 * 109.47424 * 330.00398 * 19 17 15 23 23 C 1.38071 * 119.96612 * 269.72577 * 9 8 6 24 24 C 1.44452 * 122.97421 * 318.77531 * 5 4 2 25 25 C 1.54873 * 109.33185 * 88.95811 * 24 5 4 26 26 C 1.47685 * 109.67896 * 290.10178 * 25 24 5 27 27 O 1.40551 * 109.41051 * 240.22852 * 2 1 3 28 28 H 1.08998 * 109.47572 * 298.70350 * 1 2 3 29 29 H 1.09001 * 109.47536 * 58.70310 * 1 2 3 30 30 H 1.09000 * 109.47121 * 178.70009 * 1 2 3 31 31 H 1.08994 * 109.47372 * 179.80153 * 3 2 1 32 32 H 1.09006 * 109.46783 * 299.80020 * 3 2 1 33 33 H 1.08996 * 109.47139 * 59.79983 * 3 2 1 34 34 H 1.08997 * 109.23320 * 320.42703 * 4 2 1 35 35 H 1.08999 * 109.23447 * 201.00889 * 4 2 1 36 36 H 1.09000 * 109.47317 * 299.99887 * 8 6 5 37 37 H 1.08995 * 109.47658 * 59.99865 * 8 6 5 38 38 H 1.07997 * 119.93279 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.96308 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03999 * 180.02562 * 12 11 10 41 41 H 0.96998 * 119.99613 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.04004 * 359.97438 * 23 9 8 43 43 H 1.09003 * 109.49622 * 208.91564 * 24 5 4 44 44 H 1.08999 * 109.49512 * 328.99795 * 24 5 4 45 45 H 1.08997 * 109.43608 * 50.16178 * 25 24 5 46 46 H 1.08997 * 109.43930 * 170.03795 * 25 24 5 47 47 H 1.08995 * 108.64546 * 181.88156 * 26 25 24 48 48 H 1.09001 * 108.64681 * 299.72030 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4437 0.0000 4 6 2.0427 -0.7232 1.2628 5 7 2.0054 -2.1926 1.0752 6 6 3.0403 -2.9259 1.5311 7 8 3.9739 -2.3809 2.0809 8 6 3.0374 -4.4228 1.3576 9 6 4.2975 -4.9995 1.9497 10 6 4.3231 -5.3853 3.2779 11 6 5.4773 -5.9154 3.8246 12 6 6.6083 -6.0618 3.0456 13 6 6.5858 -5.6755 1.7120 14 8 7.6956 -5.8186 0.9435 15 6 8.8218 -6.2243 1.5642 16 1 8.8362 -6.3356 2.6383 17 6 9.9614 -6.4985 0.8234 18 7 11.0600 -6.8949 1.4289 19 14 9.9362 -6.3065 -1.0345 20 1 10.3363 -4.9225 -1.3946 21 1 10.8861 -7.2711 -1.6447 22 1 8.5660 -6.5733 -1.5413 23 6 5.4234 -5.1476 1.1645 24 6 0.9099 -2.8748 0.4262 25 6 1.1806 -2.9461 -1.0970 26 6 1.0669 -1.5966 -1.6861 27 8 1.9971 -0.6582 -1.1507 28 1 -0.3634 0.4935 0.9013 29 1 -0.3634 0.5338 -0.8781 30 1 -0.3633 -1.0274 -0.0233 31 1 3.1266 1.4463 0.0036 32 1 1.6750 1.9556 -0.8918 33 1 1.6692 1.9577 0.8881 34 1 1.4138 -0.4535 2.1112 35 1 3.0681 -0.4127 1.4630 36 1 2.1709 -4.8458 1.8659 37 1 2.9901 -4.6655 0.2961 38 1 3.4399 -5.2723 3.8890 39 1 5.4943 -6.2153 4.8620 40 1 7.5094 -6.4763 3.4731 41 1 11.8570 -7.0871 0.9106 42 1 5.4014 -4.8507 0.1263 43 1 0.8211 -3.8844 0.8276 44 1 -0.0162 -2.3288 0.6059 45 1 2.1848 -3.3335 -1.2691 46 1 0.4520 -3.6085 -1.5643 47 1 1.2271 -1.6713 -2.7616 48 1 0.0573 -1.2244 -1.5121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366885175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:40 Heat of formation + Delta-G solvation = -57.628938 kcal Electronic energy + Delta-G solvation = -29322.606033 eV Core-core repulsion = 25344.505143 eV Total energy + Delta-G solvation = -3978.100890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11778 -39.44351 -38.69608 -36.59209 -35.61860 -34.43807 -32.37217 -32.04042 -31.60237 -29.41006 -28.08680 -27.85860 -26.54512 -25.57839 -25.01170 -22.38447 -21.65385 -20.77676 -20.06596 -19.06853 -17.95109 -17.60752 -17.28280 -16.86898 -16.22611 -15.86239 -15.36652 -15.11580 -15.00169 -14.62059 -14.18025 -13.90892 -13.81402 -13.67611 -13.49609 -13.34100 -13.17289 -13.02848 -12.68334 -12.52172 -12.43093 -12.26958 -12.19105 -12.11171 -11.91362 -11.64615 -11.54188 -11.24962 -11.15706 -10.78225 -10.74035 -10.63340 -10.41817 -10.10349 -9.83215 -9.64106 -9.34599 -8.80342 -8.72599 -8.06980 -7.28572 -6.34720 -4.01007 2.07746 2.35708 2.73209 2.92198 3.27575 3.30977 3.45180 3.45844 4.26196 4.30071 4.33012 4.37160 4.48788 4.55978 4.60026 4.77655 4.87456 4.90659 4.98820 5.03485 5.11344 5.15364 5.17598 5.28427 5.31468 5.33432 5.40802 5.42371 5.48492 5.56743 5.61634 5.62373 5.74450 5.77154 5.83542 5.90497 5.95958 6.19469 6.32883 6.43014 6.59869 6.86093 7.07577 7.17604 7.28545 7.29632 7.39180 7.67826 7.87723 8.11444 8.28439 9.01029 9.64654 10.73312 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.002881 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.895510 B = 9716.317809 C =10518.794802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.100 3.900 3 C -0.144 4.144 4 C 0.098 3.902 5 N -0.610 5.610 6 C 0.513 3.487 7 O -0.517 6.517 8 C -0.092 4.092 9 C -0.035 4.035 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.218 4.218 13 C 0.161 3.839 14 O -0.220 6.220 15 C -0.387 4.387 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.099 3.901 25 C -0.176 4.176 26 C 0.042 3.958 27 O -0.355 6.355 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.156 11.187 -3.929 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.059 3.941 3 C -0.202 4.202 4 C -0.025 4.025 5 N -0.345 5.345 6 C 0.301 3.699 7 O -0.391 6.391 8 C -0.132 4.132 9 C -0.036 4.036 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.237 4.237 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.462 4.462 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.193 4.193 24 C -0.025 4.025 25 C -0.215 4.215 26 C -0.034 4.034 27 O -0.274 6.274 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.193 11.499 -3.977 28.881 hybrid contribution -0.067 -0.100 -0.578 0.591 sum -26.260 11.399 -4.555 28.987 Atomic orbital electron populations 1.22921 0.95819 1.03375 1.03263 1.21683 0.93144 0.93065 0.86185 1.21891 1.02712 0.93075 1.02510 1.22599 1.04090 0.79308 0.96459 1.47686 1.20775 1.06489 1.59548 1.20817 0.81469 0.89650 0.77939 1.90741 1.34058 1.73002 1.41251 1.20658 0.98065 0.91484 1.02990 1.18680 0.92897 0.98178 0.93802 1.20401 0.98393 1.07410 0.94525 1.20726 0.92620 0.97633 0.98457 1.21292 0.99937 1.07871 0.94591 1.19020 0.86851 0.93119 0.90121 1.83580 1.16228 1.76292 1.36406 1.20761 0.85533 1.45601 0.94328 0.87714 1.24452 0.93924 0.95458 1.00193 1.69650 1.01677 1.43872 1.36865 0.86186 0.78831 0.78339 0.83581 1.19871 1.20878 1.18402 1.19931 0.91684 1.07662 1.00008 1.21792 0.90096 0.98379 0.92184 1.22108 1.04164 0.98696 0.96515 1.21686 0.94470 0.89119 0.98167 1.87621 1.43049 1.54581 1.42118 0.91095 0.91349 0.90316 0.91288 0.91629 0.91088 0.91416 0.88468 0.88475 0.88383 0.87822 0.87203 0.85000 0.91148 0.86908 0.89548 0.89928 0.90358 0.89412 0.89961 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 6.80 37.16 0.25 -0.87 16 2 C 0.10 0.87 1.09 -89.94 -0.10 0.77 16 3 C -0.14 -1.12 8.73 37.16 0.32 -0.80 16 4 C 0.10 1.04 5.45 -2.44 -0.01 1.03 16 5 N -0.61 -6.83 2.55 -171.94 -0.44 -7.27 16 6 C 0.51 7.70 7.62 -10.98 -0.08 7.62 16 7 O -0.52 -10.31 15.33 5.56 0.09 -10.22 16 8 C -0.09 -1.23 4.29 -29.04 -0.12 -1.36 16 9 C -0.03 -0.64 4.37 -104.65 -0.46 -1.09 16 10 C -0.19 -3.40 9.70 -39.53 -0.38 -3.78 16 11 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 12 C -0.22 -5.00 9.13 -39.40 -0.36 -5.36 16 13 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 14 O -0.22 -6.10 8.59 0.04 0.00 -6.10 16 15 C -0.39 -11.34 9.90 30.89 0.31 -11.04 16 16 H 0.11 3.14 5.53 -52.49 -0.29 2.85 16 17 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 18 N -0.88 -26.24 13.96 55.48 0.77 -25.47 16 19 Si 0.90 22.47 28.62 -169.99 -4.86 17.60 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.17 -3.72 9.64 -39.39 -0.38 -4.10 16 24 C 0.10 0.73 5.14 -4.15 -0.02 0.71 16 25 C -0.18 -1.26 5.95 -28.31 -0.17 -1.43 16 26 C 0.04 0.32 5.83 34.59 0.20 0.52 16 27 O -0.36 -3.88 9.85 -34.14 -0.34 -4.21 16 28 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 29 H 0.07 0.35 7.83 -51.93 -0.41 -0.06 16 30 H 0.08 0.39 3.28 -51.93 -0.17 0.22 16 31 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 35 H 0.10 1.31 6.83 -51.93 -0.35 0.96 16 36 H 0.10 0.99 7.24 -51.93 -0.38 0.61 16 37 H 0.10 1.14 7.22 -51.93 -0.37 0.76 16 38 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.13 3.15 5.72 -52.49 -0.30 2.85 16 41 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.09 0.53 6.16 -51.93 -0.32 0.21 16 44 H 0.08 0.45 5.26 -51.93 -0.27 0.17 16 45 H 0.08 0.74 7.44 -51.93 -0.39 0.36 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.38 4.51 -51.93 -0.23 0.15 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -35.29 372.32 -7.77 -43.06 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.84 Total: 2.65 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -1.76 Total: -15.65 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.34 Total: -32.74 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.25 Total: -20.53 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.86 Total: 17.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.29 -7.77 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366885175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.574 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds