Wall clock time and date at job start Tue Mar 31 2020 19:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 C 1.53006 * 109.47051 * 240.00235 * 2 1 3 5 5 C 1.52994 * 109.47082 * 120.00075 * 2 1 3 6 6 H 1.08998 * 109.47430 * 299.84710 * 5 2 1 7 7 C 1.53001 * 109.47258 * 59.85340 * 5 2 1 8 8 O 1.42902 * 109.46994 * 59.25464 * 7 5 2 9 9 N 1.46508 * 109.46804 * 179.85007 * 5 2 1 10 10 C 1.34775 * 119.99694 * 155.00184 * 9 5 2 11 11 O 1.21728 * 120.00223 * 359.97438 * 10 9 5 12 12 C 1.46251 * 120.00035 * 180.02562 * 10 9 5 13 13 C 1.35023 * 120.00336 * 172.53786 * 12 10 9 14 14 C 1.46965 * 119.99902 * 345.86257 * 13 12 10 15 15 C 1.40025 * 120.09722 * 317.74734 * 14 13 12 16 16 C 1.37599 * 119.89753 * 179.70019 * 15 14 13 17 17 C 1.39177 * 120.09903 * 0.59538 * 16 15 14 18 18 O 1.35572 * 119.89979 * 179.69703 * 17 16 15 19 19 C 1.34778 * 117.00190 * 185.62650 * 18 17 16 20 20 H 1.08004 * 120.00320 * 5.18627 * 19 18 17 21 21 C 1.38715 * 120.00330 * 185.18777 * 19 18 17 22 22 N 1.31509 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46942 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47101 * 119.99847 * 23 21 19 26 26 H 1.48498 * 109.47217 * 239.99646 * 23 21 19 27 27 C 1.39180 * 120.20345 * 359.68101 * 17 16 15 28 28 C 1.37601 * 120.09983 * 0.02562 * 27 17 16 29 29 H 1.08994 * 109.46924 * 300.00278 * 1 2 3 30 30 H 1.09001 * 109.46796 * 59.99607 * 1 2 3 31 31 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47597 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47057 * 300.00096 * 3 2 1 34 34 H 1.09004 * 109.47307 * 59.99995 * 3 2 1 35 35 H 1.08999 * 109.46756 * 311.83833 * 4 2 1 36 36 H 1.08998 * 109.47342 * 71.84223 * 4 2 1 37 37 H 1.08997 * 109.46927 * 191.83939 * 4 2 1 38 38 H 1.08997 * 109.46757 * 299.25617 * 7 5 2 39 39 H 1.08996 * 109.47104 * 179.25361 * 7 5 2 40 40 H 0.96702 * 113.99430 * 180.02562 * 8 7 5 41 41 H 0.96994 * 120.00375 * 334.99849 * 9 5 2 42 42 H 1.07998 * 120.00004 * 352.53918 * 12 10 9 43 43 H 1.07996 * 120.00156 * 165.85775 * 13 12 10 44 44 H 1.07997 * 120.05315 * 359.97438 * 15 14 13 45 45 H 1.07992 * 119.95208 * 180.27621 * 16 15 14 46 46 H 0.97003 * 120.00141 * 179.97438 * 22 21 19 47 47 H 1.08001 * 119.94829 * 179.97438 * 27 17 16 48 48 H 1.07994 * 120.05042 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6789 -0.2059 2.1392 7 6 1.5270 -2.1627 1.2510 8 8 1.9862 -2.8332 0.0756 9 7 3.5051 -0.7243 1.2473 10 6 4.1801 -0.8265 2.4093 11 8 3.5726 -0.9158 3.4604 12 6 5.6426 -0.8291 2.4076 13 6 6.3193 -0.7793 3.5750 14 6 5.6200 -0.4129 4.8146 15 6 4.6942 0.6376 4.8143 16 6 4.0372 0.9732 5.9758 17 6 4.3009 0.2783 7.1525 18 8 3.6559 0.6163 8.2960 19 6 4.0387 -0.0144 9.4239 20 1 4.8816 -0.6894 9.4057 21 6 3.3501 0.2033 10.6083 22 7 2.3240 1.0256 10.6306 23 14 3.8812 -0.6703 12.1717 24 1 5.0538 -1.5340 11.8821 25 1 4.2487 0.3357 13.2004 26 1 2.7627 -1.5073 12.6753 27 6 5.2246 -0.7628 7.1589 28 6 5.8819 -1.1093 6.0007 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.5148 -1.6698 -1.3610 36 1 1.8592 -0.1002 -2.1267 37 1 3.1094 -0.9075 -1.1502 38 1 0.4371 -2.1604 1.2657 39 1 1.9012 -2.6804 2.1342 40 1 1.6976 -3.7538 0.0100 41 1 3.9892 -0.6529 0.4099 42 1 6.1815 -0.8707 1.4726 43 1 7.3743 -1.0088 3.5978 44 1 4.4927 1.1807 3.9028 45 1 3.3197 1.7803 5.9756 46 1 1.8422 1.1776 11.4587 47 1 5.4264 -1.2990 8.0745 48 1 6.5981 -1.9175 6.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492471217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:39 Heat of formation + Delta-G solvation = -89.005386 kcal Electronic energy + Delta-G solvation = -28964.236700 eV Core-core repulsion = 24984.775225 eV Total energy + Delta-G solvation = -3979.461475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.33889 -40.64595 -39.38273 -38.02386 -36.64178 -34.61398 -34.43317 -33.88849 -31.83124 -30.28517 -29.33669 -28.03401 -27.95643 -27.37591 -24.98344 -23.73197 -23.33600 -22.22576 -20.71095 -19.90868 -19.51840 -18.81895 -18.41257 -17.95147 -17.29728 -16.40758 -16.35593 -16.26085 -15.90063 -15.55451 -15.45523 -15.40283 -14.85982 -14.67538 -14.56306 -14.33338 -14.26656 -14.05265 -13.79781 -13.58425 -13.54222 -13.36079 -13.04516 -12.94316 -12.69464 -12.62771 -12.49860 -12.32633 -12.23975 -12.09595 -11.65963 -11.52754 -11.46833 -11.26892 -10.95138 -10.72181 -10.56198 -10.36608 -9.95390 -9.57113 -8.55839 -8.49579 -6.16202 -0.01189 0.70615 1.12826 1.33282 1.44393 1.52623 2.16498 2.38168 2.50709 2.86667 3.22246 3.40382 3.49455 3.62647 3.88348 4.00848 4.05779 4.07313 4.15872 4.17588 4.35829 4.40655 4.49436 4.54480 4.59257 4.68982 4.76190 4.77020 4.84852 4.88589 4.95521 5.04545 5.09419 5.11599 5.14781 5.24794 5.26133 5.26749 5.34700 5.44279 5.48542 5.61940 5.67670 5.71994 5.76218 5.85261 6.01630 6.24232 6.76259 6.86970 6.94859 7.49595 7.77048 8.74330 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002631 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.149015 B =10639.306137 C =11299.393137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.130 4.130 5 C 0.156 3.844 6 H 0.066 0.934 7 C 0.071 3.929 8 O -0.558 6.558 9 N -0.702 5.702 10 C 0.527 3.473 11 O -0.570 6.570 12 C -0.233 4.233 13 C 0.004 3.996 14 C -0.156 4.156 15 C 0.009 3.991 16 C -0.219 4.219 17 C 0.127 3.873 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.022 2.978 24 H -0.250 1.250 25 H -0.266 1.266 26 H -0.268 1.268 27 C -0.256 4.256 28 C -0.049 4.049 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.386 0.614 41 H 0.410 0.590 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.118 0.882 45 H 0.101 0.899 46 H 0.273 0.727 47 H 0.120 0.880 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -6.496 -26.719 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.050 3.950 6 H 0.084 0.916 7 C -0.008 4.008 8 O -0.365 6.365 9 N -0.354 5.354 10 C 0.318 3.682 11 O -0.451 6.451 12 C -0.254 4.254 13 C -0.015 4.015 14 C -0.156 4.156 15 C -0.009 4.009 16 C -0.238 4.238 17 C 0.076 3.924 18 O -0.137 6.137 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.841 3.159 24 H -0.173 1.173 25 H -0.191 1.191 26 H -0.193 1.193 27 C -0.276 4.276 28 C -0.066 4.066 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.235 0.765 41 H 0.248 0.752 42 H 0.187 0.813 43 H 0.185 0.815 44 H 0.136 0.864 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.137 0.863 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.287 -5.730 -25.932 26.760 hybrid contribution -0.525 -0.554 1.043 1.293 sum 2.762 -6.285 -24.889 25.818 Atomic orbital electron populations 1.21920 0.93427 1.02422 1.02194 1.20715 0.96413 0.95185 0.94281 1.21892 1.01302 0.95019 1.01725 1.21947 1.01180 1.00861 0.94700 1.21013 0.80731 0.94358 0.98887 0.91562 1.22420 0.98152 0.92997 0.87268 1.86602 1.78809 1.29837 1.41258 1.45858 1.06440 1.74078 1.09045 1.19055 0.89751 0.76065 0.83373 1.90992 1.71228 1.50739 1.32147 1.23060 0.91781 1.10358 1.00168 1.22555 1.00108 0.89283 0.89563 1.18858 1.02415 0.99969 0.94398 1.20669 0.91131 0.94743 0.94376 1.20178 1.06915 1.04606 0.92147 1.20000 0.91803 0.93337 0.87216 1.83885 1.56016 1.59595 1.14226 1.21912 1.15661 1.26787 0.84626 0.88037 1.26675 0.95317 0.97708 1.02467 1.70184 1.20545 1.35933 1.29226 0.84492 0.78821 0.77780 0.74837 1.17344 1.19053 1.19321 1.21097 1.03920 1.02090 1.00445 1.21189 0.97169 0.97769 0.90520 0.93492 0.91009 0.91774 0.92381 0.91142 0.94159 0.89874 0.92827 0.93064 0.91644 0.96063 0.76475 0.75158 0.81345 0.81508 0.86365 0.88062 0.91758 0.86256 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.09 71.98 0.58 -1.50 16 2 C -0.07 -1.03 0.59 -52.18 -0.03 -1.06 16 3 C -0.14 -2.28 8.29 71.98 0.60 -1.68 16 4 C -0.13 -1.70 7.15 71.98 0.51 -1.18 16 5 C 0.16 3.33 1.77 44.99 0.08 3.41 16 6 H 0.07 1.88 7.58 -2.39 -0.02 1.87 16 7 C 0.07 1.40 6.43 71.98 0.46 1.86 16 8 O -0.56 -8.13 9.66 -148.98 -1.44 -9.57 16 9 N -0.70 -14.51 4.17 -446.91 -1.86 -16.38 16 10 C 0.53 14.44 6.67 86.33 0.58 15.02 16 11 O -0.57 -21.88 12.13 -4.44 -0.05 -21.93 16 12 C -0.23 -4.88 9.86 23.61 0.23 -4.64 16 13 C 0.00 0.10 9.80 23.82 0.23 0.33 16 14 C -0.16 -5.49 4.51 -20.13 -0.09 -5.58 16 15 C 0.01 0.37 6.72 22.55 0.15 0.52 16 16 C -0.22 -10.77 9.97 22.34 0.22 -10.55 16 17 C 0.13 6.98 6.66 22.72 0.15 7.13 16 18 O -0.23 -14.87 9.74 -20.25 -0.20 -15.07 16 19 C -0.41 -25.31 9.44 67.93 0.64 -24.67 16 20 H 0.10 5.71 5.27 -2.91 -0.02 5.70 16 21 C -0.02 -1.44 5.49 84.86 0.47 -0.97 16 22 N -0.92 -58.55 13.67 21.62 0.30 -58.26 16 23 Si 1.02 44.30 29.55 68.60 2.03 46.33 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 C -0.26 -12.20 9.11 22.35 0.20 -12.00 16 28 C -0.05 -1.84 9.78 22.55 0.22 -1.62 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.87 6.44 -2.39 -0.02 0.86 16 32 H 0.06 0.90 7.46 -2.39 -0.02 0.88 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.13 5.79 -2.39 -0.01 1.12 16 36 H 0.05 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.05 0.66 6.18 -2.39 -0.01 0.65 16 38 H 0.07 1.12 6.47 -2.39 -0.02 1.11 16 39 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.39 2.90 9.12 -74.06 -0.68 2.23 16 41 H 0.41 6.27 6.52 -92.71 -0.60 5.66 16 42 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.12 4.26 7.06 -2.91 -0.02 4.24 16 45 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 47 H 0.12 5.69 5.69 -2.91 -0.02 5.67 16 48 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -82.53 383.48 3.69 -78.83 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.29 Total: 33.23 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 5.21 Total: -37.18 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.57 Total: -74.63 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.69 Total: -46.57 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -82.53 3.69 -78.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492471217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.171 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds