Wall clock time and date at job start Tue Mar 31 2020 19:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 117.00712 * 2 1 4 4 O 1.21474 * 119.99572 * 0.02562 * 3 2 1 5 5 C 1.47719 * 120.00363 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.15022 * 180.02562 * 5 3 2 7 7 C 1.37942 * 119.84542 * 180.02562 * 6 5 3 8 8 C 1.38363 * 120.15433 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.85054 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 90.00022 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47143 * 300.00028 * 14 13 12 16 16 C 1.52996 * 109.47131 * 59.99859 * 14 13 12 17 17 C 1.53005 * 109.47452 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47088 * 179.97438 * 17 14 13 19 19 H 1.08003 * 120.00531 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99882 * 180.02562 * 18 17 14 21 21 N 1.31519 * 119.99989 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00260 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47163 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47233 * 119.99620 * 22 20 18 25 25 H 1.48496 * 109.47397 * 239.99456 * 22 20 18 26 26 C 1.38366 * 120.30169 * 0.23733 * 8 7 6 27 27 C 1.37942 * 120.15251 * 359.48342 * 26 8 7 28 28 H 1.08990 * 109.47617 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46833 * 300.00180 * 1 2 3 30 30 H 1.09005 * 109.46606 * 59.99538 * 1 2 3 31 31 H 1.07997 * 120.07249 * 0.02562 * 6 5 3 32 32 H 1.08007 * 119.92568 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47152 * 330.00114 * 9 8 7 34 34 H 1.09001 * 109.46980 * 210.00215 * 9 8 7 35 35 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 37 37 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 38 38 H 1.09004 * 109.46930 * 59.99935 * 15 14 13 39 39 H 1.09000 * 109.47312 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.47067 * 300.00018 * 15 14 13 41 41 H 1.09001 * 109.46997 * 60.00426 * 16 14 13 42 42 H 1.09004 * 109.47552 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47452 * 300.00000 * 16 14 13 44 44 H 1.08998 * 109.47061 * 300.00668 * 17 14 13 45 45 H 1.09002 * 109.46668 * 60.00355 * 17 14 13 46 46 H 0.96996 * 119.99885 * 180.02562 * 21 20 18 47 47 H 1.08005 * 119.92711 * 179.72291 * 26 8 7 48 48 H 1.08002 * 120.08540 * 180.25756 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5389 1.2774 0.0006 6 6 4.1761 2.5198 0.0011 7 6 5.5540 2.5846 0.0011 8 6 6.3045 1.4222 0.0000 9 6 7.8095 1.5009 -0.0005 10 6 8.3117 1.5263 1.4201 11 8 7.5250 1.4840 2.3422 12 7 9.6351 1.5948 1.6658 13 6 10.1233 1.6189 3.0469 14 6 11.6512 1.6989 3.0463 15 6 12.2256 0.4789 2.3235 16 6 12.0948 2.9739 2.3263 17 6 12.1612 1.7247 4.4886 18 6 13.6661 1.8029 4.4880 19 1 14.2051 1.8310 3.5525 20 6 14.3551 1.8376 5.6818 21 7 13.6989 1.8029 6.8210 22 14 16.2205 1.9353 5.6811 23 1 16.7143 1.9622 4.2809 24 1 16.6517 3.1713 6.3823 25 1 16.7786 0.7497 6.3796 26 6 5.6795 0.1877 -0.0060 27 6 4.3024 0.1083 -0.0002 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5915 3.4279 0.0015 32 1 6.0483 3.5450 0.0019 33 1 8.1256 2.4090 -0.5139 34 1 8.2186 0.6315 -0.5152 35 1 10.2643 1.6282 0.9283 36 1 9.7145 2.4883 3.5617 37 1 9.8069 0.7107 3.5599 38 1 11.8623 0.4610 1.2959 39 1 13.3141 0.5361 2.3227 40 1 11.9096 -0.4295 2.8364 41 1 11.6857 3.8431 2.8413 42 1 13.1834 3.0308 2.3254 43 1 11.7316 2.9560 1.2987 44 1 11.7519 2.5940 5.0032 45 1 11.8452 0.8165 5.0019 46 1 14.1836 1.8277 7.6608 47 1 6.2712 -0.7158 -0.0113 48 1 3.8157 -0.8559 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451768750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:01 Heat of formation + Delta-G solvation = -137.983799 kcal Electronic energy + Delta-G solvation = -27421.859399 eV Core-core repulsion = 23440.274060 eV Total energy + Delta-G solvation = -3981.585339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69079 -41.00647 -39.74214 -38.52366 -37.55054 -35.19932 -34.18489 -33.76893 -32.03934 -30.10708 -29.04439 -28.34601 -27.91694 -27.16720 -25.01208 -23.98986 -23.69695 -21.92197 -21.24511 -19.83216 -19.11925 -18.36359 -18.22668 -17.95022 -17.43722 -17.06049 -16.68912 -16.48965 -15.93549 -15.89167 -15.60379 -15.10700 -15.07356 -14.64545 -14.53921 -14.47485 -14.28166 -14.26289 -13.91541 -13.82015 -13.35919 -13.11071 -12.94279 -12.81112 -12.71108 -12.65142 -12.53487 -12.30997 -12.20587 -12.00666 -11.92774 -11.87296 -11.69435 -11.50386 -11.15387 -10.87659 -10.77406 -10.51545 -10.00430 -9.97634 -9.87287 -8.13394 -6.21191 -0.40425 0.39500 1.38980 1.42502 1.43750 1.55298 1.64339 1.73397 2.29489 2.45956 2.82255 3.21319 3.54277 3.73336 3.83773 3.97198 3.98283 4.11982 4.12786 4.26749 4.27074 4.29299 4.30169 4.37222 4.63065 4.64664 4.67921 4.73122 4.76925 4.81400 4.87116 5.00976 5.03040 5.11861 5.15440 5.16690 5.25635 5.34682 5.44950 5.51023 5.51185 5.53619 5.57874 5.61036 5.83533 5.84882 5.91744 6.31570 6.59139 6.67648 6.94985 7.36684 7.46882 8.99261 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.001728 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.981749 B =16196.942194 C =16414.786451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.540 6.540 5 C -0.152 4.152 6 C -0.065 4.065 7 C -0.124 4.124 8 C -0.032 4.032 9 C -0.100 4.100 10 C 0.507 3.493 11 O -0.588 6.588 12 N -0.708 5.708 13 C 0.143 3.857 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.122 4.122 17 C 0.038 3.962 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.959 3.041 23 H -0.255 1.255 24 H -0.286 1.286 25 H -0.285 1.285 26 C -0.124 4.124 27 C -0.060 4.060 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.416 0.584 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.075 0.925 44 H -0.017 1.017 45 H -0.016 1.016 46 H 0.259 0.741 47 H 0.152 0.848 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 -4.075 -22.490 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.083 4.083 7 C -0.142 4.142 8 C -0.033 4.033 9 C -0.139 4.139 10 C 0.295 3.705 11 O -0.468 6.468 12 N -0.362 5.362 13 C 0.018 3.982 14 C -0.066 4.066 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.000 4.000 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.204 4.204 21 N -0.581 5.581 22 Si 0.785 3.215 23 H -0.178 1.178 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.142 4.142 27 C -0.078 4.078 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.067 0.933 47 H 0.170 0.830 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.861 -3.833 -21.676 28.987 hybrid contribution 0.725 0.317 0.968 1.250 sum -18.136 -3.516 -20.708 27.750 Atomic orbital electron populations 1.23607 0.74208 1.06008 1.02631 1.86534 1.25330 1.31658 1.83788 1.21478 0.89587 0.81475 0.71700 1.90804 1.67535 1.37033 1.47765 1.19212 0.88604 0.95983 1.11556 1.21314 0.95103 0.96676 0.95193 1.21214 0.92914 0.99458 1.00596 1.19908 0.95327 0.93533 0.94488 1.20865 0.91335 1.09034 0.92632 1.21172 0.81907 0.75207 0.92181 1.90740 1.56449 1.51308 1.48281 1.45960 1.07209 1.74225 1.08760 1.21142 0.94121 0.99861 0.83069 1.20711 0.91519 0.97272 0.97080 1.21697 1.01214 0.95713 0.99240 1.21698 1.01576 0.95372 0.99245 1.18990 0.95457 0.94191 0.91312 1.21646 0.92514 1.48292 0.92512 0.90762 1.25973 1.03289 0.95582 0.95565 1.70135 1.37279 1.52711 0.97968 0.85480 0.80109 0.77181 0.78762 1.17849 1.21208 1.21169 1.21335 0.94385 0.98328 1.00165 1.21603 0.94039 0.98027 0.94129 0.84605 0.92121 0.91620 0.84764 0.83481 0.84305 0.83990 0.74551 0.94034 0.93887 0.90584 0.92759 0.94561 0.94658 0.92745 0.90611 0.99818 0.99755 0.93252 0.83009 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.66 9.82 -56.17 -0.55 -7.21 16 3 C 0.51 11.84 7.90 70.33 0.56 12.39 16 4 O -0.54 -15.13 16.14 19.92 0.32 -14.80 16 5 C -0.15 -3.28 5.87 -20.10 -0.12 -3.40 16 6 C -0.06 -1.36 9.60 22.54 0.22 -1.14 16 7 C -0.12 -2.28 9.68 22.23 0.22 -2.07 16 8 C -0.03 -0.55 4.38 -19.80 -0.09 -0.64 16 9 C -0.10 -1.25 5.82 29.10 0.17 -1.08 16 10 C 0.51 11.98 7.82 87.66 0.69 12.67 16 11 O -0.59 -20.39 16.03 -3.03 -0.05 -20.43 16 12 N -0.71 -16.28 4.96 -463.06 -2.30 -18.58 16 13 C 0.14 4.76 4.56 86.38 0.39 5.16 16 14 C -0.07 -2.33 0.54 -52.18 -0.03 -2.36 16 15 C -0.12 -3.75 8.05 71.98 0.58 -3.18 16 16 C -0.12 -3.79 8.05 71.98 0.58 -3.21 16 17 C 0.04 1.90 4.04 29.85 0.12 2.02 16 18 C -0.51 -26.93 7.65 25.60 0.20 -26.73 16 19 H 0.07 3.63 5.68 -2.91 -0.02 3.62 16 20 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 21 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 22 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 23 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 26 C -0.12 -2.06 9.68 22.23 0.22 -1.85 16 27 C -0.06 -1.07 9.62 22.54 0.22 -0.85 16 28 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.13 2.75 7.65 -2.91 -0.02 2.73 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 0.92 8.08 -2.39 -0.02 0.90 16 34 H 0.14 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.42 6.56 6.16 -92.71 -0.57 5.99 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.64 6.86 -2.38 -0.02 1.62 16 39 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 43 H 0.08 1.65 6.86 -2.39 -0.02 1.63 16 44 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 48 H 0.15 2.13 7.61 -2.91 -0.02 2.10 16 Total: -1.00 -78.06 398.29 5.70 -72.36 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.39 Total: 12.87 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.57 Total: -12.68 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.01 Total: -75.19 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -0.28 Total: -42.45 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -78.06 5.70 -72.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451768750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.627 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds