Wall clock time and date at job start Tue Mar 31 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00434 * 2 1 4 4 C 1.52994 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47342 * 65.00200 * 4 3 2 6 6 C 1.37097 * 120.00210 * 92.58219 * 5 4 3 7 7 H 1.07999 * 120.00427 * 225.05698 * 6 5 4 8 8 C 1.38951 * 119.99768 * 45.04767 * 6 5 4 9 9 N 1.31409 * 120.00487 * 357.48387 * 8 6 5 10 10 Si 1.86806 * 119.99877 * 177.48204 * 8 6 5 11 11 H 1.48504 * 109.46945 * 60.00021 * 10 8 6 12 12 H 1.48493 * 109.47165 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46903 * 300.00326 * 10 8 6 14 14 C 1.34778 * 119.99930 * 272.85647 * 5 4 3 15 15 O 1.21292 * 119.99960 * 5.20166 * 14 5 4 16 16 C 1.50705 * 119.99843 * 185.20084 * 14 5 4 17 17 H 1.08997 * 109.43649 * 335.41331 * 16 14 5 18 18 C 1.53072 * 109.43598 * 95.32951 * 16 14 5 19 19 C 1.53408 * 108.28813 * 168.25431 * 18 16 14 20 20 C 1.52990 * 109.68787 * 54.97221 * 19 18 16 21 21 C 1.53009 * 109.68095 * 175.49537 * 19 18 16 22 22 O 1.42835 * 108.37383 * 295.24834 * 19 18 16 23 23 C 1.35847 * 117.85705 * 49.15204 * 22 19 18 24 24 C 1.39142 * 118.49989 * 162.98001 * 23 22 19 25 25 C 1.37960 * 120.21821 * 179.82116 * 24 23 22 26 26 C 1.38287 * 119.96039 * 359.97438 * 25 24 23 27 27 C 1.38110 * 119.98242 * 0.07995 * 26 25 24 28 28 C 1.38376 * 121.80846 * 342.92806 * 23 22 19 29 29 H 1.08998 * 109.46892 * 59.99470 * 1 2 3 30 30 H 1.08995 * 109.47496 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46330 * 299.99674 * 1 2 3 32 32 H 1.09005 * 109.46491 * 60.00056 * 3 2 1 33 33 H 1.08995 * 109.47264 * 300.00441 * 3 2 1 34 34 H 1.09004 * 109.47463 * 305.00200 * 4 3 2 35 35 H 1.09001 * 109.47220 * 185.00609 * 4 3 2 36 36 H 0.96994 * 120.00509 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.70061 * 287.94962 * 18 16 14 38 38 H 1.09003 * 109.69980 * 48.55251 * 18 16 14 39 39 H 1.08999 * 109.47215 * 60.00302 * 20 19 18 40 40 H 1.09006 * 109.47293 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47435 * 300.00096 * 20 19 18 42 42 H 1.08997 * 109.46878 * 59.99851 * 21 19 18 43 43 H 1.08999 * 109.47048 * 179.97438 * 21 19 18 44 44 H 1.09000 * 109.47173 * 299.99735 * 21 19 18 45 45 H 1.07998 * 119.88751 * 359.79669 * 24 23 22 46 46 H 1.08007 * 120.02249 * 179.97438 * 25 24 23 47 47 H 1.08002 * 120.01403 * 180.02562 * 26 25 24 48 48 H 1.07997 * 119.84383 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3173 1.3493 -2.3235 7 1 3.9593 1.1005 -3.3116 8 6 5.1242 2.4652 -2.1375 9 7 5.5191 2.7965 -0.9288 10 14 5.6475 3.4946 -3.6059 11 1 4.4429 4.0324 -4.2879 12 1 6.4989 4.6198 -3.1434 13 1 6.4170 2.6493 -4.5539 14 6 4.0396 -0.7781 -1.3537 15 8 3.6439 -1.4744 -0.4428 16 6 4.6027 -1.4141 -2.5986 17 1 4.4981 -0.7254 -3.4369 18 6 6.0844 -1.7321 -2.3825 19 6 6.5557 -2.6338 -3.5307 20 6 6.2513 -1.9625 -4.8714 21 6 8.0607 -2.8804 -3.4078 22 8 5.8553 -3.8757 -3.4444 23 6 4.5050 -3.8344 -3.3024 24 6 3.7733 -4.9864 -3.5737 25 6 2.4004 -4.9852 -3.4374 26 6 1.7479 -3.8362 -3.0295 27 6 2.4708 -2.6905 -2.7605 28 6 3.8490 -2.6852 -2.8975 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.8516 0.5680 0.8409 35 1 3.9787 2.1764 0.0890 36 1 6.0826 3.5752 -0.7990 37 1 6.6621 -0.8078 -2.3804 38 1 6.2144 -2.2494 -1.4319 39 1 6.7720 -1.0065 -4.9256 40 1 6.5879 -2.6058 -5.6845 41 1 5.1776 -1.7969 -4.9593 42 1 8.2726 -3.3670 -2.4558 43 1 8.3917 -3.5215 -4.2247 44 1 8.5899 -1.9286 -3.4551 45 1 4.2818 -5.8843 -3.8923 46 1 1.8356 -5.8811 -3.6492 47 1 0.6733 -3.8344 -2.9222 48 1 1.9588 -1.7944 -2.4425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413860413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:11 Heat of formation + Delta-G solvation = -89.630684 kcal Electronic energy + Delta-G solvation = -31162.840437 eV Core-core repulsion = 27183.351847 eV Total energy + Delta-G solvation = -3979.488590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.76610 -38.44759 -37.43047 -36.84114 -34.76517 -34.12955 -32.12286 -31.57751 -29.80943 -29.20584 -27.93905 -27.19854 -25.76490 -24.89820 -24.14914 -22.56710 -22.05525 -21.31561 -19.21957 -18.62169 -17.29747 -16.77384 -16.25618 -15.80073 -15.58809 -15.31461 -15.15983 -14.76214 -14.44239 -14.36488 -14.12265 -13.90672 -13.54952 -13.36105 -13.03263 -12.75131 -12.68621 -12.49428 -12.03828 -11.97219 -11.89483 -11.80082 -11.62618 -11.44448 -11.27170 -11.20352 -11.07869 -10.98070 -10.89401 -10.48554 -10.46616 -10.28187 -10.21961 -10.15027 -9.90123 -9.08966 -8.92931 -8.39310 -8.17257 -7.67530 -7.41075 -6.35510 -4.23065 1.79600 1.90141 3.06756 3.14544 3.14814 3.56053 3.93453 4.05307 4.19493 4.60129 4.79606 4.88255 4.98421 5.08740 5.14972 5.28008 5.35316 5.45621 5.63209 5.70850 5.73047 5.74598 5.76364 5.79253 5.87504 5.94787 6.00062 6.03226 6.04786 6.10706 6.16360 6.19891 6.25523 6.32095 6.42404 6.46990 6.50720 6.54952 6.68355 6.73949 6.94299 6.97114 7.09533 7.23606 7.25523 7.50914 7.90558 7.95862 8.02457 8.39778 9.06278 9.55554 10.01672 10.61516 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.006359 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.960011 B = 4401.944733 C = 6488.397981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.048 3.952 4 C 0.111 3.889 5 N -0.444 5.444 6 C -0.331 4.331 7 H 0.083 0.917 8 C 0.046 3.954 9 N -0.873 5.873 10 Si 0.913 3.087 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.494 3.506 15 O -0.568 6.568 16 C -0.055 4.055 17 H 0.106 0.894 18 C -0.125 4.125 19 C 0.114 3.886 20 C -0.173 4.173 21 C -0.135 4.135 22 O -0.314 6.314 23 C 0.136 3.864 24 C -0.161 4.161 25 C -0.097 4.097 26 C -0.160 4.160 27 C -0.055 4.055 28 C -0.125 4.125 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.136 0.864 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 -5.983 -5.623 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.030 4.030 4 C -0.013 4.013 5 N -0.164 5.164 6 C -0.459 4.459 7 H 0.101 0.899 8 C -0.159 4.159 9 N -0.511 5.511 10 Si 0.739 3.261 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.281 3.719 15 O -0.450 6.450 16 C -0.076 4.076 17 H 0.123 0.877 18 C -0.163 4.163 19 C 0.076 3.924 20 C -0.231 4.231 21 C -0.192 4.192 22 O -0.229 6.229 23 C 0.091 3.909 24 C -0.180 4.180 25 C -0.115 4.115 26 C -0.178 4.178 27 C -0.073 4.073 28 C -0.126 4.126 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.153 0.847 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.134 0.866 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.301 -6.467 -5.060 8.314 hybrid contribution -0.157 1.259 -0.635 1.419 sum -1.458 -5.208 -5.695 7.854 Atomic orbital electron populations 1.22618 0.83884 1.01497 0.98654 1.88234 1.17001 1.27862 1.95000 1.23174 0.96998 0.84343 0.98464 1.21798 0.88973 1.02961 0.87520 1.43240 1.58120 1.03120 1.11953 1.19323 1.29299 1.08654 0.88616 0.89927 1.25505 0.95004 0.98284 0.97070 1.69519 1.34225 1.26943 1.20429 0.86218 0.78993 0.79420 0.81432 1.19878 1.20794 1.19584 1.20018 0.80923 0.83144 0.87808 1.90592 1.50850 1.62318 1.41226 1.20069 0.94138 0.93596 0.99748 0.87673 1.22037 0.95340 1.00748 0.98161 1.21872 0.92301 0.82778 0.95410 1.22404 1.03264 1.01222 0.96181 1.21750 0.91826 1.02751 1.02877 1.85941 1.16330 1.32536 1.88064 1.18600 0.82393 0.93745 0.96189 1.20409 0.93552 0.97191 1.06855 1.20760 0.93383 0.97908 0.99415 1.20910 0.99556 0.93432 1.03893 1.20947 0.92861 0.98435 0.95073 1.19622 0.94625 0.94894 1.03492 0.95191 0.90685 0.95300 0.94672 0.93828 0.92714 0.84719 0.91817 0.89027 0.90757 0.90640 0.92085 0.91506 0.91641 0.91805 0.90339 0.86009 0.86219 0.86597 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.85 8.95 -52.38 -0.47 -8.32 16 3 C 0.05 1.00 6.28 37.15 0.23 1.24 16 4 C 0.11 2.63 5.43 -4.05 -0.02 2.61 16 5 N -0.44 -10.82 2.52 -114.81 -0.29 -11.11 16 6 C -0.33 -7.92 8.27 -14.93 -0.12 -8.04 16 7 H 0.08 1.92 6.78 -52.49 -0.36 1.57 16 8 C 0.05 1.09 5.37 -17.47 -0.09 0.99 16 9 N -0.87 -21.60 10.77 55.50 0.60 -21.01 16 10 Si 0.91 18.39 29.55 -169.99 -5.02 13.36 16 11 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 14 C 0.49 11.90 5.25 -10.98 -0.06 11.84 16 15 O -0.57 -15.17 14.17 -11.60 -0.16 -15.33 16 16 C -0.05 -1.13 1.63 -92.85 -0.15 -1.28 16 17 H 0.11 2.17 5.01 -51.93 -0.26 1.91 16 18 C -0.12 -2.36 4.39 -26.48 -0.12 -2.48 16 19 C 0.11 1.81 1.13 -90.41 -0.10 1.71 16 20 C -0.17 -2.53 8.14 37.15 0.30 -2.22 16 21 C -0.13 -1.74 8.88 37.16 0.33 -1.41 16 22 O -0.31 -5.52 9.68 -19.26 -0.19 -5.71 16 23 C 0.14 2.50 6.02 -39.19 -0.24 2.26 16 24 C -0.16 -2.61 9.94 -39.35 -0.39 -3.00 16 25 C -0.10 -1.44 10.04 -39.67 -0.40 -1.84 16 26 C -0.16 -2.62 10.04 -39.61 -0.40 -3.02 16 27 C -0.05 -1.07 8.58 -39.53 -0.34 -1.41 16 28 C -0.13 -2.48 4.54 -104.44 -0.47 -2.96 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 1.38 7.59 -51.93 -0.39 0.98 16 35 H 0.14 3.32 5.21 -51.93 -0.27 3.05 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 37 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.06 5.88 -51.93 -0.31 0.75 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 47 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 48 H 0.12 2.58 7.34 -52.49 -0.39 2.19 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -28.95 379.86 -8.18 -37.13 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.45 Total: 10.63 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.92 Total: -5.37 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.31 Total: -32.12 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.82 Total: -29.36 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.95 -8.18 -37.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413860413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.497 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds