Wall clock time and date at job start Tue Mar 31 2020 18:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99408 * 2 1 4 4 O 1.20824 * 120.00484 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99599 * 180.02562 * 3 2 1 6 6 C 1.52998 * 113.25302 * 312.94864 * 5 3 2 7 7 C 1.53513 * 114.16712 * 180.02562 * 5 3 2 8 8 N 1.47490 * 87.92911 * 220.13714 * 7 5 3 9 9 C 1.46890 * 110.99881 * 138.70112 * 8 7 5 10 10 C 1.50698 * 109.47146 * 169.99777 * 9 8 7 11 11 C 1.38289 * 119.97869 * 270.23400 * 10 9 8 12 12 C 1.38237 * 120.11494 * 180.27323 * 11 10 9 13 13 C 1.38167 * 120.05858 * 359.74537 * 12 11 10 14 14 C 1.38709 * 119.93745 * 0.02562 * 13 12 11 15 15 O 1.35906 * 120.05198 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00229 * 0.02562 * 15 14 13 17 17 C 1.52994 * 109.47206 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47149 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99936 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00355 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00355 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47463 * 89.99963 * 22 20 18 24 24 H 1.48500 * 109.47332 * 210.00437 * 22 20 18 25 25 H 1.48503 * 109.46959 * 330.00314 * 22 20 18 26 26 C 1.38125 * 119.96886 * 89.99848 * 10 9 8 27 27 C 1.47486 * 87.83218 * 27.00948 * 8 7 5 28 28 H 1.09001 * 109.47369 * 60.00222 * 1 2 3 29 29 H 1.09003 * 109.46780 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47144 * 299.99632 * 1 2 3 31 31 H 1.08996 * 109.47971 * 287.04685 * 6 5 3 32 32 H 1.09002 * 109.47285 * 47.05649 * 6 5 3 33 33 H 1.09000 * 109.46791 * 167.05081 * 6 5 3 34 34 H 1.09001 * 113.47538 * 105.37518 * 7 5 3 35 35 H 1.09000 * 113.47607 * 334.89748 * 7 5 3 36 36 H 1.09004 * 109.47265 * 50.00160 * 9 8 7 37 37 H 1.08998 * 109.47715 * 290.00188 * 9 8 7 38 38 H 1.08001 * 119.93832 * 0.02562 * 11 10 9 39 39 H 1.08006 * 119.97237 * 179.77245 * 12 11 10 40 40 H 1.07993 * 120.03379 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.46748 * 299.99921 * 16 15 14 42 42 H 1.08999 * 109.47366 * 59.99267 * 16 15 14 43 43 H 1.09001 * 109.47354 * 299.99735 * 17 16 15 44 44 H 1.09001 * 109.47032 * 60.00145 * 17 16 15 45 45 H 0.97000 * 119.99198 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03152 * 0.02562 * 26 10 9 47 47 H 1.08994 * 113.47477 * 87.76280 * 27 8 7 48 48 H 1.09005 * 113.47338 * 218.22138 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2200 0.3500 1.0279 7 6 4.1205 2.7066 0.0001 8 7 5.1517 2.2506 -0.9507 9 6 5.3736 3.2489 -2.0052 10 6 6.5907 2.8689 -2.8086 11 6 7.8397 3.3250 -2.4284 12 6 8.9573 2.9828 -3.1665 13 6 8.8297 2.1795 -4.2834 14 6 7.5786 1.7169 -4.6641 15 8 7.4504 0.9270 -5.7626 16 6 8.6463 0.6120 -6.4784 17 6 8.3053 -0.2797 -7.6739 18 6 9.5665 -0.6114 -8.4292 19 1 10.5165 -0.2251 -8.0901 20 6 9.5080 -1.4089 -9.5524 21 7 8.3514 -1.8796 -9.9650 22 14 11.0714 -1.8206 -10.4881 23 1 11.6639 -3.0664 -9.9385 24 1 10.7513 -2.0167 -11.9249 25 1 12.0421 -0.7058 -10.3450 26 6 6.4584 2.0613 -3.9213 27 6 4.2026 1.2134 -1.3962 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0659 0.7528 2.0289 32 1 3.7715 -0.6413 0.9620 33 1 5.2887 0.2793 0.8254 34 1 4.5249 3.0152 0.9641 35 1 3.4329 3.4387 -0.4233 36 1 5.5288 4.2280 -1.5519 37 1 4.5030 3.2856 -2.6600 38 1 7.9415 3.9529 -1.5556 39 1 9.9311 3.3433 -2.8696 40 1 9.7030 1.9128 -4.8600 41 1 9.1111 1.5324 -6.8321 42 1 9.3369 0.0865 -5.8188 43 1 7.8407 -1.2000 -7.3199 44 1 7.6147 0.2455 -8.3337 45 1 8.3102 -2.4404 -10.7555 46 1 5.4833 1.7026 -4.2159 47 1 3.5369 1.5470 -2.1921 48 1 4.6765 0.2566 -1.6155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425369955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:38 Heat of formation + Delta-G solvation = -88.419106 kcal Electronic energy + Delta-G solvation = -27656.890030 eV Core-core repulsion = 23677.453978 eV Total energy + Delta-G solvation = -3979.436052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.45451 -41.10151 -40.47194 -38.54187 -37.53291 -35.49402 -34.27883 -32.58480 -31.73609 -30.58472 -28.75655 -27.94733 -27.17547 -26.92132 -25.57498 -23.76150 -23.33318 -22.79850 -21.49232 -20.18985 -19.18547 -18.53064 -18.23177 -17.84362 -17.49071 -17.03995 -16.93738 -16.85920 -16.49914 -16.40903 -15.71502 -15.61913 -15.10984 -14.52632 -14.38154 -14.33892 -14.30485 -14.24153 -14.02643 -13.90530 -13.57849 -13.19891 -13.07538 -13.00036 -12.91480 -12.66016 -12.61072 -12.53899 -12.22764 -12.08394 -11.86323 -11.77597 -11.62414 -11.58126 -11.56353 -11.42214 -11.36262 -10.62868 -10.12979 -9.75153 -9.07956 -8.27497 -6.41252 0.34909 0.55946 0.97847 1.40562 1.42906 1.54030 1.62684 2.26783 2.50702 2.70352 2.98669 3.06907 3.07905 3.64775 3.71470 3.78552 3.84320 3.92201 4.05826 4.20447 4.24988 4.26116 4.26575 4.28982 4.29690 4.44378 4.47576 4.57202 4.61672 4.65250 4.67482 4.72871 4.75073 4.80867 4.88574 4.94074 5.09658 5.13772 5.24964 5.30946 5.34620 5.45285 5.45602 5.54510 5.63737 5.68460 5.83017 5.93290 6.07184 6.57734 6.58953 6.73511 7.28916 8.85705 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.002062 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.992550 B =13577.520310 C =14989.135209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.479 3.521 4 O -0.532 6.532 5 C -0.086 4.086 6 C -0.116 4.116 7 C 0.025 3.975 8 N -0.459 5.459 9 C 0.063 3.937 10 C -0.037 4.037 11 C -0.141 4.141 12 C -0.078 4.078 13 C -0.223 4.223 14 C 0.106 3.894 15 O -0.343 6.343 16 C 0.086 3.914 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.977 3.023 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.163 4.163 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.059 0.941 43 H -0.002 1.002 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.119 0.881 47 H 0.072 0.928 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 9.303 25.890 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.322 3.678 4 O -0.422 6.422 5 C -0.088 4.088 6 C -0.173 4.173 7 C -0.103 4.103 8 N -0.180 5.180 9 C -0.065 4.065 10 C -0.037 4.037 11 C -0.159 4.159 12 C -0.096 4.096 13 C -0.242 4.242 14 C 0.061 3.939 15 O -0.258 6.258 16 C 0.011 3.989 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.800 3.200 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.182 4.182 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.137 0.863 47 H 0.090 0.910 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.731 9.247 25.879 29.153 hybrid contribution -0.537 -0.198 -1.543 1.646 sum -10.269 9.048 24.336 27.921 Atomic orbital electron populations 1.23573 0.74789 1.05766 1.02558 1.86522 1.24940 1.32732 1.83239 1.23720 0.91819 0.81236 0.70981 1.90650 1.67580 1.37270 1.46697 1.22075 0.85926 1.00678 1.00112 1.21512 1.01535 0.97864 0.96407 1.23944 0.92668 0.93574 1.00093 1.69001 1.30414 1.08093 1.10541 1.21665 0.94703 0.97100 0.93036 1.19514 0.95827 0.95342 0.93065 1.21161 0.91094 1.02578 1.01069 1.21239 1.00254 0.95185 0.92885 1.21496 0.96159 1.04629 1.01908 1.19472 0.95231 0.91758 0.87424 1.86076 1.36588 1.64728 1.38378 1.22839 0.84600 0.98609 0.92816 1.18963 0.96997 0.93548 0.91371 1.21396 0.93809 1.31818 1.11322 0.91104 1.26059 1.00219 0.95288 0.98227 1.70127 1.26855 1.34713 1.25353 0.85273 0.78398 0.79080 0.77246 1.19484 1.20653 1.18305 1.20378 0.96811 1.03428 0.97570 1.24011 0.93761 0.99702 0.93881 0.92225 0.85200 0.91512 0.90447 0.90832 0.89912 0.86661 0.90070 0.87241 0.92380 0.83192 0.83133 0.85628 0.92286 0.92268 0.98369 0.98411 0.92433 0.86343 0.90971 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.22 10.14 -51.44 -0.52 -6.74 16 3 C 0.48 9.15 7.11 71.24 0.51 9.66 16 4 O -0.53 -12.66 15.69 21.97 0.34 -12.31 16 5 C -0.09 -1.35 1.46 -52.58 -0.08 -1.43 16 6 C -0.12 -1.44 9.17 71.98 0.66 -0.78 16 7 C 0.03 0.37 6.62 83.58 0.55 0.92 16 8 N -0.46 -7.94 6.12 -932.31 -5.71 -13.64 16 9 C 0.06 1.11 4.94 85.56 0.42 1.54 16 10 C -0.04 -0.87 5.46 -19.88 -0.11 -0.98 16 11 C -0.14 -2.99 9.70 22.28 0.22 -2.77 16 12 C -0.08 -1.84 10.04 22.25 0.22 -1.61 16 13 C -0.22 -6.88 9.04 22.37 0.20 -6.68 16 14 C 0.11 3.80 6.69 22.51 0.15 3.95 16 15 O -0.34 -14.93 10.14 -92.49 -0.94 -15.87 16 16 C 0.09 3.83 4.68 71.98 0.34 4.17 16 17 C 0.03 1.58 5.34 29.85 0.16 1.74 16 18 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 19 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 22 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 26 C -0.16 -4.94 9.64 22.37 0.22 -4.72 16 27 C 0.02 0.28 6.82 83.57 0.57 0.85 16 28 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.90 7.81 -2.39 -0.02 0.88 16 33 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16 34 H 0.12 1.30 8.12 -2.39 -0.02 1.28 16 35 H 0.08 1.28 7.23 -2.39 -0.02 1.26 16 36 H 0.11 1.48 8.02 -2.38 -0.02 1.46 16 37 H 0.06 1.05 7.24 -2.39 -0.02 1.03 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.13 3.86 6.30 -2.91 -0.02 3.84 16 41 H 0.06 2.48 7.66 -2.39 -0.02 2.47 16 42 H 0.06 2.49 7.66 -2.39 -0.02 2.48 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 47 H 0.07 1.36 7.38 -2.39 -0.02 1.34 16 48 H 0.10 1.88 8.12 -2.38 -0.02 1.86 16 Total: -1.00 -71.43 400.58 2.35 -69.08 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.94 Total: 15.51 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 5.92 Total: -24.97 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -5.42 Total: -70.37 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.11 Total: -34.92 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.43 2.35 -69.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425369955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.337 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds