Wall clock time and date at job start Tue Mar 31 2020 18:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.33876 * 2 1 4 4 C 1.54290 * 109.40811 * 119.79853 * 2 1 3 5 5 N 1.48186 * 110.65964 * 80.71377 * 4 2 1 6 6 C 1.34782 * 118.51014 * 138.79318 * 5 4 2 7 7 O 1.21279 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.46947 * 180.02562 * 8 6 5 10 10 C 1.38329 * 119.96524 * 89.99908 * 9 8 6 11 11 C 1.38277 * 120.13562 * 179.97438 * 10 9 8 12 12 C 1.38117 * 120.07393 * 359.97438 * 11 10 9 13 13 C 1.38856 * 119.93121 * 0.02562 * 12 11 10 14 14 O 1.35747 * 120.07565 * 180.02562 * 13 12 11 15 15 C 1.34837 * 116.99684 * 353.97354 * 14 13 12 16 16 H 1.08001 * 119.99879 * 354.60200 * 15 14 13 17 17 C 1.38657 * 120.00052 * 174.61133 * 15 14 13 18 18 N 1.31555 * 119.99951 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99880 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47039 * 90.00182 * 19 17 15 21 21 H 1.48498 * 109.47044 * 210.00302 * 19 17 15 22 22 H 1.48501 * 109.47424 * 330.00398 * 19 17 15 23 23 C 1.38071 * 119.96612 * 269.72577 * 9 8 6 24 24 C 1.44452 * 122.97421 * 318.77531 * 5 4 2 25 25 C 1.54873 * 109.33185 * 88.95811 * 24 5 4 26 26 C 1.47685 * 109.67896 * 290.10178 * 25 24 5 27 27 O 1.40551 * 109.41051 * 240.22852 * 2 1 3 28 28 H 1.08998 * 109.47572 * 298.70350 * 1 2 3 29 29 H 1.09001 * 109.47536 * 58.70310 * 1 2 3 30 30 H 1.09000 * 109.47121 * 178.70009 * 1 2 3 31 31 H 1.08994 * 109.47372 * 179.80153 * 3 2 1 32 32 H 1.09006 * 109.46783 * 299.80020 * 3 2 1 33 33 H 1.08996 * 109.47139 * 59.79983 * 3 2 1 34 34 H 1.08997 * 109.23320 * 320.42703 * 4 2 1 35 35 H 1.08999 * 109.23447 * 201.00889 * 4 2 1 36 36 H 1.09000 * 109.47317 * 299.99887 * 8 6 5 37 37 H 1.08995 * 109.47658 * 59.99865 * 8 6 5 38 38 H 1.07997 * 119.93279 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.96308 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03999 * 180.02562 * 12 11 10 41 41 H 0.96998 * 119.99613 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.04004 * 359.97438 * 23 9 8 43 43 H 1.09003 * 109.49622 * 208.91564 * 24 5 4 44 44 H 1.08999 * 109.49512 * 328.99795 * 24 5 4 45 45 H 1.08997 * 109.43608 * 50.16178 * 25 24 5 46 46 H 1.08997 * 109.43930 * 170.03795 * 25 24 5 47 47 H 1.08995 * 108.64546 * 181.88156 * 26 25 24 48 48 H 1.09001 * 108.64681 * 299.72030 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4437 0.0000 4 6 2.0427 -0.7232 1.2628 5 7 2.0054 -2.1926 1.0752 6 6 3.0403 -2.9259 1.5311 7 8 3.9739 -2.3809 2.0809 8 6 3.0374 -4.4228 1.3576 9 6 4.2975 -4.9995 1.9497 10 6 4.3231 -5.3853 3.2779 11 6 5.4773 -5.9154 3.8246 12 6 6.6083 -6.0618 3.0456 13 6 6.5858 -5.6755 1.7120 14 8 7.6956 -5.8186 0.9435 15 6 8.8218 -6.2243 1.5642 16 1 8.8362 -6.3356 2.6383 17 6 9.9614 -6.4985 0.8234 18 7 11.0600 -6.8949 1.4289 19 14 9.9362 -6.3065 -1.0345 20 1 10.3363 -4.9225 -1.3946 21 1 10.8861 -7.2711 -1.6447 22 1 8.5660 -6.5733 -1.5413 23 6 5.4234 -5.1476 1.1645 24 6 0.9099 -2.8748 0.4262 25 6 1.1806 -2.9461 -1.0970 26 6 1.0669 -1.5966 -1.6861 27 8 1.9971 -0.6582 -1.1507 28 1 -0.3634 0.4935 0.9013 29 1 -0.3634 0.5338 -0.8781 30 1 -0.3633 -1.0274 -0.0233 31 1 3.1266 1.4463 0.0036 32 1 1.6750 1.9556 -0.8918 33 1 1.6692 1.9577 0.8881 34 1 1.4138 -0.4535 2.1112 35 1 3.0681 -0.4127 1.4630 36 1 2.1709 -4.8458 1.8659 37 1 2.9901 -4.6655 0.2961 38 1 3.4399 -5.2723 3.8890 39 1 5.4943 -6.2153 4.8620 40 1 7.5094 -6.4763 3.4731 41 1 11.8570 -7.0871 0.9106 42 1 5.4014 -4.8507 0.1263 43 1 0.8211 -3.8844 0.8276 44 1 -0.0162 -2.3288 0.6059 45 1 2.1848 -3.3335 -1.2691 46 1 0.4520 -3.6085 -1.5643 47 1 1.2271 -1.6713 -2.7616 48 1 0.0573 -1.2244 -1.5121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366885175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:39 Heat of formation + Delta-G solvation = -80.943365 kcal Electronic energy + Delta-G solvation = -29323.617023 eV Core-core repulsion = 25344.505143 eV Total energy + Delta-G solvation = -3979.111880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92640 -40.94376 -40.00412 -38.30276 -36.51640 -35.11445 -34.49824 -33.47246 -32.29299 -31.12035 -29.19476 -28.48038 -27.46778 -27.13698 -26.31528 -23.50171 -23.03868 -22.29397 -20.68452 -20.19029 -19.63703 -18.90949 -18.43166 -18.11498 -17.07817 -16.90550 -16.67382 -16.59181 -16.01597 -15.88001 -15.73191 -15.59740 -15.11384 -14.77343 -14.45294 -14.38479 -14.26451 -14.12644 -14.04853 -13.82294 -13.59253 -13.17163 -13.07526 -13.02422 -12.86074 -12.74786 -12.63064 -12.48387 -12.42803 -12.35927 -12.12838 -11.94506 -11.78773 -11.35678 -11.04617 -10.93401 -10.73416 -10.49965 -9.68577 -9.60475 -9.08453 -8.52450 -6.25059 0.46392 0.67899 1.27335 1.32887 1.48242 1.63635 2.01387 2.25852 2.73692 2.87890 3.05342 3.08837 3.58827 3.71676 3.79167 3.84787 3.96792 3.99254 4.03943 4.08846 4.25383 4.35257 4.38979 4.42206 4.49405 4.53779 4.56439 4.63800 4.67531 4.71414 4.76832 4.79035 4.86554 4.88983 4.93043 4.96232 5.11924 5.17298 5.21721 5.23005 5.37639 5.41223 5.62608 5.62887 5.70293 5.74116 5.89407 6.22003 6.39088 6.48800 6.81820 7.22628 7.56879 8.59638 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.002881 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.895510 B = 9716.317809 C =10518.794802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.099 3.901 3 C -0.145 4.145 4 C 0.093 3.907 5 N -0.599 5.599 6 C 0.507 3.493 7 O -0.582 6.582 8 C -0.088 4.088 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.076 4.076 12 C -0.240 4.240 13 C 0.119 3.881 14 O -0.248 6.248 15 C -0.399 4.399 16 H 0.079 0.921 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.970 3.030 20 H -0.269 1.269 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.183 4.183 24 C 0.088 3.912 25 C -0.173 4.173 26 C 0.030 3.970 27 O -0.391 6.391 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.285 0.715 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.049 0.951 46 H 0.122 0.878 47 H 0.082 0.918 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.501 11.586 -4.639 34.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.058 3.942 3 C -0.202 4.202 4 C -0.030 4.030 5 N -0.331 5.331 6 C 0.296 3.704 7 O -0.461 6.461 8 C -0.127 4.127 9 C -0.029 4.029 10 C -0.188 4.188 11 C -0.094 4.094 12 C -0.259 4.259 13 C 0.071 3.929 14 O -0.156 6.156 15 C -0.476 4.476 16 H 0.096 0.904 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.186 1.186 22 H -0.188 1.188 23 C -0.202 4.202 24 C -0.034 4.034 25 C -0.212 4.212 26 C -0.045 4.045 27 O -0.310 6.310 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.068 0.932 46 H 0.140 0.860 47 H 0.100 0.900 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -31.625 11.900 -4.697 34.114 hybrid contribution 1.280 -0.116 -0.222 1.304 sum -30.344 11.784 -4.919 32.922 Atomic orbital electron populations 1.22859 0.92811 1.04472 1.04542 1.21759 0.95350 0.92514 0.84569 1.21920 1.01080 0.93426 1.03813 1.22709 1.02362 0.79337 0.98575 1.47761 1.20605 1.06629 1.58117 1.21097 0.81449 0.90355 0.77469 1.90731 1.36616 1.74155 1.44636 1.20767 0.96953 0.90349 1.04600 1.19235 0.93683 0.96139 0.93809 1.21002 0.99069 1.04056 0.94699 1.21124 0.91773 0.96839 0.99691 1.21325 1.00735 1.09136 0.94724 1.19587 0.87197 0.95096 0.91059 1.83513 1.16584 1.78534 1.36936 1.20706 0.87032 1.46251 0.93587 0.90368 1.25276 0.93368 0.95225 1.04929 1.69728 1.02426 1.45581 1.38694 0.85230 0.78866 0.78826 0.77845 1.19388 1.18620 1.18780 1.20232 0.91777 1.07422 1.00804 1.22219 0.89607 0.99647 0.91955 1.22115 1.03571 0.98851 0.96636 1.21940 0.95326 0.89063 0.98177 1.87600 1.44983 1.55565 1.42865 0.89628 0.90359 0.89137 0.93946 0.90805 0.89249 0.89313 0.92500 0.83724 0.86332 0.83270 0.83958 0.87406 0.90510 0.86663 0.87315 0.87077 0.93173 0.86014 0.90017 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 6.80 71.98 0.49 -0.87 16 2 C 0.10 1.52 1.09 -10.36 -0.01 1.51 16 3 C -0.14 -2.14 8.73 71.98 0.63 -1.52 16 4 C 0.09 1.85 5.45 86.49 0.47 2.32 16 5 N -0.60 -11.77 2.55 -816.28 -2.08 -13.85 16 6 C 0.51 14.22 7.62 87.66 0.67 14.89 16 7 O -0.58 -23.34 15.33 -3.03 -0.05 -23.38 16 8 C -0.09 -2.01 4.29 29.10 0.12 -1.88 16 9 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 10 C -0.17 -5.58 9.70 22.30 0.22 -5.36 16 11 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 12 C -0.24 -11.54 9.13 22.39 0.20 -11.34 16 13 C 0.12 6.16 6.65 22.58 0.15 6.31 16 14 O -0.25 -14.59 8.59 -22.77 -0.20 -14.78 16 15 C -0.40 -25.07 9.90 67.92 0.67 -24.39 16 16 H 0.08 5.14 5.53 -2.91 -0.02 5.12 16 17 C 0.01 0.62 5.49 84.83 0.47 1.09 16 18 N -0.92 -57.44 13.96 21.61 0.30 -57.14 16 19 Si 0.97 47.93 28.62 68.60 1.96 49.89 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.18 -7.94 9.64 22.39 0.22 -7.72 16 24 C 0.09 0.86 5.14 87.40 0.45 1.31 16 25 C -0.17 -1.81 5.95 29.57 0.18 -1.64 16 26 C 0.03 0.37 5.83 70.32 0.41 0.78 16 27 O -0.39 -8.02 9.85 -145.08 -1.43 -9.45 16 28 H 0.08 0.41 8.11 -2.39 -0.02 0.39 16 29 H 0.08 0.46 7.83 -2.39 -0.02 0.44 16 30 H 0.09 0.41 3.28 -2.39 -0.01 0.40 16 31 H 0.04 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.36 7.96 -2.39 -0.02 1.34 16 35 H 0.06 1.61 6.83 -2.39 -0.02 1.59 16 36 H 0.15 1.98 7.24 -2.39 -0.02 1.96 16 37 H 0.12 2.30 7.22 -2.39 -0.02 2.29 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.11 5.62 5.72 -2.91 -0.02 5.60 16 41 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 42 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 43 H 0.11 0.63 6.16 -2.39 -0.01 0.61 16 44 H 0.11 0.52 5.26 -2.39 -0.01 0.51 16 45 H 0.05 0.83 7.44 -2.39 -0.02 0.81 16 46 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 0.64 4.51 -2.39 -0.01 0.63 16 Total: -1.00 -85.60 372.32 4.96 -80.64 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.98 Total: 18.29 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 5.47 Total: -30.23 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.78 Total: -70.99 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.67 Total: -47.61 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.96 Total: 49.89 kcal Total: -85.60 4.96 -80.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366885175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.299 kcal (2) G-P(sol) polarization free energy of solvation -85.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds