Wall clock time and date at job start Tue Mar 31 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00434 * 2 1 4 4 C 1.52994 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47342 * 65.00200 * 4 3 2 6 6 C 1.37097 * 120.00210 * 92.58219 * 5 4 3 7 7 H 1.07999 * 120.00427 * 225.05698 * 6 5 4 8 8 C 1.38951 * 119.99768 * 45.04767 * 6 5 4 9 9 N 1.31409 * 120.00487 * 357.48387 * 8 6 5 10 10 Si 1.86806 * 119.99877 * 177.48204 * 8 6 5 11 11 H 1.48504 * 109.46945 * 60.00021 * 10 8 6 12 12 H 1.48493 * 109.47165 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46903 * 300.00326 * 10 8 6 14 14 C 1.34778 * 119.99930 * 272.85647 * 5 4 3 15 15 O 1.21292 * 119.99960 * 5.20166 * 14 5 4 16 16 C 1.50705 * 119.99843 * 185.20084 * 14 5 4 17 17 H 1.08997 * 109.43649 * 335.41331 * 16 14 5 18 18 C 1.53072 * 109.43598 * 95.32951 * 16 14 5 19 19 C 1.53408 * 108.28813 * 168.25431 * 18 16 14 20 20 C 1.52990 * 109.68787 * 54.97221 * 19 18 16 21 21 C 1.53009 * 109.68095 * 175.49537 * 19 18 16 22 22 O 1.42835 * 108.37383 * 295.24834 * 19 18 16 23 23 C 1.35847 * 117.85705 * 49.15204 * 22 19 18 24 24 C 1.39142 * 118.49989 * 162.98001 * 23 22 19 25 25 C 1.37960 * 120.21821 * 179.82116 * 24 23 22 26 26 C 1.38287 * 119.96039 * 359.97438 * 25 24 23 27 27 C 1.38110 * 119.98242 * 0.07995 * 26 25 24 28 28 C 1.38376 * 121.80846 * 342.92806 * 23 22 19 29 29 H 1.08998 * 109.46892 * 59.99470 * 1 2 3 30 30 H 1.08995 * 109.47496 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46330 * 299.99674 * 1 2 3 32 32 H 1.09005 * 109.46491 * 60.00056 * 3 2 1 33 33 H 1.08995 * 109.47264 * 300.00441 * 3 2 1 34 34 H 1.09004 * 109.47463 * 305.00200 * 4 3 2 35 35 H 1.09001 * 109.47220 * 185.00609 * 4 3 2 36 36 H 0.96994 * 120.00509 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.70061 * 287.94962 * 18 16 14 38 38 H 1.09003 * 109.69980 * 48.55251 * 18 16 14 39 39 H 1.08999 * 109.47215 * 60.00302 * 20 19 18 40 40 H 1.09006 * 109.47293 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47435 * 300.00096 * 20 19 18 42 42 H 1.08997 * 109.46878 * 59.99851 * 21 19 18 43 43 H 1.08999 * 109.47048 * 179.97438 * 21 19 18 44 44 H 1.09000 * 109.47173 * 299.99735 * 21 19 18 45 45 H 1.07998 * 119.88751 * 359.79669 * 24 23 22 46 46 H 1.08007 * 120.02249 * 179.97438 * 25 24 23 47 47 H 1.08002 * 120.01403 * 180.02562 * 26 25 24 48 48 H 1.07997 * 119.84383 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3173 1.3493 -2.3235 7 1 3.9593 1.1005 -3.3116 8 6 5.1242 2.4652 -2.1375 9 7 5.5191 2.7965 -0.9288 10 14 5.6475 3.4946 -3.6059 11 1 4.4429 4.0324 -4.2879 12 1 6.4989 4.6198 -3.1434 13 1 6.4170 2.6493 -4.5539 14 6 4.0396 -0.7781 -1.3537 15 8 3.6439 -1.4744 -0.4428 16 6 4.6027 -1.4141 -2.5986 17 1 4.4981 -0.7254 -3.4369 18 6 6.0844 -1.7321 -2.3825 19 6 6.5557 -2.6338 -3.5307 20 6 6.2513 -1.9625 -4.8714 21 6 8.0607 -2.8804 -3.4078 22 8 5.8553 -3.8757 -3.4444 23 6 4.5050 -3.8344 -3.3024 24 6 3.7733 -4.9864 -3.5737 25 6 2.4004 -4.9852 -3.4374 26 6 1.7479 -3.8362 -3.0295 27 6 2.4708 -2.6905 -2.7605 28 6 3.8490 -2.6852 -2.8975 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.8516 0.5680 0.8409 35 1 3.9787 2.1764 0.0890 36 1 6.0826 3.5752 -0.7990 37 1 6.6621 -0.8078 -2.3804 38 1 6.2144 -2.2494 -1.4319 39 1 6.7720 -1.0065 -4.9256 40 1 6.5879 -2.6058 -5.6845 41 1 5.1776 -1.7969 -4.9593 42 1 8.2726 -3.3670 -2.4558 43 1 8.3917 -3.5215 -4.2247 44 1 8.5899 -1.9286 -3.4551 45 1 4.2818 -5.8843 -3.8923 46 1 1.8356 -5.8811 -3.6492 47 1 0.6733 -3.8344 -2.9222 48 1 1.9588 -1.7944 -2.4425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413860413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:10 Heat of formation + Delta-G solvation = -104.411005 kcal Electronic energy + Delta-G solvation = -31163.481360 eV Core-core repulsion = 27183.351847 eV Total energy + Delta-G solvation = -3980.129513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.18652 -40.21788 -38.73974 -38.47704 -36.61324 -35.59174 -33.48566 -33.46279 -31.20968 -30.84626 -29.32692 -28.30736 -27.24657 -26.74179 -25.68874 -24.01446 -23.37801 -22.95363 -21.02480 -20.03198 -18.81346 -18.35973 -18.02326 -17.22357 -17.17166 -16.97307 -16.55772 -16.14884 -16.07455 -15.98761 -15.71622 -15.27072 -14.98436 -14.84338 -14.61422 -14.26785 -14.05157 -13.87296 -13.52120 -13.39494 -13.18014 -13.08884 -13.01277 -12.93613 -12.84558 -12.80755 -12.61374 -12.45746 -12.31353 -12.18325 -12.06622 -11.88708 -11.71893 -11.56752 -11.35680 -10.91368 -10.52641 -10.15696 -9.64925 -9.32637 -9.02792 -8.20269 -6.14687 0.45567 0.55403 1.46501 1.48416 1.56839 2.12831 2.28564 2.32824 2.78853 3.01278 3.07080 3.19570 3.62465 3.76672 3.77725 3.93657 4.02136 4.19407 4.26032 4.27711 4.37209 4.38222 4.46652 4.52257 4.53656 4.56617 4.60085 4.67350 4.71088 4.74544 4.77859 4.83416 4.84735 4.91212 4.98511 5.08135 5.11900 5.15478 5.20392 5.29118 5.33625 5.43924 5.57453 5.61048 5.71532 5.96177 6.14344 6.39994 6.52836 6.56073 7.17950 7.66824 8.14093 8.77390 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.006359 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.960011 B = 4401.944733 C = 6488.397981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.059 3.941 4 C 0.110 3.890 5 N -0.452 5.452 6 C -0.345 4.345 7 H 0.086 0.914 8 C 0.011 3.989 9 N -0.900 5.900 10 Si 0.977 3.023 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.485 3.515 15 O -0.603 6.603 16 C -0.045 4.045 17 H 0.100 0.900 18 C -0.120 4.120 19 C 0.114 3.886 20 C -0.169 4.169 21 C -0.131 4.131 22 O -0.317 6.317 23 C 0.121 3.879 24 C -0.161 4.161 25 C -0.083 4.083 26 C -0.160 4.160 27 C -0.079 4.079 28 C -0.150 4.150 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.027 0.973 35 H 0.126 0.874 36 H 0.273 0.727 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.150 0.850 46 H 0.164 0.836 47 H 0.140 0.860 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -7.217 -7.845 10.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.019 4.019 4 C -0.013 4.013 5 N -0.171 5.171 6 C -0.472 4.472 7 H 0.103 0.897 8 C -0.191 4.191 9 N -0.538 5.538 10 Si 0.800 3.200 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.183 1.183 14 C 0.274 3.726 15 O -0.488 6.488 16 C -0.066 4.066 17 H 0.117 0.883 18 C -0.158 4.158 19 C 0.077 3.923 20 C -0.226 4.226 21 C -0.188 4.188 22 O -0.232 6.232 23 C 0.076 3.924 24 C -0.179 4.179 25 C -0.101 4.101 26 C -0.178 4.178 27 C -0.097 4.097 28 C -0.152 4.152 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.167 0.833 46 H 0.182 0.818 47 H 0.158 0.842 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.406 -7.696 -7.289 10.693 hybrid contribution -0.212 1.606 0.130 1.625 sum -1.619 -6.090 -7.159 9.537 Atomic orbital electron populations 1.22830 0.81191 1.02816 1.00181 1.88184 1.20044 1.28049 1.95277 1.22961 0.94992 0.84563 0.99384 1.21714 0.91269 1.01617 0.86749 1.43445 1.58021 1.03538 1.12116 1.19531 1.30043 1.09053 0.88602 0.89680 1.26238 0.94478 0.98942 0.99483 1.69642 1.34518 1.27396 1.22246 0.85234 0.78643 0.77767 0.78333 1.19425 1.20793 1.18348 1.20611 0.80369 0.82960 0.88648 1.90539 1.52445 1.62981 1.42818 1.19935 0.95132 0.94092 0.97480 0.88257 1.21986 0.94342 1.00880 0.98589 1.22049 0.93838 0.81833 0.94594 1.22371 1.02303 1.02009 0.95932 1.21787 0.89425 1.04021 1.03598 1.85938 1.16049 1.33122 1.88078 1.18861 0.82873 0.94015 0.96700 1.20846 0.94202 0.97157 1.05716 1.21239 0.93174 0.98627 0.97031 1.21220 1.00786 0.92832 1.02964 1.20883 0.93049 0.98861 0.96927 1.19629 0.94936 0.95159 1.05451 0.94132 0.89561 0.93134 0.92234 0.94132 0.95417 0.85658 0.91664 0.89792 0.93336 0.89835 0.89772 0.93242 0.92060 0.89545 0.88968 0.83275 0.81825 0.84199 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.68 8.95 -132.59 -1.19 -18.87 16 3 C 0.06 2.52 6.28 71.98 0.45 2.98 16 4 C 0.11 5.52 5.43 86.38 0.47 5.99 16 5 N -0.45 -23.16 2.52 -635.55 -1.60 -24.77 16 6 C -0.34 -17.02 8.27 84.04 0.69 -16.33 16 7 H 0.09 4.08 6.78 -2.91 -0.02 4.06 16 8 C 0.01 0.51 5.37 84.93 0.46 0.97 16 9 N -0.90 -45.61 10.77 21.66 0.23 -45.37 16 10 Si 0.98 37.45 29.55 68.60 2.03 39.48 16 11 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 12 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 13 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 14 C 0.49 24.78 5.25 87.66 0.46 25.24 16 15 O -0.60 -34.23 14.17 13.33 0.19 -34.04 16 16 C -0.05 -1.97 1.63 -12.24 -0.02 -1.99 16 17 H 0.10 4.30 5.01 -2.39 -0.01 4.29 16 18 C -0.12 -4.70 4.39 30.76 0.14 -4.57 16 19 C 0.11 3.57 1.13 -10.66 -0.01 3.55 16 20 C -0.17 -4.70 8.14 71.98 0.59 -4.11 16 21 C -0.13 -3.16 8.88 71.99 0.64 -2.52 16 22 O -0.32 -10.83 9.68 -91.83 -0.89 -11.72 16 23 C 0.12 4.36 6.02 22.52 0.14 4.50 16 24 C -0.16 -4.78 9.94 22.42 0.22 -4.56 16 25 C -0.08 -2.22 10.04 22.22 0.22 -1.99 16 26 C -0.16 -5.03 10.04 22.25 0.22 -4.80 16 27 C -0.08 -3.14 8.58 22.30 0.19 -2.95 16 28 C -0.15 -6.13 4.54 -19.75 -0.09 -6.22 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.03 1.49 7.59 -2.38 -0.02 1.47 16 35 H 0.13 6.48 5.21 -2.39 -0.01 6.47 16 36 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.05 1.54 5.88 -2.39 -0.01 1.53 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 45 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 46 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 48 H 0.09 4.22 7.34 -2.91 -0.02 4.20 16 Total: -1.00 -65.90 379.86 5.74 -60.17 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: 0.95 Total: 39.83 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 6.02 Total: -4.72 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.37 Total: -70.14 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -1.89 Total: -64.62 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -65.90 5.74 -60.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413860413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.243 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds