Wall clock time and date at job start Tue Mar 31 2020 18:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47745 * 2 1 4 4 C 1.53006 * 109.47095 * 120.00167 * 2 1 3 5 5 C 1.53001 * 109.47084 * 301.83058 * 4 2 1 6 6 C 1.52994 * 109.47377 * 181.82775 * 4 2 1 7 7 O 1.42906 * 109.47362 * 300.31934 * 6 4 2 8 8 N 1.46500 * 109.46881 * 61.82620 * 4 2 1 9 9 C 1.34774 * 119.99933 * 180.02562 * 8 4 2 10 10 O 1.21725 * 120.00194 * 359.97438 * 9 8 4 11 11 C 1.46256 * 120.00158 * 180.02562 * 9 8 4 12 12 C 1.35025 * 120.00082 * 172.82219 * 11 9 8 13 13 C 1.46960 * 119.99740 * 348.72422 * 12 11 9 14 14 C 1.40024 * 120.10359 * 316.58826 * 13 12 11 15 15 C 1.37593 * 119.89296 * 179.79199 * 14 13 12 16 16 C 1.39173 * 120.10641 * 0.48486 * 15 14 13 17 17 O 1.35578 * 119.89816 * 179.76700 * 16 15 14 18 18 C 1.34778 * 116.99680 * 185.99140 * 17 16 15 19 19 H 1.07998 * 120.00388 * 5.40237 * 18 17 16 20 20 C 1.38717 * 119.99981 * 185.40231 * 18 17 16 21 21 N 1.31506 * 120.00189 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00043 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46857 * 90.00192 * 22 20 18 24 24 H 1.48499 * 109.47528 * 210.00105 * 22 20 18 25 25 H 1.48502 * 109.46905 * 330.00645 * 22 20 18 26 26 C 1.39173 * 120.20177 * 359.74718 * 16 15 14 27 27 C 1.37593 * 120.10361 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46824 * 300.00120 * 1 2 3 29 29 H 1.09005 * 109.46630 * 59.99468 * 1 2 3 30 30 H 1.08993 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47333 * 239.99923 * 2 1 3 32 32 H 1.08999 * 109.47521 * 184.73181 * 3 2 1 33 33 H 1.08996 * 109.47044 * 304.74448 * 3 2 1 34 34 H 1.09004 * 109.46603 * 64.73938 * 3 2 1 35 35 H 1.08996 * 109.46975 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.46778 * 299.99482 * 5 4 2 37 37 H 1.08999 * 109.47023 * 59.99260 * 5 4 2 38 38 H 1.08995 * 109.47492 * 60.31899 * 6 4 2 39 39 H 1.09001 * 109.47079 * 180.32052 * 6 4 2 40 40 H 0.96692 * 114.00276 * 179.97438 * 7 6 4 41 41 H 0.97000 * 120.00382 * 0.02562 * 8 4 2 42 42 H 1.07998 * 119.99653 * 352.54137 * 11 9 8 43 43 H 1.08002 * 120.00013 * 168.72955 * 12 11 9 44 44 H 1.08000 * 120.04749 * 359.97438 * 14 13 12 45 45 H 1.08004 * 119.94286 * 180.23124 * 15 14 13 46 46 H 0.97003 * 119.99866 * 179.97438 * 21 20 18 47 47 H 1.08002 * 119.94742 * 179.97438 * 26 16 15 48 48 H 1.08001 * 120.05420 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4927 -0.0272 2.4981 6 6 3.5692 -0.6816 1.2725 7 8 4.0803 -1.3234 0.1025 8 7 1.5879 -2.1146 1.2274 9 6 1.9195 -2.9466 2.2345 10 8 2.5950 -2.5404 3.1621 11 6 1.4686 -4.3378 2.2124 12 6 1.9181 -5.2080 3.1418 13 6 3.0378 -4.8346 4.0174 14 6 4.1589 -4.1857 3.4856 15 6 5.2030 -3.8342 4.3101 16 6 5.1504 -4.1316 5.6686 17 8 6.1835 -3.7876 6.4763 18 6 6.1286 -4.2119 7.7543 19 1 5.3332 -4.8702 8.0711 20 6 7.0937 -3.8029 8.6630 21 7 7.0404 -4.2173 9.9099 22 14 8.4699 -2.6649 8.1150 23 1 8.0495 -1.2531 8.3041 24 1 9.6854 -2.9321 8.9251 25 1 8.7686 -2.9045 6.6802 26 6 4.0402 -4.7808 6.2007 27 6 2.9894 -5.1320 5.3849 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1268 1.4435 -0.0848 33 1 1.6091 1.9802 -0.8444 34 1 1.7477 1.9311 0.9295 35 1 1.8556 -0.5413 3.3880 36 1 1.8291 1.0095 2.5144 37 1 0.4032 -0.0554 2.4814 38 1 3.9055 0.3549 1.2946 39 1 3.9327 -1.2004 2.1596 40 1 5.0457 -1.3352 0.0502 41 1 1.0499 -2.4385 0.4880 42 1 0.7727 -4.6678 1.4554 43 1 1.4548 -6.1784 3.2418 44 1 4.2027 -3.9589 2.4306 45 1 6.0665 -3.3304 3.9014 46 1 7.7155 -3.9316 10.5452 47 1 4.0039 -5.0100 7.2555 48 1 2.1281 -5.6353 5.7987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493085077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:40 Heat of formation + Delta-G solvation = -84.524592 kcal Electronic energy + Delta-G solvation = -29473.404422 eV Core-core repulsion = 25494.137248 eV Total energy + Delta-G solvation = -3979.267173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.51069 -40.75725 -39.21680 -37.97642 -36.66647 -34.64666 -34.17849 -34.00594 -31.84385 -31.15562 -29.63277 -28.31157 -27.36278 -26.91699 -24.96291 -23.73829 -23.44813 -22.21541 -20.42215 -19.92542 -19.57403 -19.08731 -18.25939 -18.11213 -17.06397 -16.63382 -16.42542 -16.03181 -15.99946 -15.82088 -15.62015 -15.16206 -15.02588 -14.81223 -14.43145 -14.25538 -14.18031 -14.08587 -13.87618 -13.77716 -13.63028 -13.35879 -13.14750 -12.94282 -12.87717 -12.64772 -12.48077 -12.32573 -12.25832 -11.97091 -11.93168 -11.58704 -11.36374 -11.34183 -11.02313 -10.95106 -10.42283 -10.29669 -9.93019 -9.53569 -8.57902 -8.52421 -6.22998 -0.00292 0.69643 1.11623 1.27852 1.34455 1.49134 2.26059 2.39123 2.55158 2.79758 3.10364 3.18964 3.30758 3.68050 3.89386 4.00340 4.06845 4.14182 4.14404 4.17623 4.36519 4.44364 4.54034 4.56897 4.57453 4.66879 4.75947 4.76484 4.79361 4.86275 4.94736 5.01315 5.02753 5.04220 5.18386 5.20768 5.23005 5.28313 5.40041 5.44652 5.46752 5.58319 5.68510 5.75052 5.78494 5.85231 5.90509 6.27274 6.80582 6.81997 6.82956 7.54867 7.58309 8.59390 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.003123 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.840453 B = 8962.326112 C =10049.725748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.148 4.148 4 C 0.189 3.811 5 C -0.164 4.164 6 C 0.062 3.938 7 O -0.574 6.574 8 N -0.702 5.702 9 C 0.531 3.469 10 O -0.555 6.555 11 C -0.227 4.227 12 C -0.003 4.003 13 C -0.147 4.147 14 C 0.016 3.984 15 C -0.207 4.207 16 C 0.134 3.866 17 O -0.244 6.244 18 C -0.399 4.399 19 H 0.081 0.919 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.252 4.252 27 C -0.053 4.053 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.039 0.961 40 H 0.389 0.611 41 H 0.409 0.591 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.285 0.715 47 H 0.107 0.893 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 6.755 -25.283 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 C -0.206 4.206 4 C 0.103 3.897 5 C -0.222 4.222 6 C -0.017 4.017 7 O -0.381 6.381 8 N -0.354 5.354 9 C 0.321 3.679 10 O -0.436 6.436 11 C -0.248 4.248 12 C -0.023 4.023 13 C -0.147 4.147 14 C -0.002 4.002 15 C -0.226 4.226 16 C 0.084 3.916 17 O -0.152 6.152 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.271 4.271 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.237 0.763 41 H 0.246 0.754 42 H 0.185 0.815 43 H 0.180 0.820 44 H 0.141 0.859 45 H 0.134 0.866 46 H 0.095 0.905 47 H 0.125 0.875 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.771 7.115 -24.599 29.562 hybrid contribution 1.113 0.270 0.664 1.324 sum -13.658 7.385 -23.936 28.531 Atomic orbital electron populations 1.21936 0.93772 1.02398 1.02559 1.21185 0.96659 0.96559 0.95954 1.21929 1.01088 0.94876 1.02695 1.20285 0.91352 0.81683 0.96401 1.22229 1.01814 1.00734 0.97424 1.22625 0.94748 0.96533 0.87808 1.86352 1.27210 1.81442 1.43096 1.45864 1.55053 1.10295 1.24178 1.18896 0.79426 0.87648 0.81935 1.90925 1.38920 1.77855 1.35884 1.23108 1.06567 0.91922 1.03188 1.22516 0.90502 0.99254 0.89997 1.18875 0.96519 1.05811 0.93531 1.20675 0.90637 0.90787 0.98120 1.20187 1.02276 1.09999 0.90166 1.19735 0.87113 0.93731 0.90992 1.83460 1.40722 1.69349 1.21635 1.20733 1.14438 1.29320 0.83048 0.90169 1.25277 1.00537 0.98950 0.93974 1.69704 1.37096 1.45882 1.03523 0.85244 0.77953 0.78627 0.79034 1.19282 1.18712 1.18865 1.21088 0.96472 1.09031 1.00528 1.21129 0.96578 0.96657 0.92771 0.92385 0.91290 0.92090 0.90252 0.92871 0.91081 0.92148 0.93380 0.90752 0.90827 0.92442 0.94265 0.76281 0.75426 0.81545 0.81966 0.85932 0.86641 0.90489 0.87492 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.64 71.98 0.62 -0.95 16 2 C -0.08 -1.16 2.15 -10.79 -0.02 -1.18 16 3 C -0.15 -1.87 8.45 71.98 0.61 -1.26 16 4 C 0.19 3.58 0.31 3.60 0.00 3.58 16 5 C -0.16 -3.49 7.70 71.98 0.55 -2.93 16 6 C 0.06 1.37 5.33 71.98 0.38 1.76 16 7 O -0.57 -11.47 12.88 -148.98 -1.92 -13.39 16 8 N -0.70 -12.98 4.68 -427.24 -2.00 -14.98 16 9 C 0.53 13.08 6.17 86.33 0.53 13.61 16 10 O -0.56 -18.73 8.39 -4.43 -0.04 -18.77 16 11 C -0.23 -4.39 9.90 23.62 0.23 -4.15 16 12 C 0.00 -0.08 9.80 23.82 0.23 0.16 16 13 C -0.15 -4.90 4.54 -20.12 -0.09 -5.00 16 14 C 0.02 0.59 6.59 22.55 0.15 0.73 16 15 C -0.21 -9.04 9.97 22.34 0.22 -8.82 16 16 C 0.13 6.83 6.66 22.72 0.15 6.98 16 17 O -0.24 -14.17 8.57 -20.31 -0.17 -14.34 16 18 C -0.40 -24.63 9.89 67.93 0.67 -23.95 16 19 H 0.08 5.17 5.51 -2.91 -0.02 5.16 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.92 -56.51 13.96 21.62 0.30 -56.21 16 22 Si 0.97 47.19 28.62 68.60 1.96 49.16 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 26 C -0.25 -12.01 9.11 22.34 0.20 -11.81 16 27 C -0.05 -2.01 9.78 22.55 0.22 -1.79 16 28 H 0.06 0.66 6.39 -2.38 -0.02 0.65 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.56 6.97 -2.39 -0.02 0.55 16 31 H 0.08 1.18 7.73 -2.39 -0.02 1.16 16 32 H 0.05 0.74 6.67 -2.39 -0.02 0.72 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.76 6.24 -2.38 -0.01 0.75 16 35 H 0.05 1.41 6.16 -2.39 -0.01 1.39 16 36 H 0.07 1.38 6.37 -2.39 -0.02 1.37 16 37 H 0.07 1.37 6.39 -2.39 -0.02 1.35 16 38 H 0.06 1.15 6.52 -2.39 -0.02 1.13 16 39 H 0.04 1.18 6.15 -2.39 -0.01 1.16 16 40 H 0.39 5.45 9.12 -74.06 -0.68 4.78 16 41 H 0.41 5.26 7.42 -92.71 -0.69 4.57 16 42 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.12 4.00 7.01 -2.91 -0.02 3.98 16 45 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 46 H 0.29 15.99 8.31 -92.71 -0.77 15.22 16 47 H 0.11 5.53 5.70 -2.91 -0.02 5.52 16 48 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -76.60 376.11 2.92 -73.68 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.36 Total: 28.74 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 5.14 Total: -33.90 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.70 Total: -71.18 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -2.13 Total: -46.49 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.16 kcal Total: -76.60 2.92 -73.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493085077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.849 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds