Wall clock time and date at job start Tue Mar 31 2020 19:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 C 1.53006 * 109.47051 * 240.00235 * 2 1 3 5 5 C 1.52994 * 109.47082 * 120.00075 * 2 1 3 6 6 H 1.08998 * 109.47430 * 299.84710 * 5 2 1 7 7 C 1.53001 * 109.47258 * 59.85340 * 5 2 1 8 8 O 1.42902 * 109.46994 * 59.25464 * 7 5 2 9 9 N 1.46508 * 109.46804 * 179.85007 * 5 2 1 10 10 C 1.34775 * 119.99694 * 155.00184 * 9 5 2 11 11 O 1.21728 * 120.00223 * 359.97438 * 10 9 5 12 12 C 1.46251 * 120.00035 * 180.02562 * 10 9 5 13 13 C 1.35023 * 120.00336 * 172.53786 * 12 10 9 14 14 C 1.46965 * 119.99902 * 345.86257 * 13 12 10 15 15 C 1.40025 * 120.09722 * 317.74734 * 14 13 12 16 16 C 1.37599 * 119.89753 * 179.70019 * 15 14 13 17 17 C 1.39177 * 120.09903 * 0.59538 * 16 15 14 18 18 O 1.35572 * 119.89979 * 179.69703 * 17 16 15 19 19 C 1.34778 * 117.00190 * 185.62650 * 18 17 16 20 20 H 1.08004 * 120.00320 * 5.18627 * 19 18 17 21 21 C 1.38715 * 120.00330 * 185.18777 * 19 18 17 22 22 N 1.31509 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46942 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47101 * 119.99847 * 23 21 19 26 26 H 1.48498 * 109.47217 * 239.99646 * 23 21 19 27 27 C 1.39180 * 120.20345 * 359.68101 * 17 16 15 28 28 C 1.37601 * 120.09983 * 0.02562 * 27 17 16 29 29 H 1.08994 * 109.46924 * 300.00278 * 1 2 3 30 30 H 1.09001 * 109.46796 * 59.99607 * 1 2 3 31 31 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47597 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47057 * 300.00096 * 3 2 1 34 34 H 1.09004 * 109.47307 * 59.99995 * 3 2 1 35 35 H 1.08999 * 109.46756 * 311.83833 * 4 2 1 36 36 H 1.08998 * 109.47342 * 71.84223 * 4 2 1 37 37 H 1.08997 * 109.46927 * 191.83939 * 4 2 1 38 38 H 1.08997 * 109.46757 * 299.25617 * 7 5 2 39 39 H 1.08996 * 109.47104 * 179.25361 * 7 5 2 40 40 H 0.96702 * 113.99430 * 180.02562 * 8 7 5 41 41 H 0.96994 * 120.00375 * 334.99849 * 9 5 2 42 42 H 1.07998 * 120.00004 * 352.53918 * 12 10 9 43 43 H 1.07996 * 120.00156 * 165.85775 * 13 12 10 44 44 H 1.07997 * 120.05315 * 359.97438 * 15 14 13 45 45 H 1.07992 * 119.95208 * 180.27621 * 16 15 14 46 46 H 0.97003 * 120.00141 * 179.97438 * 22 21 19 47 47 H 1.08001 * 119.94829 * 179.97438 * 27 17 16 48 48 H 1.07994 * 120.05042 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6789 -0.2059 2.1392 7 6 1.5270 -2.1627 1.2510 8 8 1.9862 -2.8332 0.0756 9 7 3.5051 -0.7243 1.2473 10 6 4.1801 -0.8265 2.4093 11 8 3.5726 -0.9158 3.4604 12 6 5.6426 -0.8291 2.4076 13 6 6.3193 -0.7793 3.5750 14 6 5.6200 -0.4129 4.8146 15 6 4.6942 0.6376 4.8143 16 6 4.0372 0.9732 5.9758 17 6 4.3009 0.2783 7.1525 18 8 3.6559 0.6163 8.2960 19 6 4.0387 -0.0144 9.4239 20 1 4.8816 -0.6894 9.4057 21 6 3.3501 0.2033 10.6083 22 7 2.3240 1.0256 10.6306 23 14 3.8812 -0.6703 12.1717 24 1 5.0538 -1.5340 11.8821 25 1 4.2487 0.3357 13.2004 26 1 2.7627 -1.5073 12.6753 27 6 5.2246 -0.7628 7.1589 28 6 5.8819 -1.1093 6.0007 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.5148 -1.6698 -1.3610 36 1 1.8592 -0.1002 -2.1267 37 1 3.1094 -0.9075 -1.1502 38 1 0.4371 -2.1604 1.2657 39 1 1.9012 -2.6804 2.1342 40 1 1.6976 -3.7538 0.0100 41 1 3.9892 -0.6529 0.4099 42 1 6.1815 -0.8707 1.4726 43 1 7.3743 -1.0088 3.5978 44 1 4.4927 1.1807 3.9028 45 1 3.3197 1.7803 5.9756 46 1 1.8422 1.1776 11.4587 47 1 5.4264 -1.2990 8.0745 48 1 6.5981 -1.9175 6.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492471217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:40 Heat of formation + Delta-G solvation = -65.144824 kcal Electronic energy + Delta-G solvation = -28963.202028 eV Core-core repulsion = 24984.775225 eV Total energy + Delta-G solvation = -3978.426804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.21960 -38.99850 -38.15253 -36.37164 -35.88776 -33.36422 -33.00502 -32.10315 -30.10636 -29.23127 -28.00704 -27.35080 -27.07267 -25.41770 -23.83763 -22.41255 -21.71988 -20.81603 -19.54676 -18.66956 -17.90533 -17.60100 -17.13192 -16.57533 -16.35552 -15.13481 -14.96346 -14.71515 -14.54799 -14.22617 -14.12223 -13.92280 -13.56580 -13.41219 -13.30556 -13.21085 -13.03354 -12.76411 -12.62859 -12.44560 -12.24932 -12.15413 -11.89975 -11.79492 -11.68018 -11.35532 -11.02337 -10.90705 -10.76546 -10.69778 -10.67606 -10.56312 -10.38759 -9.88306 -9.46707 -9.35693 -9.13355 -8.83919 -8.68162 -7.92584 -6.84719 -6.45446 -4.00919 1.28188 2.44120 2.72429 3.14117 3.14774 3.20174 3.39287 3.69066 3.97486 4.17409 4.42873 4.66140 4.71412 4.77997 5.09657 5.14557 5.16795 5.22498 5.26872 5.29740 5.35061 5.46029 5.51489 5.59778 5.61406 5.66753 5.73337 5.76210 5.80575 5.82645 5.87127 6.01598 6.04550 6.17032 6.27486 6.36521 6.37969 6.48444 6.63109 6.67934 6.81038 7.05294 7.13935 7.37719 7.43931 7.47424 7.51469 7.79067 7.93852 8.01402 8.63417 9.00460 9.72910 10.72600 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002631 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.149015 B =10639.306137 C =11299.393137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.136 4.136 5 C 0.160 3.840 6 H 0.099 0.901 7 C 0.060 3.940 8 O -0.559 6.559 9 N -0.721 5.721 10 C 0.540 3.460 11 O -0.518 6.518 12 C -0.267 4.267 13 C 0.025 3.975 14 C -0.184 4.184 15 C 0.007 3.993 16 C -0.202 4.202 17 C 0.170 3.830 18 O -0.173 6.173 19 C -0.389 4.389 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.248 4.248 28 C -0.043 4.043 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.368 0.632 41 H 0.396 0.604 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -4.558 -22.853 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.193 4.193 5 C 0.055 3.945 6 H 0.117 0.883 7 C -0.018 4.018 8 O -0.364 6.364 9 N -0.374 5.374 10 C 0.330 3.670 11 O -0.395 6.395 12 C -0.288 4.288 13 C 0.005 3.995 14 C -0.185 4.185 15 C -0.011 4.011 16 C -0.221 4.221 17 C 0.116 3.884 18 O -0.076 6.076 19 C -0.465 4.465 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.268 4.268 28 C -0.061 4.061 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.215 0.785 41 H 0.232 0.768 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.716 -3.772 -21.947 22.280 hybrid contribution 0.207 -1.095 0.435 1.196 sum 0.923 -4.866 -21.512 22.075 Atomic orbital electron populations 1.21911 0.93987 1.02016 1.02028 1.20752 0.95973 0.95451 0.95119 1.21886 1.01273 0.95033 1.01764 1.22005 1.01354 1.00853 0.95089 1.20985 0.81010 0.93625 0.98870 0.88327 1.22680 0.97566 0.93824 0.87758 1.86655 1.78739 1.28365 1.42650 1.45976 1.06118 1.76074 1.09243 1.18482 0.88547 0.76581 0.83393 1.90982 1.70030 1.48280 1.30176 1.22605 0.93086 1.14579 0.98500 1.22314 0.98008 0.87387 0.91762 1.18292 1.05065 1.02587 0.92541 1.20455 0.91332 0.94147 0.95191 1.19999 1.06153 1.04555 0.91397 1.19534 0.90255 0.91326 0.87315 1.83921 1.53488 1.57162 1.12987 1.21433 1.14808 1.26294 0.83976 0.88884 1.25326 0.95473 0.96984 0.98817 1.70034 1.18313 1.33105 1.27969 0.85637 0.78713 0.78867 0.80167 1.19037 1.20102 1.20130 1.20965 1.04012 1.02717 0.99080 1.20757 0.96979 0.96862 0.91505 0.92434 0.92360 0.92273 0.92491 0.92658 0.92511 0.89832 0.93965 0.93089 0.92905 0.92988 0.78539 0.76849 0.86298 0.86198 0.88097 0.86872 0.92016 0.85666 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.09 37.16 0.30 -0.85 16 2 C -0.07 -0.64 0.59 -154.51 -0.09 -0.73 16 3 C -0.14 -1.27 8.29 37.16 0.31 -0.96 16 4 C -0.14 -1.12 7.15 37.16 0.27 -0.85 16 5 C 0.16 1.79 1.77 -67.93 -0.12 1.67 16 6 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16 7 C 0.06 0.63 6.43 37.16 0.24 0.87 16 8 O -0.56 -4.83 9.66 -35.23 -0.34 -5.17 16 9 N -0.72 -8.36 4.17 -55.25 -0.23 -8.59 16 10 C 0.54 8.08 6.67 -13.04 -0.09 7.99 16 11 O -0.52 -10.03 12.13 5.16 0.06 -9.96 16 12 C -0.27 -3.49 9.86 -37.51 -0.37 -3.86 16 13 C 0.02 0.36 9.80 -37.19 -0.36 0.00 16 14 C -0.18 -3.44 4.51 -105.03 -0.47 -3.92 16 15 C 0.01 0.15 6.72 -39.15 -0.26 -0.12 16 16 C -0.20 -4.65 9.97 -39.47 -0.39 -5.05 16 17 C 0.17 4.36 6.66 -38.88 -0.26 4.10 16 18 O -0.17 -5.11 9.74 0.74 0.01 -5.11 16 19 C -0.39 -11.12 9.44 30.91 0.29 -10.82 16 20 H 0.09 2.47 5.27 -52.48 -0.28 2.19 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 23 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 C -0.25 -5.72 9.11 -39.46 -0.36 -6.08 16 28 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 6.44 -51.93 -0.33 0.12 16 32 H 0.06 0.51 7.46 -51.93 -0.39 0.13 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.71 5.79 -51.93 -0.30 0.41 16 36 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 37 H 0.05 0.43 6.18 -51.93 -0.32 0.11 16 38 H 0.05 0.48 6.47 -51.93 -0.34 0.14 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.37 1.91 9.12 45.56 0.42 2.32 16 41 H 0.40 3.83 6.52 -40.82 -0.27 3.56 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.10 1.85 7.06 -52.49 -0.37 1.48 16 45 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 47 H 0.13 2.86 5.69 -52.49 -0.30 2.56 16 48 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -33.76 383.48 -7.07 -40.84 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.23 Total: 10.11 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.86 Total: -18.85 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.53 Total: -33.39 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.27 Total: -20.24 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.76 -7.07 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492471217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.309 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds