Wall clock time and date at job start Tue Mar 31 2020 19:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 117.00712 * 2 1 4 4 O 1.21474 * 119.99572 * 0.02562 * 3 2 1 5 5 C 1.47719 * 120.00363 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.15022 * 180.02562 * 5 3 2 7 7 C 1.37942 * 119.84542 * 180.02562 * 6 5 3 8 8 C 1.38363 * 120.15433 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.85054 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 90.00022 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47143 * 300.00028 * 14 13 12 16 16 C 1.52996 * 109.47131 * 59.99859 * 14 13 12 17 17 C 1.53005 * 109.47452 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47088 * 179.97438 * 17 14 13 19 19 H 1.08003 * 120.00531 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99882 * 180.02562 * 18 17 14 21 21 N 1.31519 * 119.99989 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00260 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47163 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47233 * 119.99620 * 22 20 18 25 25 H 1.48496 * 109.47397 * 239.99456 * 22 20 18 26 26 C 1.38366 * 120.30169 * 0.23733 * 8 7 6 27 27 C 1.37942 * 120.15251 * 359.48342 * 26 8 7 28 28 H 1.08990 * 109.47617 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46833 * 300.00180 * 1 2 3 30 30 H 1.09005 * 109.46606 * 59.99538 * 1 2 3 31 31 H 1.07997 * 120.07249 * 0.02562 * 6 5 3 32 32 H 1.08007 * 119.92568 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47152 * 330.00114 * 9 8 7 34 34 H 1.09001 * 109.46980 * 210.00215 * 9 8 7 35 35 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 37 37 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 38 38 H 1.09004 * 109.46930 * 59.99935 * 15 14 13 39 39 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.47067 * 300.00018 * 15 14 13 41 41 H 1.09001 * 109.46997 * 60.00426 * 16 14 13 42 42 H 1.09004 * 109.47552 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47452 * 300.00000 * 16 14 13 44 44 H 1.08998 * 109.47061 * 300.00668 * 17 14 13 45 45 H 1.09002 * 109.46668 * 60.00355 * 17 14 13 46 46 H 0.96996 * 119.99885 * 180.02562 * 21 20 18 47 47 H 1.08005 * 119.92711 * 179.72291 * 26 8 7 48 48 H 1.08002 * 120.08540 * 180.25756 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5389 1.2774 0.0006 6 6 4.1761 2.5198 0.0011 7 6 5.5540 2.5846 0.0011 8 6 6.3045 1.4222 0.0000 9 6 7.8095 1.5009 -0.0005 10 6 8.3117 1.5263 1.4201 11 8 7.5250 1.4840 2.3422 12 7 9.6351 1.5948 1.6658 13 6 10.1233 1.6189 3.0469 14 6 11.6512 1.6989 3.0463 15 6 12.2256 0.4789 2.3235 16 6 12.0948 2.9739 2.3263 17 6 12.1612 1.7247 4.4886 18 6 13.6661 1.8029 4.4880 19 1 14.2051 1.8310 3.5525 20 6 14.3551 1.8376 5.6818 21 7 13.6989 1.8029 6.8210 22 14 16.2205 1.9353 5.6811 23 1 16.7143 1.9622 4.2809 24 1 16.6517 3.1713 6.3823 25 1 16.7786 0.7497 6.3796 26 6 5.6795 0.1877 -0.0060 27 6 4.3024 0.1083 -0.0002 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5915 3.4279 0.0015 32 1 6.0483 3.5450 0.0019 33 1 8.1256 2.4090 -0.5139 34 1 8.2186 0.6315 -0.5152 35 1 10.2643 1.6282 0.9283 36 1 9.7145 2.4883 3.5617 37 1 9.8069 0.7107 3.5599 38 1 11.8623 0.4610 1.2959 39 1 13.3141 0.5361 2.3227 40 1 11.9096 -0.4295 2.8364 41 1 11.6857 3.8431 2.8413 42 1 13.1834 3.0308 2.3254 43 1 11.7316 2.9560 1.2987 44 1 11.7519 2.5940 5.0032 45 1 11.8452 0.8165 5.0019 46 1 14.1836 1.8277 7.6608 47 1 6.2712 -0.7158 -0.0113 48 1 3.8157 -0.8559 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451768750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:03 Heat of formation + Delta-G solvation = -118.073916 kcal Electronic energy + Delta-G solvation = -27420.996041 eV Core-core repulsion = 23440.274060 eV Total energy + Delta-G solvation = -3980.721981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88165 -39.99637 -38.83602 -37.12482 -36.71357 -33.65238 -33.29405 -32.09832 -31.32171 -29.26757 -27.73576 -27.07162 -26.55658 -25.94120 -23.62541 -22.99497 -22.66239 -21.06062 -20.21912 -18.44259 -18.28772 -17.42281 -16.87608 -16.66256 -16.42472 -15.98914 -15.79817 -15.08302 -14.92976 -14.81116 -14.50288 -13.92608 -13.87517 -13.70303 -13.67521 -13.58823 -13.09889 -12.81580 -12.57273 -12.54105 -12.43347 -12.09873 -11.97086 -11.93979 -11.32540 -11.18314 -11.16233 -11.05542 -10.86467 -10.84289 -10.68193 -10.44445 -10.27469 -9.91952 -9.91346 -9.27507 -9.25987 -9.06751 -8.93281 -8.78050 -8.38854 -6.02603 -4.04112 0.38244 1.11728 2.21879 2.34872 2.73569 3.27742 3.28171 3.36532 3.38574 3.64968 4.26389 4.42861 4.43766 4.52595 4.66880 4.74152 4.81886 4.91302 4.93439 5.04678 5.14140 5.22029 5.30572 5.32968 5.46037 5.53266 5.58441 5.70502 5.71165 5.85641 5.97813 6.10378 6.12052 6.17717 6.23026 6.24596 6.34741 6.51286 6.55421 6.58847 6.71483 7.02184 7.03468 7.08777 7.40984 7.60991 7.67759 7.72972 7.96004 8.34833 8.38884 9.00986 9.59289 11.08820 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.001728 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.981749 B =16196.942194 C =16414.786451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.509 6.509 5 C -0.134 4.134 6 C -0.051 4.051 7 C -0.117 4.117 8 C -0.021 4.021 9 C -0.112 4.112 10 C 0.508 3.492 11 O -0.536 6.536 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.119 4.119 27 C -0.059 4.059 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.259 0.741 47 H 0.131 0.869 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.202 -3.338 -19.197 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.135 4.135 6 C -0.069 4.069 7 C -0.135 4.135 8 C -0.022 4.022 9 C -0.152 4.152 10 C 0.293 3.707 11 O -0.413 6.413 12 N -0.373 5.373 13 C 0.006 3.994 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.550 4.550 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.137 4.137 27 C -0.077 4.077 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.149 0.851 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.971 -3.081 -18.323 27.278 hybrid contribution 1.170 0.123 -0.077 1.179 sum -18.802 -2.958 -18.400 26.473 Atomic orbital electron populations 1.23293 0.75891 1.03837 1.02687 1.86543 1.23633 1.32697 1.84331 1.21272 0.89220 0.81392 0.72471 1.90830 1.66855 1.36045 1.46054 1.19047 0.88700 0.95218 1.10578 1.21195 0.94472 0.96649 0.94602 1.20967 0.93152 0.98437 1.00969 1.19636 0.94286 0.93513 0.94750 1.20817 0.92617 1.05723 0.96032 1.20333 0.82735 0.77037 0.90602 1.90746 1.55287 1.49181 1.46104 1.46206 1.06515 1.74342 1.10248 1.21632 0.95195 1.01813 0.80811 1.20911 0.90708 0.95092 1.00634 1.21762 1.02186 0.97453 0.97011 1.21761 1.02493 0.97141 0.97025 1.19095 0.95956 0.97497 0.87647 1.21217 0.91508 1.50097 0.92148 0.92192 1.25024 0.98194 0.95548 0.95786 1.69976 1.35270 1.50820 0.97257 0.86586 0.86119 0.77565 0.78001 1.19802 1.21131 1.21140 1.21008 0.94300 0.97500 1.00924 1.21392 0.93716 0.97842 0.94736 0.87888 0.91734 0.91814 0.84509 0.84964 0.87567 0.87552 0.76624 0.91821 0.91813 0.95238 0.91422 0.93369 0.93368 0.91421 0.95240 0.96345 0.96353 0.93076 0.85072 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.30 16 2 O -0.36 -3.41 9.82 -40.51 -0.40 -3.81 16 3 C 0.51 5.85 7.90 34.60 0.27 6.13 16 4 O -0.51 -6.91 16.14 -19.25 -0.31 -7.22 16 5 C -0.13 -1.46 5.87 -104.98 -0.62 -2.08 16 6 C -0.05 -0.54 9.60 -39.17 -0.38 -0.91 16 7 C -0.12 -1.16 9.68 -39.64 -0.38 -1.55 16 8 C -0.02 -0.21 4.38 -104.53 -0.46 -0.67 16 9 C -0.11 -0.95 5.82 -29.03 -0.17 -1.12 16 10 C 0.51 6.67 7.82 -10.98 -0.09 6.58 16 11 O -0.54 -9.50 16.03 5.56 0.09 -9.41 16 12 N -0.72 -9.35 4.96 -60.30 -0.30 -9.65 16 13 C 0.13 2.16 4.56 -4.04 -0.02 2.14 16 14 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 15 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 16 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 17 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 18 C -0.51 -13.33 7.65 -34.44 -0.26 -13.60 16 19 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.12 -1.13 9.68 -39.64 -0.38 -1.52 16 27 C -0.06 -0.56 9.62 -39.17 -0.38 -0.94 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 1.34 7.65 -52.49 -0.40 0.94 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.11 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.11 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.40 4.15 6.16 -40.82 -0.25 3.90 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 39 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 43 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 48 H 0.14 1.07 7.61 -52.49 -0.40 0.67 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -33.68 398.29 -8.06 -41.74 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.37 Total: 0.94 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.49 Total: -9.08 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.44 Total: -35.06 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.62 Total: -20.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.68 -8.06 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451768750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.335 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds