Wall clock time and date at job start Tue Mar 31 2020 18:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47745 * 2 1 4 4 C 1.53006 * 109.47095 * 120.00167 * 2 1 3 5 5 C 1.53001 * 109.47084 * 301.83058 * 4 2 1 6 6 C 1.52994 * 109.47377 * 181.82775 * 4 2 1 7 7 O 1.42906 * 109.47362 * 300.31934 * 6 4 2 8 8 N 1.46500 * 109.46881 * 61.82620 * 4 2 1 9 9 C 1.34774 * 119.99933 * 180.02562 * 8 4 2 10 10 O 1.21725 * 120.00194 * 359.97438 * 9 8 4 11 11 C 1.46256 * 120.00158 * 180.02562 * 9 8 4 12 12 C 1.35025 * 120.00082 * 172.82219 * 11 9 8 13 13 C 1.46960 * 119.99740 * 348.72422 * 12 11 9 14 14 C 1.40024 * 120.10359 * 316.58826 * 13 12 11 15 15 C 1.37593 * 119.89296 * 179.79199 * 14 13 12 16 16 C 1.39173 * 120.10641 * 0.48486 * 15 14 13 17 17 O 1.35578 * 119.89816 * 179.76700 * 16 15 14 18 18 C 1.34778 * 116.99680 * 185.99140 * 17 16 15 19 19 H 1.07998 * 120.00388 * 5.40237 * 18 17 16 20 20 C 1.38717 * 119.99981 * 185.40231 * 18 17 16 21 21 N 1.31506 * 120.00189 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00043 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46857 * 90.00192 * 22 20 18 24 24 H 1.48499 * 109.47528 * 210.00105 * 22 20 18 25 25 H 1.48502 * 109.46905 * 330.00645 * 22 20 18 26 26 C 1.39173 * 120.20177 * 359.74718 * 16 15 14 27 27 C 1.37593 * 120.10361 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46824 * 300.00120 * 1 2 3 29 29 H 1.09005 * 109.46630 * 59.99468 * 1 2 3 30 30 H 1.08993 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47333 * 239.99923 * 2 1 3 32 32 H 1.08999 * 109.47521 * 184.73181 * 3 2 1 33 33 H 1.08996 * 109.47044 * 304.74448 * 3 2 1 34 34 H 1.09004 * 109.46603 * 64.73938 * 3 2 1 35 35 H 1.08996 * 109.46975 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.46778 * 299.99482 * 5 4 2 37 37 H 1.08999 * 109.47023 * 59.99260 * 5 4 2 38 38 H 1.08995 * 109.47492 * 60.31899 * 6 4 2 39 39 H 1.09001 * 109.47079 * 180.32052 * 6 4 2 40 40 H 0.96692 * 114.00276 * 179.97438 * 7 6 4 41 41 H 0.97000 * 120.00382 * 0.02562 * 8 4 2 42 42 H 1.07998 * 119.99653 * 352.54137 * 11 9 8 43 43 H 1.08002 * 120.00013 * 168.72955 * 12 11 9 44 44 H 1.08000 * 120.04749 * 359.97438 * 14 13 12 45 45 H 1.08004 * 119.94286 * 180.23124 * 15 14 13 46 46 H 0.97003 * 119.99866 * 179.97438 * 21 20 18 47 47 H 1.08002 * 119.94742 * 179.97438 * 26 16 15 48 48 H 1.08001 * 120.05420 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4927 -0.0272 2.4981 6 6 3.5692 -0.6816 1.2725 7 8 4.0803 -1.3234 0.1025 8 7 1.5879 -2.1146 1.2274 9 6 1.9195 -2.9466 2.2345 10 8 2.5950 -2.5404 3.1621 11 6 1.4686 -4.3378 2.2124 12 6 1.9181 -5.2080 3.1418 13 6 3.0378 -4.8346 4.0174 14 6 4.1589 -4.1857 3.4856 15 6 5.2030 -3.8342 4.3101 16 6 5.1504 -4.1316 5.6686 17 8 6.1835 -3.7876 6.4763 18 6 6.1286 -4.2119 7.7543 19 1 5.3332 -4.8702 8.0711 20 6 7.0937 -3.8029 8.6630 21 7 7.0404 -4.2173 9.9099 22 14 8.4699 -2.6649 8.1150 23 1 8.0495 -1.2531 8.3041 24 1 9.6854 -2.9321 8.9251 25 1 8.7686 -2.9045 6.6802 26 6 4.0402 -4.7808 6.2007 27 6 2.9894 -5.1320 5.3849 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1268 1.4435 -0.0848 33 1 1.6091 1.9802 -0.8444 34 1 1.7477 1.9311 0.9295 35 1 1.8556 -0.5413 3.3880 36 1 1.8291 1.0095 2.5144 37 1 0.4032 -0.0554 2.4814 38 1 3.9055 0.3549 1.2946 39 1 3.9327 -1.2004 2.1596 40 1 5.0457 -1.3352 0.0502 41 1 1.0499 -2.4385 0.4880 42 1 0.7727 -4.6678 1.4554 43 1 1.4548 -6.1784 3.2418 44 1 4.2027 -3.9589 2.4306 45 1 6.0665 -3.3304 3.9014 46 1 7.7155 -3.9316 10.5452 47 1 4.0039 -5.0100 7.2555 48 1 2.1281 -5.6353 5.7987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493085077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:42 Heat of formation + Delta-G solvation = -61.587054 kcal Electronic energy + Delta-G solvation = -29472.409776 eV Core-core repulsion = 25494.137248 eV Total energy + Delta-G solvation = -3978.272527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.46271 -39.09753 -38.02055 -36.45014 -35.80728 -33.18274 -33.06899 -32.27658 -30.26294 -30.16592 -28.18694 -27.61375 -26.11209 -25.35633 -23.87359 -22.53713 -21.88366 -20.84251 -19.26555 -18.87465 -17.81276 -17.40832 -17.33576 -16.84004 -16.15461 -15.39911 -15.09189 -14.80683 -14.70656 -14.23935 -13.93751 -13.89886 -13.69464 -13.54547 -13.33589 -13.18390 -12.89480 -12.85392 -12.63436 -12.50835 -12.21194 -12.18082 -12.08490 -11.99286 -11.63689 -11.46613 -11.25635 -10.93156 -10.86452 -10.78038 -10.62724 -10.55440 -10.14542 -10.03181 -9.47965 -9.24160 -9.14689 -8.88459 -8.74301 -7.98385 -6.95420 -6.41935 -4.05648 1.22737 2.34612 2.64716 3.22754 3.26622 3.31549 3.41062 3.64645 4.14025 4.24272 4.43708 4.62540 4.64274 4.79687 4.92137 5.04560 5.12460 5.14277 5.21102 5.22133 5.34496 5.39632 5.45454 5.52488 5.61320 5.64985 5.66683 5.69152 5.72212 5.79430 5.79972 5.92399 6.01681 6.07256 6.19509 6.28906 6.39017 6.41465 6.52726 6.66635 6.71460 6.94202 7.20316 7.34089 7.40514 7.56560 7.68289 7.75724 7.84896 8.07216 8.58780 8.93540 9.58461 10.65614 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.003123 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.840453 B = 8962.326112 C =10049.725748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.191 3.809 5 C -0.169 4.169 6 C 0.058 3.942 7 O -0.570 6.570 8 N -0.718 5.718 9 C 0.545 3.455 10 O -0.515 6.515 11 C -0.261 4.261 12 C 0.021 3.979 13 C -0.177 4.177 14 C 0.012 3.988 15 C -0.204 4.204 16 C 0.176 3.824 17 O -0.214 6.214 18 C -0.387 4.387 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.237 4.237 27 C -0.044 4.044 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.376 0.624 41 H 0.394 0.606 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.280 0.720 47 H 0.131 0.869 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 6.319 -21.018 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.205 4.205 4 C 0.105 3.895 5 C -0.227 4.227 6 C -0.021 4.021 7 O -0.374 6.374 8 N -0.370 5.370 9 C 0.335 3.665 10 O -0.392 6.392 11 C -0.282 4.282 12 C 0.002 3.998 13 C -0.178 4.178 14 C -0.006 4.006 15 C -0.223 4.223 16 C 0.123 3.877 17 O -0.118 6.118 18 C -0.462 4.462 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.256 4.256 27 C -0.063 4.063 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.222 0.778 41 H 0.228 0.772 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.149 0.851 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.245 6.686 -20.260 24.599 hybrid contribution 0.706 0.395 -0.258 0.848 sum -11.539 7.081 -20.518 24.582 Atomic orbital electron populations 1.21940 0.95078 1.01793 1.02011 1.21255 0.95691 0.96617 0.97713 1.21917 1.01371 0.95189 1.02043 1.20210 0.92031 0.81707 0.95548 1.22296 1.01259 1.00458 0.98695 1.22744 0.93877 0.96457 0.88978 1.86395 1.25790 1.81504 1.43750 1.45960 1.56039 1.10386 1.24648 1.18393 0.79677 0.86516 0.81935 1.90903 1.37081 1.77038 1.34177 1.22655 1.07904 0.93479 1.04163 1.22322 0.90754 0.96665 0.90076 1.18346 0.95905 1.09944 0.93588 1.20449 0.91177 0.91394 0.97614 1.19966 1.01197 1.10117 0.91050 1.19278 0.86594 0.91695 0.90094 1.83520 1.38867 1.67140 1.22295 1.20815 1.14615 1.29000 0.81798 0.87535 1.24488 0.98227 0.97342 0.93969 1.69626 1.35568 1.43848 1.02495 0.86186 0.80389 0.80615 0.79764 1.19879 1.20754 1.18311 1.21061 0.95296 1.08286 1.01007 1.20798 0.96677 0.96507 0.92279 0.92101 0.92613 0.92717 0.89990 0.92268 0.92487 0.92156 0.89696 0.91815 0.91892 0.93415 0.90687 0.77787 0.77162 0.86276 0.86075 0.87815 0.87052 0.91022 0.85112 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.64 37.16 0.32 -0.76 16 2 C -0.09 -0.79 2.15 -90.62 -0.19 -0.98 16 3 C -0.15 -1.13 8.45 37.16 0.31 -0.82 16 4 C 0.19 2.03 0.31 -131.82 -0.04 1.99 16 5 C -0.17 -1.91 7.70 37.16 0.29 -1.62 16 6 C 0.06 0.68 5.33 37.15 0.20 0.88 16 7 O -0.57 -6.29 12.88 -35.23 -0.45 -6.74 16 8 N -0.72 -7.86 4.68 -49.03 -0.23 -8.09 16 9 C 0.54 7.57 6.17 -13.04 -0.08 7.49 16 10 O -0.51 -8.98 8.39 5.17 0.04 -8.93 16 11 C -0.26 -3.21 9.90 -37.50 -0.37 -3.59 16 12 C 0.02 0.29 9.80 -37.19 -0.36 -0.07 16 13 C -0.18 -3.14 4.54 -105.02 -0.48 -3.62 16 14 C 0.01 0.23 6.59 -39.15 -0.26 -0.03 16 15 C -0.20 -4.33 9.97 -39.47 -0.39 -4.73 16 16 C 0.18 4.25 6.66 -38.89 -0.26 4.00 16 17 O -0.21 -5.81 8.57 0.73 0.01 -5.80 16 18 C -0.39 -11.09 9.89 30.91 0.31 -10.79 16 19 H 0.11 3.12 5.51 -52.49 -0.29 2.83 16 20 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 21 N -0.88 -25.57 13.96 55.48 0.77 -24.80 16 22 Si 0.90 21.96 28.62 -169.99 -4.86 17.10 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.24 -5.35 9.11 -39.47 -0.36 -5.71 16 27 C -0.04 -0.84 9.78 -39.14 -0.38 -1.23 16 28 H 0.06 0.45 6.39 -51.93 -0.33 0.12 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.37 6.97 -51.93 -0.36 0.01 16 31 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 32 H 0.06 0.48 6.67 -51.93 -0.35 0.13 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.45 6.24 -51.93 -0.32 0.13 16 35 H 0.08 1.24 6.16 -51.93 -0.32 0.92 16 36 H 0.06 0.63 6.37 -51.93 -0.33 0.30 16 37 H 0.06 0.65 6.39 -51.93 -0.33 0.32 16 38 H 0.05 0.50 6.52 -51.93 -0.34 0.16 16 39 H 0.08 1.12 6.15 -51.93 -0.32 0.80 16 40 H 0.38 2.95 9.12 45.56 0.42 3.37 16 41 H 0.39 3.47 7.42 -40.82 -0.30 3.17 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.10 1.80 7.01 -52.49 -0.37 1.43 16 45 H 0.11 2.23 8.06 -52.48 -0.42 1.81 16 46 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.13 3.08 5.70 -52.49 -0.30 2.78 16 48 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -32.30 376.11 -6.83 -39.13 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.92 Total: 10.35 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.85 Total: -17.88 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.55 Total: -32.89 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.40 Total: -21.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.30 -6.83 -39.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493085077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.453 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds