Wall clock time and date at job start Tue Mar 31 2020 17:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00241 * 2 1 4 4 H 1.48504 * 109.46628 * 269.99450 * 3 2 1 5 5 H 1.48500 * 109.47183 * 29.99160 * 3 2 1 6 6 H 1.48492 * 109.47077 * 149.99776 * 3 2 1 7 7 C 1.38810 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00069 * 164.19287 * 7 2 1 9 9 N 1.36941 * 120.00074 * 344.20008 * 7 2 1 10 10 C 1.46968 * 120.59118 * 152.06711 * 9 7 2 11 11 C 1.53374 * 108.63426 * 125.04811 * 10 9 7 12 12 N 1.46969 * 108.63306 * 49.42399 * 11 10 9 13 13 C 1.34771 * 120.59701 * 124.79816 * 12 11 10 14 14 O 1.21273 * 120.00365 * 184.86718 * 13 12 11 15 15 C 1.50705 * 119.99629 * 4.86509 * 13 12 11 16 16 H 1.09004 * 109.50875 * 324.97189 * 15 13 12 17 17 C 1.53098 * 109.50438 * 85.06089 * 15 13 12 18 18 O 1.43021 * 109.25530 * 176.78174 * 17 15 13 19 19 C 1.43014 * 113.73873 * 301.32799 * 18 17 15 20 20 C 1.53091 * 109.25855 * 58.67395 * 19 18 17 21 21 N 1.47013 * 109.50791 * 204.88525 * 15 13 12 22 22 C 1.46897 * 111.00071 * 57.67127 * 21 15 13 23 23 C 1.53004 * 109.47239 * 165.69892 * 22 21 15 24 24 F 1.39898 * 109.46691 * 293.29330 * 23 22 21 25 25 F 1.39895 * 109.46837 * 53.29804 * 23 22 21 26 26 C 1.46966 * 118.80989 * 304.77111 * 12 11 10 27 27 C 1.46959 * 120.59379 * 332.34717 * 9 7 2 28 28 H 0.97006 * 119.99799 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.60765 * 244.79301 * 10 9 7 30 30 H 1.08996 * 109.61213 * 5.30332 * 10 9 7 31 31 H 1.08995 * 109.60723 * 289.67811 * 11 10 9 32 32 H 1.08996 * 109.60974 * 169.16712 * 11 10 9 33 33 H 1.08998 * 109.50605 * 296.71385 * 17 15 13 34 34 H 1.08998 * 109.51038 * 56.80695 * 17 15 13 35 35 H 1.08997 * 109.50380 * 178.60838 * 19 18 17 36 36 H 1.09000 * 109.50396 * 298.73655 * 19 18 17 37 37 H 1.09003 * 109.51074 * 63.08424 * 20 19 18 38 38 H 1.08998 * 109.50497 * 183.17323 * 20 19 18 39 39 H 1.09001 * 109.47267 * 285.70004 * 22 21 15 40 40 H 1.09003 * 109.47045 * 45.70102 * 22 21 15 41 41 H 1.09004 * 109.46973 * 173.29528 * 23 22 21 42 42 H 1.09002 * 109.61396 * 295.48257 * 26 12 11 43 43 H 1.09001 * 109.74760 * 175.05851 * 26 12 11 44 44 H 1.08996 * 109.61080 * 354.69539 * 27 9 7 45 45 H 1.09001 * 109.60960 * 115.03727 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0596 -1.2201 -0.2542 9 7 1.3642 -2.3655 0.3240 10 6 1.8213 -3.6514 -0.2215 11 6 2.0844 -4.6126 0.9444 12 7 0.9179 -4.5969 1.8382 13 6 0.2791 -5.7412 2.1526 14 8 -0.7337 -5.7070 2.8188 15 6 0.8233 -7.0633 1.6761 16 1 1.2685 -6.9392 0.6889 17 6 1.8872 -7.5618 2.6577 18 8 2.3461 -8.8508 2.2413 19 6 1.3093 -9.8326 2.1603 20 6 0.2396 -9.3571 1.1737 21 7 -0.2680 -8.0456 1.6024 22 6 -1.3383 -7.5776 0.7117 23 6 -2.2697 -8.7443 0.3767 24 9 -1.5789 -9.6860 -0.3935 25 9 -2.7108 -9.3438 1.5612 26 6 0.4609 -3.3110 2.3837 27 6 0.1978 -2.3498 1.2178 28 1 -0.4850 0.8401 -0.0004 29 1 1.0518 -4.0671 -0.8719 30 1 2.7409 -3.5026 -0.7875 31 1 2.9695 -4.2895 1.4922 32 1 2.2370 -5.6210 0.5598 33 1 2.7247 -6.8644 2.6718 34 1 1.4561 -7.6333 3.6563 35 1 1.7289 -10.7773 1.8148 36 1 0.8612 -9.9707 3.1443 37 1 0.6753 -9.2703 0.1783 38 1 -0.5797 -10.0755 1.1510 39 1 -1.9060 -6.7905 1.2081 40 1 -0.9013 -7.1862 -0.2070 41 1 -3.1277 -8.3746 -0.1848 42 1 1.2304 -2.8952 3.0341 43 1 -0.4580 -3.4575 2.9515 44 1 0.0452 -1.3414 1.6024 45 1 -0.6879 -2.6700 0.6691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408351086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:03 Heat of formation + Delta-G solvation = -140.902449 kcal Electronic energy + Delta-G solvation = -31082.561707 eV Core-core repulsion = 26578.913027 eV Total energy + Delta-G solvation = -4503.648679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.14349 -47.98018 -41.79292 -39.98721 -38.44720 -36.87103 -35.70640 -33.27795 -32.88274 -31.65510 -31.35712 -28.78312 -27.34943 -26.22673 -25.25123 -24.40741 -23.48832 -22.68284 -21.50915 -20.20107 -19.17274 -18.65764 -18.38531 -17.98342 -17.84196 -17.25645 -16.99105 -16.75639 -16.53791 -16.21601 -15.81277 -15.65385 -15.49941 -15.35252 -15.12094 -15.02634 -14.89795 -14.80549 -14.36231 -14.12937 -13.98851 -13.48141 -13.38738 -13.19640 -13.09739 -12.97523 -12.67615 -12.57388 -12.46312 -12.32896 -12.08585 -12.01649 -11.85300 -11.68931 -11.49424 -10.98054 -10.62568 -10.57568 -9.86361 -9.56338 -8.67677 -7.88667 -5.37706 1.43369 1.48683 1.50868 1.59487 1.81475 2.41744 2.50557 2.75532 2.79165 3.21054 3.27112 3.39335 3.49490 3.54674 3.66196 3.78932 3.87296 3.92834 4.16478 4.20548 4.21077 4.27113 4.37009 4.38291 4.46404 4.52612 4.58409 4.63169 4.66688 4.77991 4.78774 4.83166 4.89596 5.03314 5.22130 5.42310 5.49757 5.60652 5.67223 5.71337 5.98226 6.34754 6.43477 7.08580 7.10642 7.78523 8.30564 9.16222 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.003211 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.351121 B = 8718.487131 C = 9289.985793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.126 3.874 11 C 0.095 3.905 12 N -0.597 5.597 13 C 0.516 3.484 14 O -0.564 6.564 15 C 0.040 3.960 16 H 0.088 0.912 17 C 0.084 3.916 18 O -0.383 6.383 19 C 0.058 3.942 20 C 0.006 3.994 21 N -0.525 5.525 22 C -0.002 4.002 23 C 0.267 3.733 24 F -0.206 7.206 25 F -0.206 7.206 26 C 0.104 3.896 27 C 0.170 3.830 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.128 0.872 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.154 0.846 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.073 0.927 45 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -19.949 1.249 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.000 4.000 11 C -0.029 4.029 12 N -0.330 5.330 13 C 0.304 3.696 14 O -0.442 6.442 15 C -0.072 4.072 16 H 0.105 0.895 17 C 0.006 3.994 18 O -0.301 6.301 19 C -0.018 4.018 20 C -0.121 4.121 21 N -0.252 5.252 22 C -0.131 4.131 23 C 0.214 3.786 24 F -0.188 7.188 25 F -0.188 7.188 26 C -0.020 4.020 27 C 0.043 3.957 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.171 0.829 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 1.302 -19.925 2.024 20.070 hybrid contribution -0.101 1.484 -0.865 1.721 sum 1.201 -18.441 1.159 18.517 Atomic orbital electron populations 1.70156 1.06799 1.25946 1.55405 1.25812 0.95966 1.01598 1.01084 0.85269 0.78146 0.79480 0.77480 1.21295 1.22267 1.19195 1.19575 0.92782 0.85410 1.41424 0.90622 1.44246 1.33731 1.02737 1.52408 1.21461 0.98543 0.86144 0.93835 1.22500 0.87421 1.01308 0.91660 1.48151 1.31258 1.06251 1.47319 1.20543 0.83620 0.85373 0.80096 1.90653 1.25438 1.87214 1.40918 1.22382 0.93267 0.89769 1.01780 0.89464 1.22495 0.95889 0.85651 0.95383 1.88014 1.34084 1.19234 1.88762 1.22933 0.87799 0.92173 0.98919 1.23421 0.99955 0.90449 0.98254 1.62010 1.09328 1.02694 1.51155 1.23403 0.94643 0.97736 0.97303 1.22168 0.94624 0.83180 0.78672 1.92934 1.81646 1.68478 1.75734 1.92981 1.90243 1.85497 1.50063 1.22121 0.99903 0.83193 0.96830 1.20908 0.87689 0.97928 0.89174 0.94074 0.96826 0.90107 0.89921 0.87322 0.86137 0.92425 0.85469 0.92286 0.92827 0.87553 0.88459 0.90982 0.82868 0.91340 0.90593 0.90924 0.99027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.71 11.05 21.65 0.24 -53.47 16 2 C -0.05 -2.63 4.96 84.86 0.42 -2.21 16 3 Si 0.97 42.94 29.58 68.60 2.03 44.97 16 4 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.26 -13.45 9.59 84.03 0.81 -12.65 16 8 H 0.08 3.70 7.88 -2.91 -0.02 3.67 16 9 N -0.61 -28.43 2.97 -698.21 -2.08 -30.50 16 10 C 0.13 4.57 6.67 86.42 0.58 5.14 16 11 C 0.09 2.64 6.48 86.42 0.56 3.20 16 12 N -0.60 -19.52 2.95 -818.01 -2.41 -21.93 16 13 C 0.52 16.38 6.12 87.66 0.54 16.92 16 14 O -0.56 -21.85 14.57 -3.01 -0.04 -21.89 16 15 C 0.04 0.98 1.56 44.18 0.07 1.04 16 16 H 0.09 1.94 6.05 -2.39 -0.01 1.93 16 17 C 0.08 1.84 6.28 72.02 0.45 2.29 16 18 O -0.38 -8.15 10.83 -148.98 -1.61 -9.76 16 19 C 0.06 1.04 7.01 72.01 0.50 1.55 16 20 C 0.01 0.12 4.19 86.31 0.36 0.49 16 21 N -0.53 -12.87 4.27 -874.37 -3.73 -16.60 16 22 C 0.00 -0.05 5.03 86.31 0.43 0.38 16 23 C 0.27 4.85 5.13 71.98 0.37 5.22 16 24 F -0.21 -3.82 13.97 44.97 0.63 -3.19 16 25 F -0.21 -4.77 16.33 44.97 0.73 -4.03 16 26 C 0.10 3.98 6.59 86.42 0.57 4.55 16 27 C 0.17 7.99 5.50 86.42 0.48 8.47 16 28 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 2.28 5.36 -2.39 -0.01 2.27 16 33 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.03 7.89 -2.39 -0.02 1.01 16 38 H 0.11 2.08 4.98 -2.39 -0.01 2.07 16 39 H 0.10 2.74 6.59 -2.39 -0.02 2.72 16 40 H 0.07 1.54 8.01 -2.39 -0.02 1.52 16 41 H 0.15 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.08 2.99 7.00 -2.39 -0.02 2.98 16 44 H 0.07 3.88 5.90 -2.39 -0.01 3.86 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: -1.00 -67.34 352.16 0.90 -66.44 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.01 Total: 15.57 kcal Atomic # 6 Polarization: 28.25 SS G_CDS: 6.14 Total: 34.39 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -7.98 Total: -122.51 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.66 Total: -31.65 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.36 Total: -7.22 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.34 0.90 -66.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408351086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.460 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds