Wall clock time and date at job start Tue Mar 31 2020 17:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00241 * 2 1 4 4 H 1.48504 * 109.46628 * 269.99450 * 3 2 1 5 5 H 1.48500 * 109.47183 * 29.99160 * 3 2 1 6 6 H 1.48492 * 109.47077 * 149.99776 * 3 2 1 7 7 C 1.38810 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00069 * 164.19287 * 7 2 1 9 9 N 1.36941 * 120.00074 * 344.20008 * 7 2 1 10 10 C 1.46968 * 120.59118 * 152.06711 * 9 7 2 11 11 C 1.53374 * 108.63426 * 125.04811 * 10 9 7 12 12 N 1.46969 * 108.63306 * 49.42399 * 11 10 9 13 13 C 1.34771 * 120.59701 * 124.79816 * 12 11 10 14 14 O 1.21273 * 120.00365 * 184.86718 * 13 12 11 15 15 C 1.50705 * 119.99629 * 4.86509 * 13 12 11 16 16 H 1.09004 * 109.50875 * 324.97189 * 15 13 12 17 17 C 1.53098 * 109.50438 * 85.06089 * 15 13 12 18 18 O 1.43021 * 109.25530 * 176.78174 * 17 15 13 19 19 C 1.43014 * 113.73873 * 301.32799 * 18 17 15 20 20 C 1.53091 * 109.25855 * 58.67395 * 19 18 17 21 21 N 1.47013 * 109.50791 * 204.88525 * 15 13 12 22 22 C 1.46897 * 111.00071 * 57.67127 * 21 15 13 23 23 C 1.53004 * 109.47239 * 165.69892 * 22 21 15 24 24 F 1.39898 * 109.46691 * 293.29330 * 23 22 21 25 25 F 1.39895 * 109.46837 * 53.29804 * 23 22 21 26 26 C 1.46966 * 118.80989 * 304.77111 * 12 11 10 27 27 C 1.46959 * 120.59379 * 332.34717 * 9 7 2 28 28 H 0.97006 * 119.99799 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.60765 * 244.79301 * 10 9 7 30 30 H 1.08996 * 109.61213 * 5.30332 * 10 9 7 31 31 H 1.08995 * 109.60723 * 289.67811 * 11 10 9 32 32 H 1.08996 * 109.60974 * 169.16712 * 11 10 9 33 33 H 1.08998 * 109.50605 * 296.71385 * 17 15 13 34 34 H 1.08998 * 109.51038 * 56.80695 * 17 15 13 35 35 H 1.08997 * 109.50380 * 178.60838 * 19 18 17 36 36 H 1.09000 * 109.50396 * 298.73655 * 19 18 17 37 37 H 1.09003 * 109.51074 * 63.08424 * 20 19 18 38 38 H 1.08998 * 109.50497 * 183.17323 * 20 19 18 39 39 H 1.09001 * 109.47267 * 285.70004 * 22 21 15 40 40 H 1.09003 * 109.47045 * 45.70102 * 22 21 15 41 41 H 1.09004 * 109.46973 * 173.29528 * 23 22 21 42 42 H 1.09002 * 109.61396 * 295.48257 * 26 12 11 43 43 H 1.09001 * 109.74760 * 175.05851 * 26 12 11 44 44 H 1.08996 * 109.61080 * 354.69539 * 27 9 7 45 45 H 1.09001 * 109.60960 * 115.03727 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0596 -1.2201 -0.2542 9 7 1.3642 -2.3655 0.3240 10 6 1.8213 -3.6514 -0.2215 11 6 2.0844 -4.6126 0.9444 12 7 0.9179 -4.5969 1.8382 13 6 0.2791 -5.7412 2.1526 14 8 -0.7337 -5.7070 2.8188 15 6 0.8233 -7.0633 1.6761 16 1 1.2685 -6.9392 0.6889 17 6 1.8872 -7.5618 2.6577 18 8 2.3461 -8.8508 2.2413 19 6 1.3093 -9.8326 2.1603 20 6 0.2396 -9.3571 1.1737 21 7 -0.2680 -8.0456 1.6024 22 6 -1.3383 -7.5776 0.7117 23 6 -2.2697 -8.7443 0.3767 24 9 -1.5789 -9.6860 -0.3935 25 9 -2.7108 -9.3438 1.5612 26 6 0.4609 -3.3110 2.3837 27 6 0.1978 -2.3498 1.2178 28 1 -0.4850 0.8401 -0.0004 29 1 1.0518 -4.0671 -0.8719 30 1 2.7409 -3.5026 -0.7875 31 1 2.9695 -4.2895 1.4922 32 1 2.2370 -5.6210 0.5598 33 1 2.7247 -6.8644 2.6718 34 1 1.4561 -7.6333 3.6563 35 1 1.7289 -10.7773 1.8148 36 1 0.8612 -9.9707 3.1443 37 1 0.6753 -9.2703 0.1783 38 1 -0.5797 -10.0755 1.1510 39 1 -1.9060 -6.7905 1.2081 40 1 -0.9013 -7.1862 -0.2070 41 1 -3.1277 -8.3746 -0.1848 42 1 1.2304 -2.8952 3.0341 43 1 -0.4580 -3.4575 2.9515 44 1 0.0452 -1.3414 1.6024 45 1 -0.6879 -2.6700 0.6691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408351086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:04 Heat of formation + Delta-G solvation = -119.447424 kcal Electronic energy + Delta-G solvation = -31081.631347 eV Core-core repulsion = 26578.913027 eV Total energy + Delta-G solvation = -4502.718320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.31495 -47.13350 -40.61618 -38.81076 -36.94732 -35.85658 -34.04012 -31.93779 -31.24911 -30.58247 -30.08236 -27.16491 -26.38378 -25.01582 -23.65313 -22.91368 -22.61378 -21.40713 -20.16947 -18.87744 -17.96551 -17.62704 -17.32353 -16.98790 -16.30478 -16.26007 -15.99253 -15.46281 -15.18422 -14.93273 -14.58903 -14.54015 -14.26338 -13.93096 -13.84420 -13.72903 -13.48536 -13.45844 -13.34829 -12.96762 -12.78822 -12.41067 -12.18022 -12.06368 -11.84526 -11.65154 -11.28353 -11.19376 -10.87308 -10.79523 -10.64479 -10.62658 -10.32214 -10.03700 -9.97527 -9.88880 -9.36251 -8.66327 -8.59080 -8.33509 -6.79660 -5.90904 -3.37056 2.72311 3.05647 3.30136 3.37881 3.39215 3.41971 3.57679 3.72645 3.99040 4.35700 4.37865 4.54014 4.61096 4.69623 4.75591 4.82611 5.01913 5.06493 5.19689 5.26172 5.27147 5.40360 5.48425 5.53720 5.60602 5.63968 5.67415 5.72158 5.82964 6.03109 6.23276 6.28323 6.39445 6.46539 6.58112 6.62055 6.77141 6.87463 7.17725 7.49842 7.65625 7.77333 8.29413 8.43487 9.05503 9.67785 10.23425 11.16269 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.003211 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.351121 B = 8718.487131 C = 9289.985793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.131 3.869 11 C 0.083 3.917 12 N -0.594 5.594 13 C 0.513 3.487 14 O -0.532 6.532 15 C 0.031 3.969 16 H 0.076 0.924 17 C 0.080 3.920 18 O -0.379 6.379 19 C 0.061 3.939 20 C 0.001 3.999 21 N -0.507 5.507 22 C -0.001 4.001 23 C 0.264 3.736 24 F -0.207 7.207 25 F -0.193 7.193 26 C 0.087 3.913 27 C 0.158 3.842 28 H 0.256 0.744 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -18.149 1.636 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.004 3.996 11 C -0.041 4.041 12 N -0.327 5.327 13 C 0.299 3.701 14 O -0.408 6.408 15 C -0.081 4.081 16 H 0.094 0.906 17 C 0.002 3.998 18 O -0.297 6.297 19 C -0.016 4.016 20 C -0.126 4.126 21 N -0.234 5.234 22 C -0.129 4.129 23 C 0.210 3.790 24 F -0.188 7.188 25 F -0.174 7.174 26 C -0.036 4.036 27 C 0.031 3.969 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.525 -18.076 2.421 18.245 hybrid contribution 0.484 1.001 -0.953 1.464 sum -0.041 -17.075 1.468 17.138 Atomic orbital electron populations 1.69992 1.05328 1.25797 1.53515 1.25080 0.95336 0.98564 1.00492 0.86256 0.79134 0.83344 0.77776 1.21323 1.21453 1.20382 1.19196 0.92282 0.84416 1.42840 0.91416 1.44010 1.33940 1.01582 1.51796 1.21259 0.98465 0.87505 0.92374 1.22518 0.87943 1.00371 0.93305 1.48125 1.30671 1.06903 1.46977 1.20020 0.84439 0.84638 0.81033 1.90664 1.23976 1.86688 1.39503 1.22441 0.92958 0.91548 1.01158 0.90646 1.22500 0.95877 0.85021 0.96367 1.88010 1.33543 1.19280 1.88873 1.22749 0.88109 0.91588 0.99104 1.23407 0.99695 0.91597 0.97914 1.62030 1.09121 1.01992 1.50218 1.23444 0.94583 0.97291 0.97577 1.21977 0.94078 0.84072 0.78873 1.92938 1.81446 1.68518 1.75901 1.93009 1.90144 1.85296 1.48967 1.22540 0.99777 0.82694 0.98576 1.21228 0.88520 0.98730 0.88375 0.93393 0.96137 0.91366 0.91177 0.90935 0.87673 0.91375 0.88140 0.91975 0.93238 0.87735 0.86040 0.91613 0.86396 0.92009 0.90047 0.87832 0.95991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 11.05 55.49 0.61 -24.47 16 2 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 3 Si 0.91 20.75 29.58 -169.99 -5.03 15.72 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.26 -6.66 9.59 -15.06 -0.14 -6.80 16 8 H 0.07 1.70 7.88 -52.48 -0.41 1.29 16 9 N -0.59 -13.82 2.97 -172.04 -0.51 -14.33 16 10 C 0.13 2.48 6.67 -3.59 -0.02 2.45 16 11 C 0.08 1.27 6.48 -3.59 -0.02 1.25 16 12 N -0.59 -10.07 2.95 -172.48 -0.51 -10.58 16 13 C 0.51 8.42 6.12 -10.99 -0.07 8.35 16 14 O -0.53 -10.29 14.57 5.56 0.08 -10.20 16 15 C 0.03 0.41 1.56 -68.75 -0.11 0.30 16 16 H 0.08 0.97 6.05 -51.93 -0.31 0.65 16 17 C 0.08 0.98 6.28 37.21 0.23 1.22 16 18 O -0.38 -4.61 10.83 -35.23 -0.38 -4.99 16 19 C 0.06 0.63 7.01 37.20 0.26 0.89 16 20 C 0.00 0.02 4.19 -3.71 -0.02 0.00 16 21 N -0.51 -6.63 4.27 -227.72 -0.97 -7.60 16 22 C 0.00 -0.01 5.03 -3.82 -0.02 -0.03 16 23 C 0.26 2.62 5.13 37.16 0.19 2.81 16 24 F -0.21 -2.14 13.97 2.25 0.03 -2.11 16 25 F -0.19 -2.34 16.33 2.25 0.04 -2.30 16 26 C 0.09 1.67 6.59 -3.59 -0.02 1.64 16 27 C 0.16 3.61 5.50 -3.60 -0.02 3.59 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.91 5.36 -51.93 -0.28 0.63 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.55 7.89 -51.93 -0.41 0.14 16 38 H 0.10 1.14 4.98 -51.93 -0.26 0.88 16 39 H 0.12 1.70 6.59 -51.93 -0.34 1.36 16 40 H 0.07 0.75 8.01 -51.93 -0.42 0.34 16 41 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.56 7.00 -51.93 -0.36 1.20 16 44 H 0.10 2.64 5.90 -51.93 -0.31 2.33 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -30.72 352.16 -7.63 -38.35 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.45 Total: 1.51 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 0.15 Total: 15.71 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -1.38 Total: -56.99 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.30 Total: -15.19 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.07 Total: -4.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.72 -7.63 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408351086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.097 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds