Wall clock time and date at job start Tue Mar 31 2020 18:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99408 * 2 1 4 4 O 1.20824 * 120.00484 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99599 * 180.02562 * 3 2 1 6 6 C 1.52998 * 113.25302 * 312.94864 * 5 3 2 7 7 C 1.53513 * 114.16712 * 180.02562 * 5 3 2 8 8 N 1.47490 * 87.92911 * 220.13714 * 7 5 3 9 9 C 1.46890 * 110.99881 * 138.70112 * 8 7 5 10 10 C 1.50698 * 109.47146 * 169.99777 * 9 8 7 11 11 C 1.38289 * 119.97869 * 270.23400 * 10 9 8 12 12 C 1.38237 * 120.11494 * 180.27323 * 11 10 9 13 13 C 1.38167 * 120.05858 * 359.74537 * 12 11 10 14 14 C 1.38709 * 119.93745 * 0.02562 * 13 12 11 15 15 O 1.35906 * 120.05198 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00229 * 0.02562 * 15 14 13 17 17 C 1.52994 * 109.47206 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47149 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99936 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00355 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00355 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47463 * 89.99963 * 22 20 18 24 24 H 1.48500 * 109.47332 * 210.00437 * 22 20 18 25 25 H 1.48503 * 109.46959 * 330.00314 * 22 20 18 26 26 C 1.38125 * 119.96886 * 89.99848 * 10 9 8 27 27 C 1.47486 * 87.83218 * 27.00948 * 8 7 5 28 28 H 1.09001 * 109.47369 * 60.00222 * 1 2 3 29 29 H 1.09003 * 109.46780 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47144 * 299.99632 * 1 2 3 31 31 H 1.08996 * 109.47971 * 287.04685 * 6 5 3 32 32 H 1.09002 * 109.47285 * 47.05649 * 6 5 3 33 33 H 1.09000 * 109.46791 * 167.05081 * 6 5 3 34 34 H 1.09001 * 113.47538 * 105.37518 * 7 5 3 35 35 H 1.09000 * 113.47607 * 334.89748 * 7 5 3 36 36 H 1.09004 * 109.47265 * 50.00160 * 9 8 7 37 37 H 1.08998 * 109.47715 * 290.00188 * 9 8 7 38 38 H 1.08001 * 119.93832 * 0.02562 * 11 10 9 39 39 H 1.08006 * 119.97237 * 179.77245 * 12 11 10 40 40 H 1.07993 * 120.03379 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.46748 * 299.99921 * 16 15 14 42 42 H 1.08999 * 109.47366 * 59.99267 * 16 15 14 43 43 H 1.09001 * 109.47354 * 299.99735 * 17 16 15 44 44 H 1.09001 * 109.47032 * 60.00145 * 17 16 15 45 45 H 0.97000 * 119.99198 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03152 * 0.02562 * 26 10 9 47 47 H 1.08994 * 113.47477 * 87.76280 * 27 8 7 48 48 H 1.09005 * 113.47338 * 218.22138 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2200 0.3500 1.0279 7 6 4.1205 2.7066 0.0001 8 7 5.1517 2.2506 -0.9507 9 6 5.3736 3.2489 -2.0052 10 6 6.5907 2.8689 -2.8086 11 6 7.8397 3.3250 -2.4284 12 6 8.9573 2.9828 -3.1665 13 6 8.8297 2.1795 -4.2834 14 6 7.5786 1.7169 -4.6641 15 8 7.4504 0.9270 -5.7626 16 6 8.6463 0.6120 -6.4784 17 6 8.3053 -0.2797 -7.6739 18 6 9.5665 -0.6114 -8.4292 19 1 10.5165 -0.2251 -8.0901 20 6 9.5080 -1.4089 -9.5524 21 7 8.3514 -1.8796 -9.9650 22 14 11.0714 -1.8206 -10.4881 23 1 11.6639 -3.0664 -9.9385 24 1 10.7513 -2.0167 -11.9249 25 1 12.0421 -0.7058 -10.3450 26 6 6.4584 2.0613 -3.9213 27 6 4.2026 1.2134 -1.3962 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0659 0.7528 2.0289 32 1 3.7715 -0.6413 0.9620 33 1 5.2887 0.2793 0.8254 34 1 4.5249 3.0152 0.9641 35 1 3.4329 3.4387 -0.4233 36 1 5.5288 4.2280 -1.5519 37 1 4.5030 3.2856 -2.6600 38 1 7.9415 3.9529 -1.5556 39 1 9.9311 3.3433 -2.8696 40 1 9.7030 1.9128 -4.8600 41 1 9.1111 1.5324 -6.8321 42 1 9.3369 0.0865 -5.8188 43 1 7.8407 -1.2000 -7.3199 44 1 7.6147 0.2455 -8.3337 45 1 8.3102 -2.4404 -10.7555 46 1 5.4833 1.7026 -4.2159 47 1 3.5369 1.5470 -2.1921 48 1 4.6765 0.2566 -1.6155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425369955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:39 Heat of formation + Delta-G solvation = -68.986077 kcal Electronic energy + Delta-G solvation = -27656.047350 eV Core-core repulsion = 23677.453978 eV Total energy + Delta-G solvation = -3978.593373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72151 -40.04631 -39.49308 -37.25949 -36.75313 -33.54713 -33.28322 -30.99761 -30.63153 -29.17380 -28.17307 -27.13396 -26.43167 -25.17811 -24.65537 -22.54663 -22.20447 -21.46842 -20.16386 -19.49158 -17.92428 -17.65094 -17.13252 -16.77855 -16.24939 -15.95909 -15.67456 -15.52277 -15.29959 -14.96267 -14.87729 -14.46398 -14.15179 -13.73015 -13.60570 -13.36222 -13.13901 -12.91128 -12.84683 -12.59157 -12.46692 -12.33126 -12.31646 -11.89933 -11.50120 -11.35774 -11.27807 -11.19594 -11.15922 -10.94139 -10.88178 -10.72636 -10.65320 -10.43913 -9.85673 -9.66354 -9.35492 -9.30423 -8.68977 -8.45571 -7.82664 -6.11121 -4.15719 1.43941 1.70676 1.74113 2.27525 3.26913 3.32849 3.35662 3.52216 3.71179 3.83701 4.00207 4.32528 4.40097 4.43448 4.54962 4.57427 4.72337 4.80017 4.89788 4.95967 5.08377 5.13512 5.19612 5.25336 5.26195 5.29749 5.38024 5.42560 5.47361 5.49869 5.54612 5.66392 5.70084 5.85219 5.94017 5.98515 6.03411 6.07187 6.18175 6.54080 6.56691 6.57447 6.73267 6.73803 6.99458 7.32452 7.50114 7.63283 7.80962 8.06327 8.23213 8.89848 9.48615 11.00478 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.002062 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.992550 B =13577.520310 C =14989.135209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.478 3.522 4 O -0.506 6.506 5 C -0.090 4.090 6 C -0.121 4.121 7 C 0.020 3.980 8 N -0.455 5.455 9 C 0.061 3.939 10 C -0.042 4.042 11 C -0.151 4.151 12 C -0.081 4.081 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.317 6.317 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.153 4.153 27 C 0.020 3.980 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.122 0.878 47 H 0.077 0.923 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 8.180 23.818 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.320 3.680 4 O -0.394 6.394 5 C -0.092 4.092 6 C -0.178 4.178 7 C -0.109 4.109 8 N -0.177 5.177 9 C -0.067 4.067 10 C -0.043 4.043 11 C -0.170 4.170 12 C -0.099 4.099 13 C -0.230 4.230 14 C 0.099 3.901 15 O -0.230 6.230 16 C -0.008 4.008 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.173 4.173 27 C -0.109 4.109 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.095 0.905 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.136 8.119 23.779 27.484 hybrid contribution 0.031 0.111 -1.020 1.027 sum -11.105 8.230 22.758 26.627 Atomic orbital electron populations 1.23315 0.76176 1.03948 1.02578 1.86528 1.23473 1.33146 1.83643 1.23463 0.91315 0.81403 0.71796 1.90665 1.66902 1.36479 1.45326 1.22034 0.86715 1.00030 1.00421 1.21522 1.01966 0.98062 0.96239 1.23939 0.93250 0.93889 0.99813 1.69032 1.29949 1.08149 1.10522 1.21628 0.95938 0.96073 0.93016 1.19210 0.94251 0.96757 0.94034 1.20727 0.91864 1.03617 1.00805 1.20877 0.98395 0.96437 0.94159 1.21387 0.97118 1.03762 1.00705 1.19136 0.93400 0.90218 0.87392 1.86167 1.37207 1.62985 1.36627 1.23322 0.84148 0.99206 0.94172 1.19122 0.97955 0.94211 0.89894 1.20972 0.93029 1.31607 1.10828 0.92362 1.24996 0.96423 0.95645 0.97168 1.69981 1.24173 1.33958 1.24664 0.86481 0.83011 0.78836 0.79022 1.20478 1.21050 1.19764 1.20226 0.97533 1.02714 0.96793 1.24009 0.93680 0.99915 0.93300 0.91784 0.87856 0.91878 0.91764 0.90923 0.89690 0.88374 0.89666 0.89494 0.92384 0.86481 0.86184 0.85291 0.93159 0.93130 0.95409 0.95432 0.92707 0.85954 0.90496 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.18 10.14 -39.26 -0.40 -3.57 16 3 C 0.48 4.73 7.11 36.01 0.26 4.98 16 4 O -0.51 -6.13 15.69 -18.75 -0.29 -6.43 16 5 C -0.09 -0.76 1.46 -155.13 -0.23 -0.99 16 6 C -0.12 -0.85 9.17 37.16 0.34 -0.51 16 7 C 0.02 0.16 6.62 -7.53 -0.05 0.11 16 8 N -0.45 -4.36 6.12 -246.03 -1.51 -5.86 16 9 C 0.06 0.61 4.94 -4.98 -0.02 0.58 16 10 C -0.04 -0.53 5.46 -104.65 -0.57 -1.10 16 11 C -0.15 -1.86 9.70 -39.56 -0.38 -2.24 16 12 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 13 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 14 C 0.15 2.54 6.69 -39.22 -0.26 2.28 16 15 O -0.32 -6.55 10.14 -19.44 -0.20 -6.75 16 16 C 0.07 1.41 4.68 37.15 0.17 1.59 16 17 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.15 -2.31 9.64 -39.43 -0.38 -2.69 16 27 C 0.02 0.18 6.82 -7.54 -0.05 0.13 16 28 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.49 7.81 -51.93 -0.41 0.09 16 33 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.10 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.09 0.74 7.23 -51.93 -0.38 0.37 16 36 H 0.09 0.74 8.02 -51.93 -0.42 0.32 16 37 H 0.06 0.56 7.24 -51.93 -0.38 0.18 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 41 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 42 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.08 0.72 7.38 -51.93 -0.38 0.33 16 48 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -32.15 400.58 -9.75 -41.91 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.68 Total: -1.26 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.43 Total: -14.57 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: -0.77 Total: -31.60 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.89 Total: -16.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.15 -9.75 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425369955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.079 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds