Wall clock time and date at job start Tue Mar 31 2020 19:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47357 * 2 1 4 4 C 1.52990 * 109.47325 * 174.99707 * 3 2 1 5 5 C 1.53004 * 109.47353 * 184.99776 * 4 3 2 6 6 O 1.42904 * 109.46856 * 294.99689 * 3 2 1 7 7 C 1.35717 * 116.99830 * 93.74103 * 6 3 2 8 8 C 1.38995 * 119.91489 * 4.12876 * 7 6 3 9 9 C 1.37697 * 120.08921 * 180.02562 * 8 7 6 10 10 C 1.39737 * 119.91126 * 359.97438 * 9 8 7 11 11 C 1.47606 * 120.08716 * 179.97438 * 10 9 8 12 12 O 1.21576 * 120.00028 * 352.05410 * 11 10 9 13 13 N 1.34774 * 119.99658 * 172.05113 * 11 10 9 14 14 C 1.47580 * 134.48944 * 180.60025 * 13 11 10 15 15 C 1.53946 * 86.11580 * 155.36462 * 14 13 11 16 16 O 1.42900 * 113.74209 * 269.15752 * 15 14 13 17 17 C 1.50701 * 113.74052 * 137.95433 * 15 14 13 18 18 H 1.08000 * 120.00401 * 6.38883 * 17 15 14 19 19 C 1.37875 * 119.99879 * 186.39041 * 17 15 14 20 20 N 1.31517 * 120.00235 * 184.70848 * 19 17 15 21 21 Si 1.86802 * 120.00032 * 4.70314 * 19 17 15 22 22 H 1.48504 * 109.47432 * 269.99964 * 21 19 17 23 23 H 1.48493 * 109.47201 * 30.00524 * 21 19 17 24 24 H 1.48503 * 109.47001 * 150.00169 * 21 19 17 25 25 C 1.47818 * 134.46106 * 0.48005 * 13 11 10 26 26 C 1.39735 * 119.82462 * 0.27043 * 10 9 8 27 27 C 1.37705 * 119.90770 * 359.45295 * 26 10 9 28 28 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47254 * 300.00966 * 1 2 3 30 30 H 1.09005 * 109.46499 * 60.00203 * 1 2 3 31 31 H 1.08993 * 109.47331 * 239.99465 * 2 1 3 32 32 H 1.09001 * 109.46528 * 119.99278 * 2 1 3 33 33 H 1.09003 * 109.46839 * 54.99425 * 3 2 1 34 34 H 1.09003 * 109.47125 * 304.99648 * 4 3 2 35 35 H 1.08994 * 109.47452 * 64.99543 * 4 3 2 36 36 H 1.09006 * 109.46728 * 59.99882 * 5 4 3 37 37 H 1.09001 * 109.47231 * 179.97438 * 5 4 3 38 38 H 1.08994 * 109.47158 * 299.99913 * 5 4 3 39 39 H 1.08002 * 119.95480 * 359.97438 * 8 7 6 40 40 H 1.08003 * 120.04850 * 179.97438 * 9 8 7 41 41 H 1.09004 * 113.76678 * 41.06702 * 14 13 11 42 42 H 1.08999 * 113.77402 * 269.66916 * 14 13 11 43 43 H 0.96706 * 113.99801 * 172.97178 * 16 15 14 44 44 H 0.96997 * 119.99773 * 354.98209 * 20 19 17 45 45 H 1.09000 * 113.76617 * 90.36826 * 25 13 11 46 46 H 1.09000 * 113.83246 * 318.91277 * 25 13 11 47 47 H 1.07995 * 120.04481 * 179.72521 * 26 10 9 48 48 H 1.07997 * 119.95734 * 180.25285 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4443 0.1258 5 6 4.0646 2.8850 0.2511 6 8 1.6621 2.0813 -1.2211 7 6 0.5033 2.7878 -1.2139 8 6 -0.2110 2.9356 -0.0307 9 6 -1.3874 3.6511 -0.0193 10 6 -1.8626 4.2296 -1.1993 11 6 -3.1235 4.9970 -1.1916 12 8 -3.8232 5.0066 -0.1975 13 7 -3.4989 5.6870 -2.2868 14 6 -4.6507 6.5462 -2.6233 15 6 -3.7244 7.2011 -3.6640 16 8 -3.0038 8.3291 -3.1637 17 6 -4.3934 7.4710 -4.9871 18 1 -5.4543 7.3031 -5.1000 19 6 -3.6511 7.9323 -6.0535 20 7 -4.2485 8.2559 -7.1796 21 14 -1.7969 8.0977 -5.8988 22 1 -1.4610 9.4548 -5.3981 23 1 -1.2867 7.0785 -4.9470 24 1 -1.1689 7.8913 -7.2286 25 6 -2.9208 5.8885 -3.6322 26 6 -1.1442 4.0744 -2.3877 27 6 0.0344 3.3621 -2.3896 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6054 1.9815 0.8418 34 1 3.8570 0.8801 1.0115 35 1 4.0030 0.9835 -0.7594 36 1 3.6263 3.3458 1.1365 37 1 5.1508 2.8862 0.3412 38 1 3.7724 3.4492 -0.6345 39 1 0.1567 2.4878 0.8808 40 1 -1.9421 3.7652 0.9003 41 1 -4.9491 7.2165 -1.8172 42 1 -5.4896 6.0049 -3.0607 43 1 -2.3430 8.6776 -3.7778 44 1 -5.2003 8.1019 -7.2853 45 1 -3.2505 5.1535 -4.3665 46 1 -1.8406 6.0345 -3.6301 47 1 -1.5104 4.5162 -3.3026 48 1 0.5924 3.2451 -3.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450760189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:50 Heat of formation + Delta-G solvation = -50.990356 kcal Electronic energy + Delta-G solvation = -29169.436432 eV Core-core repulsion = 25191.623412 eV Total energy + Delta-G solvation = -3977.813020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.79779 -39.88290 -38.13792 -37.04006 -34.74243 -34.43025 -32.64623 -32.59160 -31.15999 -30.48185 -28.49620 -26.82389 -25.92172 -25.08178 -23.48895 -22.74569 -22.40326 -20.89155 -20.02215 -19.19907 -18.51043 -18.03285 -16.93810 -16.26860 -16.23600 -15.92319 -15.37966 -15.07654 -14.85243 -14.47102 -14.26337 -14.14278 -13.86969 -13.51537 -13.44159 -13.40389 -13.16375 -13.03356 -12.82753 -12.61732 -12.44426 -12.22122 -12.07550 -11.89749 -11.86629 -11.55344 -11.46467 -11.28688 -11.20119 -10.81017 -10.68217 -10.51927 -10.39674 -9.98747 -9.52716 -9.45069 -9.09964 -9.01554 -8.54851 -8.30280 -7.98597 -6.73580 -4.50251 0.99535 1.30774 2.92875 3.07268 3.09668 3.11965 3.28863 3.36023 3.98677 4.14951 4.17926 4.45442 4.48529 4.66996 4.71825 4.78370 4.84432 4.84821 4.95349 5.05539 5.06849 5.14014 5.26806 5.33991 5.39589 5.41195 5.50198 5.55817 5.59319 5.61302 5.68323 5.73480 5.91793 5.94015 5.94672 5.96491 6.00292 6.13817 6.17310 6.21723 6.29836 6.35887 6.52177 6.59214 6.65761 7.25677 7.46675 8.04717 8.24344 8.46638 8.56504 8.61442 9.25569 10.62307 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.003046 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.494006 B = 9189.445986 C =10107.186100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.143 4.143 3 C 0.075 3.925 4 C -0.121 4.121 5 C -0.155 4.155 6 O -0.303 6.303 7 C 0.154 3.846 8 C -0.223 4.223 9 C -0.023 4.023 10 C -0.161 4.161 11 C 0.575 3.425 12 O -0.561 6.561 13 N -0.628 5.628 14 C 0.129 3.871 15 C 0.198 3.802 16 O -0.555 6.555 17 C -0.610 4.610 18 H 0.072 0.928 19 C 0.035 3.965 20 N -0.891 5.891 21 Si 1.029 2.971 22 H -0.275 1.275 23 H -0.266 1.266 24 H -0.279 1.279 25 C 0.050 3.950 26 C -0.059 4.059 27 C -0.164 4.164 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.355 0.645 44 H 0.274 0.726 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.150 0.850 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.213 -14.945 11.980 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.181 4.181 3 C 0.019 3.981 4 C -0.158 4.158 5 C -0.213 4.213 6 O -0.216 6.216 7 C 0.108 3.892 8 C -0.242 4.242 9 C -0.042 4.042 10 C -0.164 4.164 11 C 0.366 3.634 12 O -0.443 6.443 13 N -0.361 5.361 14 C 0.007 3.993 15 C 0.157 3.843 16 O -0.364 6.364 17 C -0.648 4.648 18 H 0.090 0.910 19 C -0.173 4.173 20 N -0.524 5.524 21 Si 0.857 3.143 22 H -0.202 1.202 23 H -0.192 1.192 24 H -0.205 1.205 25 C -0.073 4.073 26 C -0.078 4.078 27 C -0.182 4.182 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.205 0.795 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.167 0.833 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.995 -14.668 12.204 24.898 hybrid contribution -1.124 -0.553 0.422 1.322 sum 14.871 -15.221 12.626 24.743 Atomic orbital electron populations 1.21957 0.95059 1.02164 1.02587 1.22045 0.96984 0.95888 1.03156 1.22714 0.95794 0.93035 0.86523 1.21665 0.92736 0.98502 1.02933 1.21772 1.00978 0.96093 1.02437 1.86087 1.36559 1.62821 1.36125 1.19200 0.85410 0.90621 0.93989 1.21207 0.98354 1.06843 0.97754 1.21004 0.93613 0.91846 0.97693 1.19885 0.97478 1.04322 0.94745 1.17794 0.85181 0.78142 0.82261 1.90708 1.55814 1.64592 1.33140 1.50050 1.26003 1.47633 1.12420 1.23254 0.90009 0.89700 0.96321 1.20518 0.88644 0.82081 0.93085 1.86457 1.55141 1.48325 1.46449 1.22269 0.97396 1.50927 0.94202 0.90983 1.25812 1.06482 0.92273 0.92726 1.70763 1.13576 1.41167 1.26856 0.84349 0.75125 0.77643 0.77177 1.20203 1.19219 1.20455 1.25003 0.99715 1.00945 0.81622 1.21949 0.92736 0.94248 0.98824 1.20390 0.98126 1.02878 0.96849 0.92402 0.92365 0.92011 0.90808 0.90501 0.90165 0.90150 0.90745 0.92772 0.92380 0.91866 0.84744 0.84684 0.90641 0.89022 0.79457 0.91544 0.88544 0.90020 0.83260 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.47 37.16 0.31 -1.03 16 2 C -0.14 -1.02 5.64 -26.73 -0.15 -1.17 16 3 C 0.08 0.61 2.16 -26.74 -0.06 0.55 16 4 C -0.12 -0.80 5.64 -26.73 -0.15 -0.95 16 5 C -0.16 -1.12 9.81 37.16 0.36 -0.76 16 6 O -0.30 -3.30 9.20 -18.86 -0.17 -3.47 16 7 C 0.15 1.89 5.27 -39.02 -0.21 1.68 16 8 C -0.22 -2.66 7.17 -39.50 -0.28 -2.94 16 9 C -0.02 -0.33 9.58 -39.22 -0.38 -0.70 16 10 C -0.16 -2.71 5.88 -104.96 -0.62 -3.32 16 11 C 0.58 11.65 7.98 -12.44 -0.10 11.55 16 12 O -0.56 -12.75 17.10 5.30 0.09 -12.66 16 13 N -0.63 -12.79 3.61 -179.32 -0.65 -13.44 16 14 C 0.13 2.73 8.23 -2.97 -0.02 2.70 16 15 C 0.20 4.45 1.06 -90.85 -0.10 4.35 16 16 O -0.55 -12.78 13.43 -35.23 -0.47 -13.25 16 17 C -0.61 -15.51 9.04 -34.44 -0.31 -15.82 16 18 H 0.07 1.96 8.04 -52.49 -0.42 1.54 16 19 C 0.03 0.90 5.47 -17.82 -0.10 0.80 16 20 N -0.89 -25.02 13.70 55.43 0.76 -24.27 16 21 Si 1.03 21.55 24.84 -169.99 -4.22 17.33 16 22 H -0.28 -5.51 6.95 56.52 0.39 -5.12 16 23 H -0.27 -4.86 4.66 56.52 0.26 -4.60 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 C 0.05 0.97 4.42 -2.84 -0.01 0.96 16 26 C -0.06 -0.90 9.07 -39.22 -0.36 -1.25 16 27 C -0.16 -2.16 9.97 -39.49 -0.39 -2.55 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 6.89 -51.93 -0.36 0.11 16 30 H 0.06 0.64 6.28 -51.93 -0.33 0.32 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.63 5.31 -51.93 -0.28 0.35 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 39 H 0.14 1.27 4.65 -52.49 -0.24 1.03 16 40 H 0.14 1.91 7.67 -52.48 -0.40 1.51 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 43 H 0.36 7.54 4.51 45.56 0.21 7.75 16 44 H 0.27 7.67 8.72 -40.82 -0.36 7.32 16 45 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 46 H 0.08 1.49 4.73 -51.93 -0.25 1.25 16 47 H 0.15 2.26 3.92 -52.49 -0.21 2.05 16 48 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -30.58 373.33 -8.22 -38.79 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.62 Total: 13.26 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.55 Total: -7.92 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.11 Total: -37.71 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.56 Total: -29.39 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.22 Total: 17.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.58 -8.22 -38.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450760189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.198 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds