Wall clock time and date at job start Tue Mar 31 2020 18:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 C 1.52997 * 109.47584 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46908 * 59.99573 * 4 3 2 6 6 O 1.42899 * 109.46878 * 300.00009 * 4 3 2 7 7 C 1.52996 * 109.47584 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47458 * 185.00229 * 7 4 3 9 9 C 1.34773 * 120.00102 * 179.97438 * 8 7 4 10 10 O 1.21725 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.46258 * 119.99912 * 179.97438 * 9 8 7 12 12 C 1.35021 * 119.99537 * 173.06924 * 11 9 8 13 13 C 1.46960 * 120.00740 * 348.87611 * 12 11 9 14 14 C 1.40024 * 120.09513 * 311.81786 * 13 12 11 15 15 C 1.37606 * 119.89488 * 179.69382 * 14 13 12 16 16 C 1.39174 * 120.09961 * 0.60118 * 15 14 13 17 17 O 1.35565 * 119.89871 * 179.69708 * 16 15 14 18 18 C 1.34781 * 117.00024 * 185.62049 * 17 16 15 19 19 H 1.07999 * 120.00310 * 354.89901 * 18 17 16 20 20 C 1.38718 * 120.00339 * 174.90667 * 18 17 16 21 21 N 1.31508 * 120.00516 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 359.97438 * 20 18 17 23 23 H 1.48491 * 109.47362 * 89.99886 * 22 20 18 24 24 H 1.48499 * 109.46948 * 210.00075 * 22 20 18 25 25 H 1.48503 * 109.47106 * 329.99804 * 22 20 18 26 26 C 1.39183 * 120.20407 * 359.67509 * 16 15 14 27 27 C 1.37602 * 120.10102 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46538 * 299.99983 * 1 2 3 30 30 H 1.08991 * 109.47384 * 59.99669 * 1 2 3 31 31 H 1.09009 * 109.47024 * 240.00226 * 2 1 3 32 32 H 1.09000 * 109.47219 * 120.00197 * 2 1 3 33 33 H 1.09003 * 109.47072 * 59.99776 * 3 2 1 34 34 H 1.09000 * 109.47055 * 300.00297 * 3 2 1 35 35 H 1.08999 * 109.47169 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47745 * 300.00575 * 5 4 3 37 37 H 1.09000 * 109.46983 * 60.00543 * 5 4 3 38 38 H 0.96694 * 114.00059 * 299.99918 * 6 4 3 39 39 H 1.09001 * 109.47384 * 64.99751 * 7 4 3 40 40 H 1.09006 * 109.47117 * 304.99939 * 7 4 3 41 41 H 0.97003 * 119.99560 * 359.97438 * 8 7 4 42 42 H 1.08001 * 119.99915 * 353.07208 * 11 9 8 43 43 H 1.08005 * 119.99157 * 169.14938 * 12 11 9 44 44 H 1.07999 * 120.05528 * 359.97438 * 14 13 12 45 45 H 1.08000 * 119.94917 * 180.27627 * 15 14 13 46 46 H 0.97000 * 120.00310 * 179.97438 * 21 20 18 47 47 H 1.07995 * 119.94823 * 180.02562 * 26 16 15 48 48 H 1.07995 * 120.05306 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7213 -1.2502 6 8 4.0468 0.7686 1.1658 7 6 4.0801 2.8849 0.0000 8 7 5.5401 2.8867 -0.1210 9 6 6.2130 4.0542 -0.1426 10 8 5.6078 5.1072 -0.0611 11 6 7.6706 4.0560 -0.2629 12 6 8.3332 5.2212 -0.4253 13 6 7.5904 6.4533 -0.7255 14 6 6.6208 6.4601 -1.7357 15 6 5.9234 7.6144 -2.0091 16 6 6.1893 8.7770 -1.2918 17 8 5.5041 9.9135 -1.5687 18 6 5.8873 11.0321 -0.9219 19 1 6.6510 10.9805 -0.1599 20 6 5.3009 12.2497 -1.2346 21 7 5.6744 13.3411 -0.6032 22 14 3.9803 12.3391 -2.5529 23 1 2.6466 12.1381 -1.9320 24 1 4.0253 13.6705 -3.2091 25 1 4.2195 11.2797 -3.5658 26 6 7.1563 8.7764 -0.2908 27 6 7.8544 7.6253 -0.0063 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1695 0.7217 -1.2509 36 1 3.7161 -0.3063 -1.2503 37 1 3.7158 1.2353 -2.1400 38 1 3.7618 1.1720 1.9971 39 1 3.7921 3.3717 0.9318 40 1 3.6451 3.4245 -0.8414 41 1 6.0224 2.0476 -0.1857 42 1 8.2170 3.1252 -0.2218 43 1 9.4094 5.2469 -0.3390 44 1 6.4174 5.5597 -2.2963 45 1 5.1721 7.6195 -2.7850 46 1 5.2646 14.1925 -0.8221 47 1 7.3590 9.6808 0.2635 48 1 8.6042 7.6256 0.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493184704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:15 Heat of formation + Delta-G solvation = -75.920571 kcal Electronic energy + Delta-G solvation = -28042.678432 eV Core-core repulsion = 24063.784357 eV Total energy + Delta-G solvation = -3978.894075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.06009 -39.17286 -38.54873 -36.61306 -34.60786 -34.32703 -33.08143 -32.27763 -31.31462 -30.20140 -28.47295 -27.45523 -26.55731 -25.26326 -23.11222 -21.94006 -21.78055 -20.83121 -20.65080 -19.32020 -17.82401 -17.46482 -16.97752 -16.85130 -16.08049 -15.47931 -15.22756 -15.15674 -14.74475 -14.36202 -14.33911 -13.91217 -13.77053 -13.72516 -13.56621 -13.34591 -12.89575 -12.79296 -12.75041 -12.56120 -12.32143 -12.21718 -12.13682 -12.12394 -12.08317 -11.60025 -11.39746 -11.06364 -10.95128 -10.84659 -10.74609 -10.68626 -10.27758 -10.13196 -9.53018 -9.41214 -9.23129 -8.98713 -8.75818 -8.04733 -6.99209 -6.40650 -4.04783 1.23077 2.33274 2.57549 3.23500 3.24429 3.27077 3.41984 3.59030 3.87981 4.24770 4.25297 4.41860 4.45489 4.61933 4.74089 4.81890 4.91947 5.02441 5.09711 5.13144 5.18152 5.22247 5.32268 5.37701 5.46047 5.50857 5.55807 5.58786 5.62917 5.68121 5.68333 5.76008 5.76564 5.94641 5.96781 6.18381 6.27741 6.36747 6.48258 6.50042 6.66973 6.92919 7.18289 7.26399 7.31468 7.39100 7.64537 7.68411 7.85746 8.07737 8.50838 8.94633 9.59364 10.66779 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.002459 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.778206 B =11384.292529 C =12967.919862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.144 4.144 4 C 0.121 3.879 5 C -0.141 4.141 6 O -0.556 6.556 7 C 0.097 3.903 8 N -0.730 5.730 9 C 0.537 3.463 10 O -0.514 6.514 11 C -0.257 4.257 12 C 0.021 3.979 13 C -0.171 4.171 14 C -0.003 4.003 15 C -0.198 4.198 16 C 0.174 3.826 17 O -0.214 6.214 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.233 4.233 27 C -0.047 4.047 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.378 0.622 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.398 0.602 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.279 0.721 47 H 0.132 0.868 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -27.528 0.542 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.183 4.183 4 C 0.080 3.920 5 C -0.198 4.198 6 O -0.362 6.362 7 C -0.027 4.027 8 N -0.384 5.384 9 C 0.326 3.674 10 O -0.390 6.390 11 C -0.278 4.278 12 C 0.002 3.998 13 C -0.172 4.172 14 C -0.021 4.021 15 C -0.217 4.217 16 C 0.121 3.879 17 O -0.119 6.119 18 C -0.463 4.463 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.252 4.252 27 C -0.065 4.065 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.225 0.775 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.234 0.766 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.090 0.910 47 H 0.150 0.850 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.051 -26.826 0.023 26.999 hybrid contribution -0.575 0.172 0.127 0.614 sum -3.626 -26.654 0.151 26.900 Atomic orbital electron populations 1.21798 0.95937 1.01594 1.01857 1.21484 0.95457 0.96102 1.02695 1.22231 0.94465 0.98180 1.03377 1.21464 0.92907 0.90495 0.87137 1.21796 1.01798 1.01111 0.95104 1.86526 1.77124 1.56876 1.15689 1.21930 0.81628 0.96322 1.02847 1.45905 1.06795 1.08961 1.76760 1.18513 0.88449 0.83397 0.76998 1.90998 1.69879 1.30190 1.47919 1.22678 0.93287 0.98745 1.13060 1.22358 0.98514 0.91643 0.87305 1.18349 1.03124 0.92966 1.02755 1.20419 0.91774 0.95218 0.94710 1.19994 1.05420 0.91898 1.04417 1.19262 0.89706 0.86763 0.92168 1.83501 1.52027 1.15244 1.61093 1.20820 1.23567 0.82693 1.19193 0.87503 1.24488 0.98082 0.93548 0.97925 1.69624 1.42039 0.98880 1.41031 0.86179 0.81235 0.77736 0.81767 1.19868 1.20800 1.18309 1.21081 1.01845 0.99486 1.02821 1.20773 0.97369 0.91360 0.97001 0.92775 0.92789 0.92751 0.91721 0.91372 0.91291 0.90629 0.91889 0.91292 0.90872 0.77470 0.91487 0.90771 0.76644 0.86051 0.85852 0.87963 0.86866 0.91034 0.85025 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.73 5.44 -26.73 -0.15 -0.88 16 3 C -0.14 -0.94 4.45 -26.73 -0.12 -1.06 16 4 C 0.12 0.87 0.75 -90.62 -0.07 0.80 16 5 C -0.14 -0.95 8.26 37.16 0.31 -0.64 16 6 O -0.56 -4.13 12.25 -35.23 -0.43 -4.56 16 7 C 0.10 0.96 4.81 -4.04 -0.02 0.94 16 8 N -0.73 -7.71 5.18 -61.75 -0.32 -8.03 16 9 C 0.54 7.63 6.94 -13.04 -0.09 7.54 16 10 O -0.51 -9.68 12.49 5.17 0.06 -9.61 16 11 C -0.26 -3.13 9.93 -37.50 -0.37 -3.50 16 12 C 0.02 0.29 9.77 -37.19 -0.36 -0.07 16 13 C -0.17 -3.08 4.34 -105.03 -0.46 -3.53 16 14 C 0.00 -0.05 6.77 -39.14 -0.27 -0.32 16 15 C -0.20 -4.29 9.97 -39.46 -0.39 -4.69 16 16 C 0.17 4.26 6.66 -38.88 -0.26 4.00 16 17 O -0.21 -5.88 8.57 0.76 0.01 -5.87 16 18 C -0.39 -11.19 9.94 30.91 0.31 -10.88 16 19 H 0.11 3.15 5.41 -52.49 -0.28 2.86 16 20 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 21 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 22 Si 0.91 22.09 28.62 -169.99 -4.86 17.22 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.23 -5.33 9.14 -39.46 -0.36 -5.69 16 27 C -0.05 -0.90 9.78 -39.15 -0.38 -1.29 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 6.43 -51.92 -0.33 0.06 16 32 H 0.07 0.45 7.68 -51.93 -0.40 0.05 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 36 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 1.93 9.04 45.56 0.41 2.34 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 3.37 6.97 -40.82 -0.28 3.08 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 44 H 0.10 1.75 7.46 -52.49 -0.39 1.36 16 45 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 46 H 0.28 7.53 8.31 -40.82 -0.34 7.20 16 47 H 0.13 3.12 5.62 -52.49 -0.29 2.82 16 48 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -33.30 392.08 -7.73 -41.03 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.46 Total: 6.90 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.41 Total: -18.08 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.45 Total: -32.94 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.36 Total: -20.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.30 -7.73 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493184704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.890 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds