Wall clock time and date at job start Tue Mar 31 2020 19:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47357 * 2 1 4 4 C 1.52990 * 109.47325 * 174.99707 * 3 2 1 5 5 C 1.53004 * 109.47353 * 184.99776 * 4 3 2 6 6 O 1.42904 * 109.46856 * 294.99689 * 3 2 1 7 7 C 1.35717 * 116.99830 * 93.74103 * 6 3 2 8 8 C 1.38995 * 119.91489 * 4.12876 * 7 6 3 9 9 C 1.37697 * 120.08921 * 180.02562 * 8 7 6 10 10 C 1.39737 * 119.91126 * 359.97438 * 9 8 7 11 11 C 1.47606 * 120.08716 * 179.97438 * 10 9 8 12 12 O 1.21576 * 120.00028 * 352.05410 * 11 10 9 13 13 N 1.34774 * 119.99658 * 172.05113 * 11 10 9 14 14 C 1.47580 * 134.48944 * 180.60025 * 13 11 10 15 15 C 1.53946 * 86.11580 * 155.36462 * 14 13 11 16 16 O 1.42900 * 113.74209 * 269.15752 * 15 14 13 17 17 C 1.50701 * 113.74052 * 137.95433 * 15 14 13 18 18 H 1.08000 * 120.00401 * 6.38883 * 17 15 14 19 19 C 1.37875 * 119.99879 * 186.39041 * 17 15 14 20 20 N 1.31517 * 120.00235 * 184.70848 * 19 17 15 21 21 Si 1.86802 * 120.00032 * 4.70314 * 19 17 15 22 22 H 1.48504 * 109.47432 * 269.99964 * 21 19 17 23 23 H 1.48493 * 109.47201 * 30.00524 * 21 19 17 24 24 H 1.48503 * 109.47001 * 150.00169 * 21 19 17 25 25 C 1.47818 * 134.46106 * 0.48005 * 13 11 10 26 26 C 1.39735 * 119.82462 * 0.27043 * 10 9 8 27 27 C 1.37705 * 119.90770 * 359.45295 * 26 10 9 28 28 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47254 * 300.00966 * 1 2 3 30 30 H 1.09005 * 109.46499 * 60.00203 * 1 2 3 31 31 H 1.08993 * 109.47331 * 239.99465 * 2 1 3 32 32 H 1.09001 * 109.46528 * 119.99278 * 2 1 3 33 33 H 1.09003 * 109.46839 * 54.99425 * 3 2 1 34 34 H 1.09003 * 109.47125 * 304.99648 * 4 3 2 35 35 H 1.08994 * 109.47452 * 64.99543 * 4 3 2 36 36 H 1.09006 * 109.46728 * 59.99882 * 5 4 3 37 37 H 1.09001 * 109.47231 * 179.97438 * 5 4 3 38 38 H 1.08994 * 109.47158 * 299.99913 * 5 4 3 39 39 H 1.08002 * 119.95480 * 359.97438 * 8 7 6 40 40 H 1.08003 * 120.04850 * 179.97438 * 9 8 7 41 41 H 1.09004 * 113.76678 * 41.06702 * 14 13 11 42 42 H 1.08999 * 113.77402 * 269.66916 * 14 13 11 43 43 H 0.96706 * 113.99801 * 172.97178 * 16 15 14 44 44 H 0.96997 * 119.99773 * 354.98209 * 20 19 17 45 45 H 1.09000 * 113.76617 * 90.36826 * 25 13 11 46 46 H 1.09000 * 113.83246 * 318.91277 * 25 13 11 47 47 H 1.07995 * 120.04481 * 179.72521 * 26 10 9 48 48 H 1.07997 * 119.95734 * 180.25285 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4443 0.1258 5 6 4.0646 2.8850 0.2511 6 8 1.6621 2.0813 -1.2211 7 6 0.5033 2.7878 -1.2139 8 6 -0.2110 2.9356 -0.0307 9 6 -1.3874 3.6511 -0.0193 10 6 -1.8626 4.2296 -1.1993 11 6 -3.1235 4.9970 -1.1916 12 8 -3.8232 5.0066 -0.1975 13 7 -3.4989 5.6870 -2.2868 14 6 -4.6507 6.5462 -2.6233 15 6 -3.7244 7.2011 -3.6640 16 8 -3.0038 8.3291 -3.1637 17 6 -4.3934 7.4710 -4.9871 18 1 -5.4543 7.3031 -5.1000 19 6 -3.6511 7.9323 -6.0535 20 7 -4.2485 8.2559 -7.1796 21 14 -1.7969 8.0977 -5.8988 22 1 -1.4610 9.4548 -5.3981 23 1 -1.2867 7.0785 -4.9470 24 1 -1.1689 7.8913 -7.2286 25 6 -2.9208 5.8885 -3.6322 26 6 -1.1442 4.0744 -2.3877 27 6 0.0344 3.3621 -2.3896 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6054 1.9815 0.8418 34 1 3.8570 0.8801 1.0115 35 1 4.0030 0.9835 -0.7594 36 1 3.6263 3.3458 1.1365 37 1 5.1508 2.8862 0.3412 38 1 3.7724 3.4492 -0.6345 39 1 0.1567 2.4878 0.8808 40 1 -1.9421 3.7652 0.9003 41 1 -4.9491 7.2165 -1.8172 42 1 -5.4896 6.0049 -3.0607 43 1 -2.3430 8.6776 -3.7778 44 1 -5.2003 8.1019 -7.2853 45 1 -3.2505 5.1535 -4.3665 46 1 -1.8406 6.0345 -3.6301 47 1 -1.5104 4.5162 -3.3026 48 1 0.5924 3.2451 -3.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450760189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:49 Heat of formation + Delta-G solvation = -71.488865 kcal Electronic energy + Delta-G solvation = -29170.325314 eV Core-core repulsion = 25191.623412 eV Total energy + Delta-G solvation = -3978.701902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.89602 -41.25389 -39.53629 -38.31432 -36.20012 -35.44708 -34.65035 -33.19081 -32.22716 -31.68609 -30.05415 -27.60888 -27.44620 -26.84155 -24.47369 -23.94572 -22.93974 -21.99401 -21.38225 -20.62650 -19.97090 -19.46766 -18.33082 -17.87039 -17.29256 -16.96696 -16.81240 -16.50286 -15.88778 -15.78391 -15.34394 -15.08531 -14.92835 -14.77883 -14.69398 -14.47765 -14.31672 -14.20055 -14.12166 -13.87108 -13.72715 -13.47917 -13.23240 -13.02900 -12.92514 -12.51953 -12.50581 -12.25204 -12.09957 -12.07958 -11.81195 -11.68099 -11.37745 -11.32535 -11.24082 -11.12454 -10.93562 -10.36454 -10.13375 -9.78899 -9.20723 -8.81310 -6.59965 -0.15592 0.27140 1.40147 1.47122 1.63251 1.75615 1.80607 2.14017 2.41284 2.77285 2.85089 3.21973 3.51112 3.58430 3.67393 3.75213 3.77229 3.91387 4.01710 4.14557 4.24292 4.29972 4.32567 4.36689 4.41662 4.49390 4.52051 4.54856 4.56233 4.62534 4.71466 4.86241 4.88314 4.89620 4.94526 5.03798 5.08144 5.10580 5.14577 5.19016 5.23949 5.34177 5.36823 5.42573 5.55394 5.59795 5.90915 6.38328 6.38717 6.65837 6.77187 7.03676 7.25919 8.53613 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.003046 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.494006 B = 9189.445986 C =10107.186100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.157 4.157 6 O -0.307 6.307 7 C 0.167 3.833 8 C -0.212 4.212 9 C -0.025 4.025 10 C -0.189 4.189 11 C 0.571 3.429 12 O -0.596 6.596 13 N -0.630 5.630 14 C 0.123 3.877 15 C 0.189 3.811 16 O -0.563 6.563 17 C -0.613 4.613 18 H 0.038 0.962 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 1.060 2.940 22 H -0.258 1.258 23 H -0.224 1.224 24 H -0.281 1.281 25 C 0.065 3.935 26 C -0.061 4.061 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.162 0.838 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.364 0.636 44 H 0.258 0.742 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.148 0.852 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.924 -16.903 13.532 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C 0.011 3.989 4 C -0.154 4.154 5 C -0.215 4.215 6 O -0.220 6.220 7 C 0.120 3.880 8 C -0.230 4.230 9 C -0.044 4.044 10 C -0.193 4.193 11 C 0.364 3.636 12 O -0.480 6.480 13 N -0.363 5.363 14 C 0.001 3.999 15 C 0.148 3.852 16 O -0.373 6.373 17 C -0.651 4.651 18 H 0.056 0.944 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.881 3.119 22 H -0.184 1.184 23 H -0.147 1.147 24 H -0.207 1.207 25 C -0.056 4.056 26 C -0.079 4.079 27 C -0.186 4.186 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.179 0.821 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.215 0.785 44 H 0.068 0.932 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.165 0.835 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 19.705 -16.643 13.769 29.238 hybrid contribution -2.282 -0.028 0.008 2.282 sum 17.423 -16.670 13.777 27.772 Atomic orbital electron populations 1.21969 0.96102 1.02360 1.01568 1.22041 0.95918 0.95346 1.04284 1.23039 0.96972 0.93384 0.85470 1.21697 0.91363 0.98326 1.04061 1.21786 1.01782 0.96338 1.01551 1.86110 1.35553 1.62374 1.37934 1.19277 0.85501 0.89532 0.93718 1.21396 0.97088 1.05668 0.98852 1.21054 0.94434 0.92013 0.96914 1.19709 0.96805 1.06226 0.96521 1.18393 0.86029 0.77767 0.81366 1.90674 1.57168 1.65931 1.34190 1.50017 1.25582 1.47740 1.12929 1.23230 0.90639 0.90104 0.95918 1.20501 0.89834 0.83151 0.91711 1.86438 1.55436 1.48742 1.46703 1.22357 0.96098 1.50602 0.96021 0.94407 1.27288 1.10815 0.91193 0.91842 1.70907 1.12756 1.43784 1.28446 0.84037 0.69846 0.79839 0.78228 1.18405 1.14716 1.20738 1.24865 1.00451 0.98857 0.81474 1.21865 0.93274 0.94772 0.97968 1.20571 0.97567 1.02370 0.98057 0.91759 0.92021 0.94277 0.91007 0.88056 0.89574 0.87725 0.90812 0.92613 0.91351 0.93767 0.82072 0.84935 0.91414 0.88506 0.78498 0.93234 0.87451 0.87918 0.83476 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.47 71.98 0.61 -1.67 16 2 C -0.14 -1.48 5.64 30.60 0.17 -1.30 16 3 C 0.07 0.83 2.16 30.59 0.07 0.90 16 4 C -0.12 -1.11 5.64 30.59 0.17 -0.94 16 5 C -0.16 -1.81 9.81 71.98 0.71 -1.10 16 6 O -0.31 -5.72 9.20 -90.39 -0.83 -6.55 16 7 C 0.17 3.61 5.27 22.63 0.12 3.73 16 8 C -0.21 -4.48 7.17 22.32 0.16 -4.32 16 9 C -0.03 -0.69 9.58 22.50 0.22 -0.47 16 10 C -0.19 -6.15 5.88 -20.08 -0.12 -6.27 16 11 C 0.57 23.03 7.98 86.72 0.69 23.72 16 12 O -0.60 -27.42 17.10 -3.95 -0.07 -27.48 16 13 N -0.63 -25.40 3.61 -843.35 -3.04 -28.44 16 14 C 0.12 5.30 8.23 86.49 0.71 6.01 16 15 C 0.19 8.43 1.06 -10.88 -0.01 8.42 16 16 O -0.56 -25.28 13.43 -148.98 -2.00 -27.28 16 17 C -0.61 -31.82 9.04 25.60 0.23 -31.59 16 18 H 0.04 2.16 8.04 -2.91 -0.02 2.14 16 19 C -0.01 -0.57 5.47 84.65 0.46 -0.11 16 20 N -0.92 -53.39 13.70 21.45 0.29 -53.10 16 21 Si 1.06 41.78 24.84 68.60 1.70 43.49 16 22 H -0.26 -9.51 6.95 99.48 0.69 -8.81 16 23 H -0.22 -7.17 4.66 99.48 0.46 -6.71 16 24 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 25 C 0.07 2.45 4.42 86.44 0.38 2.83 16 26 C -0.06 -1.70 9.07 22.51 0.20 -1.50 16 27 C -0.17 -3.94 9.97 22.33 0.22 -3.72 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.81 6.89 -2.39 -0.02 0.79 16 30 H 0.04 0.72 6.28 -2.38 -0.01 0.71 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.99 5.31 -2.39 -0.01 0.98 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.04 0.67 7.82 -2.39 -0.02 0.65 16 39 H 0.16 2.48 4.65 -2.91 -0.01 2.46 16 40 H 0.13 3.65 7.67 -2.91 -0.02 3.63 16 41 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 42 H 0.10 3.98 8.09 -2.39 -0.02 3.96 16 43 H 0.36 14.65 4.51 -74.05 -0.33 14.31 16 44 H 0.26 15.20 8.72 -92.71 -0.81 14.39 16 45 H 0.11 3.80 8.09 -2.39 -0.02 3.78 16 46 H 0.10 3.42 4.73 -2.39 -0.01 3.41 16 47 H 0.15 4.09 3.92 -2.91 -0.01 4.08 16 48 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -68.37 373.33 1.41 -66.96 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.36 Total: 39.79 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.00 Total: -7.39 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.75 Total: -81.54 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -2.90 Total: -61.31 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.70 Total: 43.49 kcal Total: -68.37 1.41 -66.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450760189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.526 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds