Wall clock time and date at job start Tue Mar 31 2020 18:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 C 1.52997 * 109.47584 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46908 * 59.99573 * 4 3 2 6 6 O 1.42899 * 109.46878 * 300.00009 * 4 3 2 7 7 C 1.52996 * 109.47584 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47458 * 185.00229 * 7 4 3 9 9 C 1.34773 * 120.00102 * 179.97438 * 8 7 4 10 10 O 1.21725 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.46258 * 119.99912 * 179.97438 * 9 8 7 12 12 C 1.35021 * 119.99537 * 173.06924 * 11 9 8 13 13 C 1.46960 * 120.00740 * 348.87611 * 12 11 9 14 14 C 1.40024 * 120.09513 * 311.81786 * 13 12 11 15 15 C 1.37606 * 119.89488 * 179.69382 * 14 13 12 16 16 C 1.39174 * 120.09961 * 0.60118 * 15 14 13 17 17 O 1.35565 * 119.89871 * 179.69708 * 16 15 14 18 18 C 1.34781 * 117.00024 * 185.62049 * 17 16 15 19 19 H 1.07999 * 120.00310 * 354.89901 * 18 17 16 20 20 C 1.38718 * 120.00339 * 174.90667 * 18 17 16 21 21 N 1.31508 * 120.00516 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 359.97438 * 20 18 17 23 23 H 1.48491 * 109.47362 * 89.99886 * 22 20 18 24 24 H 1.48499 * 109.46948 * 210.00075 * 22 20 18 25 25 H 1.48503 * 109.47106 * 329.99804 * 22 20 18 26 26 C 1.39183 * 120.20407 * 359.67509 * 16 15 14 27 27 C 1.37602 * 120.10102 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46538 * 299.99983 * 1 2 3 30 30 H 1.08991 * 109.47384 * 59.99669 * 1 2 3 31 31 H 1.09009 * 109.47024 * 240.00226 * 2 1 3 32 32 H 1.09000 * 109.47219 * 120.00197 * 2 1 3 33 33 H 1.09003 * 109.47072 * 59.99776 * 3 2 1 34 34 H 1.09000 * 109.47055 * 300.00297 * 3 2 1 35 35 H 1.08999 * 109.47169 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47745 * 300.00575 * 5 4 3 37 37 H 1.09000 * 109.46983 * 60.00543 * 5 4 3 38 38 H 0.96694 * 114.00059 * 299.99918 * 6 4 3 39 39 H 1.09001 * 109.47384 * 64.99751 * 7 4 3 40 40 H 1.09006 * 109.47117 * 304.99939 * 7 4 3 41 41 H 0.97003 * 119.99560 * 359.97438 * 8 7 4 42 42 H 1.08001 * 119.99915 * 353.07208 * 11 9 8 43 43 H 1.08005 * 119.99157 * 169.14938 * 12 11 9 44 44 H 1.07999 * 120.05528 * 359.97438 * 14 13 12 45 45 H 1.08000 * 119.94917 * 180.27627 * 15 14 13 46 46 H 0.97000 * 120.00310 * 179.97438 * 21 20 18 47 47 H 1.07995 * 119.94823 * 180.02562 * 26 16 15 48 48 H 1.07995 * 120.05306 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7213 -1.2502 6 8 4.0468 0.7686 1.1658 7 6 4.0801 2.8849 0.0000 8 7 5.5401 2.8867 -0.1210 9 6 6.2130 4.0542 -0.1426 10 8 5.6078 5.1072 -0.0611 11 6 7.6706 4.0560 -0.2629 12 6 8.3332 5.2212 -0.4253 13 6 7.5904 6.4533 -0.7255 14 6 6.6208 6.4601 -1.7357 15 6 5.9234 7.6144 -2.0091 16 6 6.1893 8.7770 -1.2918 17 8 5.5041 9.9135 -1.5687 18 6 5.8873 11.0321 -0.9219 19 1 6.6510 10.9805 -0.1599 20 6 5.3009 12.2497 -1.2346 21 7 5.6744 13.3411 -0.6032 22 14 3.9803 12.3391 -2.5529 23 1 2.6466 12.1381 -1.9320 24 1 4.0253 13.6705 -3.2091 25 1 4.2195 11.2797 -3.5658 26 6 7.1563 8.7764 -0.2908 27 6 7.8544 7.6253 -0.0063 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1695 0.7217 -1.2509 36 1 3.7161 -0.3063 -1.2503 37 1 3.7158 1.2353 -2.1400 38 1 3.7618 1.1720 1.9971 39 1 3.7921 3.3717 0.9318 40 1 3.6451 3.4245 -0.8414 41 1 6.0224 2.0476 -0.1857 42 1 8.2170 3.1252 -0.2218 43 1 9.4094 5.2469 -0.3390 44 1 6.4174 5.5597 -2.2963 45 1 5.1721 7.6195 -2.7850 46 1 5.2646 14.1925 -0.8221 47 1 7.3590 9.6808 0.2635 48 1 8.6042 7.6256 0.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493184704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:14 Heat of formation + Delta-G solvation = -99.199355 kcal Electronic energy + Delta-G solvation = -28043.687876 eV Core-core repulsion = 24063.784357 eV Total energy + Delta-G solvation = -3979.903519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19164 -40.63969 -39.58471 -38.22398 -35.39284 -35.05635 -34.64564 -34.08607 -32.00306 -31.86276 -29.90514 -28.13834 -27.55283 -27.00053 -24.27655 -23.60282 -22.69426 -22.03871 -21.29048 -20.49768 -19.72302 -19.14614 -18.20210 -17.69553 -16.77605 -16.66057 -16.46005 -16.12591 -16.04471 -15.79485 -15.56201 -15.52864 -15.07156 -14.94403 -14.62765 -14.36919 -14.26912 -14.13290 -14.10638 -13.74710 -13.54851 -13.27565 -13.08567 -12.92498 -12.68666 -12.65949 -12.62664 -12.51309 -12.30081 -12.12056 -11.96108 -11.60038 -11.36841 -11.33018 -11.06982 -10.91422 -10.62076 -10.45684 -10.01990 -9.63978 -8.64935 -8.51978 -6.23121 0.01162 0.66727 1.03913 1.28376 1.34592 1.49368 2.26381 2.33527 2.47933 2.78204 3.09128 3.17118 3.31033 3.59480 3.83401 3.88274 3.97457 4.05911 4.12311 4.15197 4.20436 4.31844 4.52442 4.54777 4.57718 4.60142 4.70094 4.76917 4.83539 4.86227 4.93413 4.97067 4.98942 5.06796 5.17285 5.18398 5.21608 5.28176 5.40109 5.43337 5.44078 5.48045 5.54431 5.66760 5.76779 5.80791 5.89990 6.25746 6.69624 6.78923 6.81989 7.45043 7.57878 8.59525 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.002459 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.778206 B =11384.292529 C =12967.919862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.133 3.867 5 C -0.143 4.143 6 O -0.562 6.562 7 C 0.096 3.904 8 N -0.709 5.709 9 C 0.525 3.475 10 O -0.568 6.568 11 C -0.223 4.223 12 C -0.002 4.002 13 C -0.141 4.141 14 C -0.002 4.002 15 C -0.203 4.203 16 C 0.129 3.871 17 O -0.245 6.245 18 C -0.400 4.400 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.263 1.263 25 H -0.265 1.265 26 C -0.248 4.248 27 C -0.057 4.057 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.387 0.613 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.413 0.587 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.285 0.715 47 H 0.109 0.891 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -32.052 0.036 32.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.181 4.181 4 C 0.092 3.908 5 C -0.200 4.200 6 O -0.369 6.369 7 C -0.028 4.028 8 N -0.363 5.363 9 C 0.315 3.685 10 O -0.449 6.449 11 C -0.243 4.243 12 C -0.021 4.021 13 C -0.141 4.141 14 C -0.020 4.020 15 C -0.222 4.222 16 C 0.080 3.920 17 O -0.152 6.152 18 C -0.477 4.477 19 H 0.099 0.901 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.793 3.207 23 H -0.192 1.192 24 H -0.188 1.188 25 H -0.189 1.189 26 C -0.268 4.268 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.237 0.763 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.251 0.749 42 H 0.189 0.811 43 H 0.185 0.815 44 H 0.145 0.855 45 H 0.136 0.864 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.217 -31.447 -0.469 31.529 hybrid contribution -0.707 1.052 0.414 1.333 sum -2.924 -30.395 -0.055 30.536 Atomic orbital electron populations 1.21803 0.95774 1.01930 1.01747 1.21442 0.95572 0.95558 1.02698 1.22219 0.94002 0.98599 1.03320 1.21327 0.93139 0.88720 0.87581 1.21835 1.02025 1.01426 0.94720 1.86508 1.77260 1.56960 1.16215 1.21988 0.81170 0.98033 1.01651 1.45782 1.07170 1.08738 1.74604 1.19076 0.89609 0.83398 0.76431 1.91003 1.71112 1.32216 1.50547 1.23104 0.91985 1.00208 1.09016 1.22568 1.00381 0.89592 0.89565 1.18907 1.00929 0.94321 0.99966 1.20739 0.91383 0.94884 0.95040 1.20250 1.05934 0.91844 1.04220 1.19740 0.91312 0.86907 0.94033 1.83444 1.53850 1.15506 1.62394 1.20747 1.23577 0.84050 1.19294 0.90121 1.25291 1.00323 0.93013 1.00184 1.69702 1.43938 0.99492 1.43018 0.85225 0.78446 0.78174 0.78894 1.19197 1.18751 1.18906 1.21124 1.02598 1.00271 1.02763 1.21127 0.97664 0.90706 0.97989 0.92239 0.92946 0.92848 0.91404 0.91599 0.91333 0.90832 0.91519 0.90632 0.90670 0.76334 0.92722 0.92089 0.74888 0.81068 0.81531 0.85474 0.86379 0.90483 0.87347 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.19 5.44 30.59 0.17 -1.02 16 3 C -0.14 -1.63 4.45 30.59 0.14 -1.49 16 4 C 0.13 1.62 0.75 -10.79 -0.01 1.61 16 5 C -0.14 -1.51 8.26 71.98 0.59 -0.91 16 6 O -0.56 -6.78 12.25 -148.98 -1.83 -8.60 16 7 C 0.10 1.72 4.81 86.38 0.42 2.14 16 8 N -0.71 -12.56 5.18 -467.50 -2.42 -14.98 16 9 C 0.52 13.06 6.94 86.33 0.60 13.66 16 10 O -0.57 -20.47 12.49 -4.43 -0.06 -20.52 16 11 C -0.22 -4.15 9.93 23.62 0.23 -3.91 16 12 C 0.00 -0.04 9.77 23.82 0.23 0.19 16 13 C -0.14 -4.71 4.34 -20.13 -0.09 -4.80 16 14 C 0.00 -0.08 6.77 22.55 0.15 0.07 16 15 C -0.20 -8.98 9.97 22.35 0.22 -8.75 16 16 C 0.13 6.68 6.66 22.72 0.15 6.83 16 17 O -0.24 -14.28 8.57 -20.20 -0.17 -14.46 16 18 C -0.40 -24.82 9.94 67.93 0.68 -24.14 16 19 H 0.08 5.22 5.41 -2.91 -0.02 5.21 16 20 C 0.01 0.62 5.49 84.86 0.47 1.09 16 21 N -0.92 -56.54 13.96 21.62 0.30 -56.24 16 22 Si 0.97 47.32 28.62 68.60 1.96 49.28 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 26 C -0.25 -11.94 9.14 22.35 0.20 -11.74 16 27 C -0.06 -2.16 9.78 22.55 0.22 -1.94 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.66 6.43 -2.38 -0.02 0.65 16 32 H 0.07 0.72 7.68 -2.39 -0.02 0.70 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.65 6.57 -2.39 -0.02 0.63 16 36 H 0.07 0.73 6.43 -2.39 -0.02 0.71 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.39 3.04 9.04 -74.06 -0.67 2.37 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.41 5.06 6.97 -92.71 -0.65 4.42 16 42 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.13 3.98 7.46 -2.91 -0.02 3.96 16 45 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 46 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 47 H 0.11 5.63 5.62 -2.91 -0.02 5.61 16 48 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -78.24 392.08 2.55 -75.70 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.33 Total: 23.79 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 5.09 Total: -33.97 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.12 Total: -71.22 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -2.05 Total: -43.58 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.96 Total: 49.28 kcal Total: -78.24 2.55 -75.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493184704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.501 kcal (2) G-P(sol) polarization free energy of solvation -78.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds